Rorug03G0201700

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000072
Physical Location & Seq
Reverse (-)
17752235 .. 17755075
2841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0201700.1

Sequence Viewer

Length: 1404 bp
ATGTCAGACCAGAACCCCAACCCGGAATCAACGCCCGAGCCCATTGCCCGACCCGTCGGTGGAACCGAGTACAGCTGGTGCAAAGCCGTTCCCGTCGGCACTGGGATAACCGTCCTAGCTCTCCTCCTCACTAAACCCCCAAATATCCCACTTCTCCAAAATGCCCTCCACAACCTCCAAAATTCCCACCCTATCCTCCGCTCCAAGCACCAATTCGATCCCGCCACCAACACCCACTCCTTCCTCACTCCCCCGACTCCCCACCTCCAAATCCAGCCGTTCGATCTCCCATCAACGGCCAGCATTCTCCAGACCCACTCCGCGGTCTCCCCATTCCATCAAATCTTCGAACACGAGCTCAACCTCAACACGTGGCGCGACCCCGATCCTCCGTCGGCCGGCACCGACGTGTTGTTCGCCAGCACGTACACGCTCAGCGAGTCCCAGTGGGCCCTGGTGCTCCGGCTGCACACGTCAGCATGCGACCGTGCGTCGGCGGCGGCGCTGCTGAAGGAGCTGTTGGGGTCGGTTGGGGGAGGAGGGACAGGGAGGGAATTAAAAGGAAATGGGGAGGTTATCTCGGCACTTGAGGATCTGATCCCAAATGGGAAGGCGAACAAGCCGTTCTGGGCGCGTGGGGTGGACATGCTTGGGTACTCTTTGAATTCGTTAAGGCTGTCCAATATAGAGTTCAAAGACGTGAATTTGGCGAGGACTACCCAGATGGTGAAGTTGCGGCTTAACCCAGAACACACTGATAAGCTTCTTGCTGGTTGCAAGTCCAGAGGAATAAAATTATGCGGGGTGCTGGCAGCTGCTGGATTGATTGCCGCGCATGCCTCTAAGCACCTTCCCGATCATCAATGGGAAAAGTATGCTGTAGTAACGCTTCTTGACTGCCGTTCACTTCTTGATCCACCACTTTCTGCCAATGATTTTGGTTTTTATCATTCTGCCATCATGAATTCACATGACATAAACGGAGAAAACACACTGTGGGAGCTGGCAAAGAGATGCTACACAGCCTTTGCAGATGCCAAGAATTCTAACAAGCATTTCTCAGACATGTCAGACCTGAACTTCCTCATGTGCAAGGCTATCGAAAACCCTGGTTTGACTCCATCATCATCGATGAGAACTGCCTTTGTCTCGGTGTTTGAGGACCTAGTGATCGATGATTCCAGTGAAGTGCACCAAGAGCTTGGGTTGGAGGACTACGAGGGGTGCGCTTCAGTCCATGGTGTTGGCCCTTCCATAGCTATTTTTGACGCCATACGTGATGGAGGATTGAATTGTGCATGTGTTTATCCGTCGCCCTTGCATTCAAGGGAACAAATGCAAGACTTGATGGATCATATGAAGAGCGTTCTTGTAGATGGTTGTAATGTTGAGAGCGAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

467

Amino Acids

50.84

Weight (kDa)

5.56

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PapA_C PF16911 240 - 343 1.4e-09 Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 401
AccBSI CCGCTC 1 cut(s) 201
AccII CGCG 4 cut(s) 323, 378, 634, 833
AciI CCGC 9 cut(s) 199, 222, 321, 323, 497, 500, 736, 801, 831
AclWI GGATC 6 cut(s) 212, 380, 592, 600, 908, 1359
AcoI YGGCCR 2 cut(s) 297, 396
AcsI RAATTY 5 cut(s) 181, 664, 703, 964, 1042
AcuI CTGAAG 2 cut(s) 530, 1215
AcvI CACGTG 1 cut(s) 372
AcyI GRCGYC 1 cut(s) 1269
AdeI CACNNNGTG 1 cut(s) 996
AfaI GTAC 3 cut(s) 71, 428, 656
AfiI CCNNNNNNNGG 6 cut(s) 22, 59, 295, 322, 398, 493
AflIII ACRYGT 4 cut(s) 369, 408, 471, 1065
AgsI TTSAA 4 cut(s) 664, 694, 1291, 1326
AhdI GACNNNNNGTC 1 cut(s) 490
AjiI CACGTC 3 cut(s) 409, 474, 700
AjnI CCWGG 2 cut(s) 453, 1108
AjuI GAANNNNNNNTTGG 6 cut(s) 197, 229, 503, 535, 674, 706
AleI CACNNNNGTG 1 cut(s) 407
Alw21I GWGCWC 3 cut(s) 360, 462, 1194
Alw26I GTCTC 2 cut(s) 331, 1153
Alw44I GTGCAC 1 cut(s) 1190
AlwI GGATC 6 cut(s) 212, 380, 592, 600, 908, 1359
AlwNI CAGNNNCTG 1 cut(s) 818
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 4 cut(s) 297, 396, 450, 1246
ApaI GGGCCC 1 cut(s) 454
ApaLI GTGCAC 1 cut(s) 1190
ApeKI GCWGC 4 cut(s) 466, 505, 812, 815
ApoI RAATTY 5 cut(s) 181, 664, 703, 964, 1042
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AspLEI GCGC 5 cut(s) 378, 505, 634, 835, 1229
AspS9I GGNCC 4 cut(s) 450, 451, 1162, 1247
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 739
AsuII TTCGAA 1 cut(s) 348
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 1 cut(s) 1162
BaeGI GKGCMC 2 cut(s) 454, 1194
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 3 cut(s) 42, 360, 454
BarI GAAGNNNNNNTAC 2 cut(s) 873, 905
BauI CACGAG 1 cut(s) 353
BbrPI CACGTG 1 cut(s) 372
Bbv12I GWGCWC 3 cut(s) 360, 462, 1194
BbvI GCAGC 4 cut(s) 453, 492, 802, 824
BccI CCATC 8 cut(s) 298, 345, 718, 965, 1129, 1274, 1342, 1370
BceAI ACGGC 5 cut(s) 71, 262, 312, 607, 885
BcgI CGANNNNNNTGC 4 cut(s) 26, 60, 1081, 1115
BciT130I CCWGG 2 cut(s) 455, 1110
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 331, 1153
BfaI CTAG 3 cut(s) 116, 1166, 1402
BfmI CTRYAG 1 cut(s) 879
BfoI RGCGCY 1 cut(s) 506
BisI GCNGC 8 cut(s) 467, 498, 501, 506, 737, 813, 816, 831
BlpI GCTNAGC 1 cut(s) 434
BlsI GCNGC 8 cut(s) 468, 499, 502, 507, 738, 814, 817, 832
Bme1390I CCNGG 3 cut(s) 23, 455, 1110
Bme18I GGWCC 1 cut(s) 1162
BmeRI GACNNNNNGTC 1 cut(s) 490
BmeT110I CYCGRG 1 cut(s) 35
BmgBI CACGTC 3 cut(s) 409, 474, 700
BmgT120I GGNCC 4 cut(s) 450, 451, 1162, 1247
BmiI GGNNCC 3 cut(s) 64, 403, 452
BmrFI CCNGG 3 cut(s) 23, 455, 1110
BmrI ACTGGG 2 cut(s) 111, 439
BmsI GCATC 2 cut(s) 1004, 1024
BmuI ACTGGG 2 cut(s) 111, 439
BplI GAGNNNNNCTC 2 cut(s) 563, 595
BpmI CTGGAG 1 cut(s) 293
Bpu1102I GCTNAGC 1 cut(s) 434
Bpu14I TTCGAA 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 1 cut(s) 23
Bsa29I ATCGAT 2 cut(s) 1130, 1173
BsaAI YACGTR 3 cut(s) 372, 426, 1277
BsaHI GRCGYC 1 cut(s) 1269
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 4 cut(s) 321, 453, 1108, 1237
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 6 cut(s) 22, 59, 295, 322, 398, 493
Bse118I RCCGGY 1 cut(s) 398
Bse1I ACTGG 3 cut(s) 106, 445, 1182
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 2 cut(s) 455, 1110
BseCI ATCGAT 2 cut(s) 1130, 1173
BseDI CCNNGG 4 cut(s) 321, 453, 1108, 1237
BseLI CCNNNNNNNGG 6 cut(s) 22, 59, 295, 322, 398, 493
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 448, 1074
BseNI ACTGG 3 cut(s) 106, 445, 1182
BseRI GAGGAG 3 cut(s) 113, 116, 552
BseSI GKGCMC 2 cut(s) 454, 1194
BseX3I CGGCCG 1 cut(s) 396
BseXI GCAGC 4 cut(s) 453, 492, 802, 824
BsgI GTGCAG 1 cut(s) 452
Bsh1236I CGCG 4 cut(s) 323, 378, 634, 833
Bsh1285I CGRYCG 2 cut(s) 399, 487
BshFI GGCC 4 cut(s) 299, 398, 452, 1248
BshNI GGYRCC 1 cut(s) 401
BshVI ATCGAT 2 cut(s) 1130, 1173
BsiEI CGRYCG 2 cut(s) 399, 487
BsiHKAI GWGCWC 3 cut(s) 360, 462, 1194
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 3 cut(s) 23, 399, 463
BslFI GGGAC 2 cut(s) 427, 556
BslI CCNNNNNNNGG 6 cut(s) 22, 59, 295, 322, 398, 493
BsmAI GTCTC 2 cut(s) 331, 1153
BsmFI GGGAC 2 cut(s) 427, 556
BsmI GAATGC 2 cut(s) 303, 1321
BsnI GGCC 4 cut(s) 299, 398, 452, 1248
Bso31I GGTCTC 1 cut(s) 331
BsoBI CYCGRG 1 cut(s) 35
Bsp119I TTCGAA 1 cut(s) 348
Bsp120I GGGCCC 1 cut(s) 450
Bsp1286I GDGCHC 5 cut(s) 42, 360, 454, 462, 1194
Bsp143I GATC 9 cut(s) 217, 283, 385, 592, 597, 856, 913, 1170, 1351
Bsp1720I GCTNAGC 1 cut(s) 434
Bsp19I CCATGG 1 cut(s) 1237
BspACI CCGC 9 cut(s) 199, 222, 321, 323, 497, 500, 736, 801, 831
BspANI GGCC 4 cut(s) 299, 398, 452, 1248
BspCNI CTCAG 2 cut(s) 447, 1073
BspDI ATCGAT 2 cut(s) 1130, 1173
BspFNI CGCG 4 cut(s) 323, 378, 634, 833
BspHI TCATGA 1 cut(s) 960
BspLI GGNNCC 3 cut(s) 64, 403, 452
BspPI GGATC 6 cut(s) 212, 380, 592, 600, 908, 1359
BspQI GCTCTTC 1 cut(s) 1355
BspT104I TTCGAA 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 331
BsrBI CCGCTC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 398
BsrI ACTGG 3 cut(s) 106, 445, 1182
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 4 cut(s) 321, 453, 1108, 1237
BssMI GATC 9 cut(s) 217, 283, 385, 592, 597, 856, 913, 1170, 1351
BssNI GRCGYC 1 cut(s) 1269
BssSI CACGAG 1 cut(s) 353
BssT1I CCWWGG 1 cut(s) 1237
Bst2BI CACGAG 1 cut(s) 353
Bst2UI CCWGG 2 cut(s) 455, 1110
Bst4CI ACNGT 3 cut(s) 112, 488, 996
Bst6I CTCTTC 1 cut(s) 1355
BstACI GRCGYC 1 cut(s) 1269
BstBAI YACGTR 3 cut(s) 372, 426, 1277
BstBI TTCGAA 1 cut(s) 348
BstC8I GCNNGC 7 cut(s) 301, 400, 421, 481, 810, 837, 1005
BstDEI CTNAG 3 cut(s) 434, 843, 1060
BstDSI CCRYGG 2 cut(s) 321, 1237
BstFNI CGCG 4 cut(s) 323, 378, 634, 833
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 5 cut(s) 378, 505, 634, 835, 1229
BstKTI GATC 9 cut(s) 220, 286, 388, 595, 600, 859, 916, 1173, 1354
BstMAI GTCTC 2 cut(s) 331, 1153
BstMBI GATC 9 cut(s) 217, 283, 385, 592, 597, 856, 913, 1170, 1351
BstMCI CGRYCG 2 cut(s) 399, 487
BstMWI GCNNNNNNNGC 5 cut(s) 466, 497, 514, 836, 1198
BstNI CCWGG 2 cut(s) 455, 1110
BstNSI RCATGY 5 cut(s) 483, 649, 839, 1069, 1302
BstSCI CCNGG 3 cut(s) 21, 453, 1108
BstSFI CTRYAG 1 cut(s) 879
BstSLI GKGCMC 2 cut(s) 454, 1194
BstUI CGCG 4 cut(s) 323, 378, 634, 833
BstV1I GCAGC 4 cut(s) 453, 492, 802, 824
BstX2I RGATCY 1 cut(s) 592
BstXI CCANNNNNNTGG 2 cut(s) 1202, 1244
BstYI RGATCY 1 cut(s) 592
BstZI CGGCCG 1 cut(s) 396
Bsu15I ATCGAT 2 cut(s) 1130, 1173
BsuRI GGCC 4 cut(s) 299, 398, 452, 1248
BsuTUI ATCGAT 2 cut(s) 1130, 1173
BtgI CCRYGG 2 cut(s) 321, 1237
BtrI CACGTC 3 cut(s) 409, 474, 700
BtsIMutI CAGTG 5 cut(s) 99, 452, 753, 992, 1189
Cac8I GCNNGC 7 cut(s) 301, 400, 421, 481, 810, 837, 1005
CaiI CAGNNNCTG 1 cut(s) 818
CciI TCATGA 1 cut(s) 960
CfoI GCGC 5 cut(s) 378, 505, 634, 835, 1229
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 4 cut(s) 450, 451, 1162, 1247
Cfr42I CCGCGG 1 cut(s) 324
ClaI ATCGAT 2 cut(s) 1130, 1173
CseI GACGC 2 cut(s) 480, 1277
Csp6I GTAC 3 cut(s) 70, 427, 655
CviAII CATG 9 cut(s) 480, 646, 836, 961, 971, 1066, 1087, 1238, 1299
CviQI GTAC 3 cut(s) 70, 427, 655
DdeI CTNAG 3 cut(s) 434, 843, 1060
DpnI GATC 9 cut(s) 219, 285, 387, 594, 599, 858, 915, 1172, 1353
DpnII GATC 9 cut(s) 217, 283, 385, 592, 597, 856, 913, 1170, 1351
DraIII CACNNNGTG 1 cut(s) 996
DriI GACNNNNNGTC 1 cut(s) 490
EaeI YGGCCR 2 cut(s) 297, 396
EagI CGGCCG 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 1355
Eam1105I GACNNNNNGTC 1 cut(s) 490
EarI CTCTTC 1 cut(s) 1355
Ecl136II GAGCTC 1 cut(s) 358
EclXI CGGCCG 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 1237
Eco24I GRGCYC 3 cut(s) 42, 360, 454
Eco31I GGTCTC 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 1162
Eco52I CGGCCG 1 cut(s) 396
Eco53kI GAGCTC 1 cut(s) 358
Eco57I CTGAAG 2 cut(s) 530, 1215
Eco72I CACGTG 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 358
EcoO109I RGGNCCY 2 cut(s) 451, 1162
EcoRI GAATTC 3 cut(s) 664, 964, 1042
EcoRII CCWGG 2 cut(s) 453, 1108
EcoT14I CCWWGG 1 cut(s) 1237
EcoT38I GRGCYC 3 cut(s) 42, 360, 454
ErhI CCWWGG 1 cut(s) 1237
FaeI CATG 9 cut(s) 483, 649, 839, 964, 974, 1069, 1090, 1241, 1302
FaqI GGGAC 2 cut(s) 427, 556
FatI CATG 9 cut(s) 479, 645, 835, 960, 970, 1065, 1086, 1237, 1298
FauI CCCGC 2 cut(s) 229, 794
FauNDI CATATG 1 cut(s) 1356
Fnu4HI GCNGC 8 cut(s) 467, 498, 501, 506, 737, 813, 816, 831
FriOI GRGCYC 3 cut(s) 42, 360, 454
Fsp4HI GCNGC 8 cut(s) 467, 498, 501, 506, 737, 813, 816, 831
FspBI CTAG 3 cut(s) 116, 1166, 1402
GlaI GCGC 5 cut(s) 377, 504, 633, 834, 1228
GluI GCNGC 8 cut(s) 467, 498, 501, 506, 737, 813, 816, 831
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 506
HaeIII GGCC 4 cut(s) 299, 398, 452, 1248
HapII CCGG 3 cut(s) 23, 399, 463
HgaI GACGC 2 cut(s) 480, 1277
HhaI GCGC 5 cut(s) 378, 505, 634, 835, 1229
Hin1I GRCGYC 1 cut(s) 1269
Hin1II CATG 9 cut(s) 483, 649, 839, 964, 974, 1069, 1090, 1241, 1302
Hin6I GCGC 5 cut(s) 376, 503, 632, 833, 1227
HinP1I GCGC 5 cut(s) 376, 503, 632, 833, 1227
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 5 cut(s) 26, 256, 440, 1117, 1178
HpaII CCGG 3 cut(s) 23, 399, 463
HphI GGTGA 1 cut(s) 739
Hpy166II GTNNAC 4 cut(s) 429, 643, 905, 1192
Hpy188I TCNGA 4 cut(s) 7, 597, 1063, 1072
Hpy188III TCNNGA 6 cut(s) 310, 783, 854, 893, 911, 961
Hpy8I GTNNAC 4 cut(s) 429, 643, 905, 1192
Hpy99I CGWCG 6 cut(s) 59, 98, 397, 410, 496, 1315
HpyAV CCTTC 5 cut(s) 250, 505, 604, 860, 1260
HpyCH4III ACNGT 3 cut(s) 112, 488, 996
HpyCH4IV ACGT 6 cut(s) 371, 408, 425, 473, 699, 1276
HpyCH4V TGCA 9 cut(s) 81, 469, 777, 1031, 1092, 1192, 1298, 1321, 1339
HpyF10VI GCNNNNNNNGC 5 cut(s) 466, 497, 514, 836, 1198
HpyF3I CTNAG 3 cut(s) 434, 843, 1060
HpySE526I ACGT 6 cut(s) 371, 408, 425, 473, 699, 1276
Hsp92I GRCGYC 1 cut(s) 1269
Hsp92II CATG 9 cut(s) 483, 649, 839, 964, 974, 1069, 1090, 1241, 1302
HspAI GCGC 5 cut(s) 376, 503, 632, 833, 1227
KroI GCCGGC 1 cut(s) 398
KroNI GCCGGC 1 cut(s) 400
KspI CCGCGG 1 cut(s) 324
Kzo9I GATC 9 cut(s) 217, 283, 385, 592, 597, 856, 913, 1170, 1351
LguI GCTCTTC 1 cut(s) 1355
LmnI GCTCC 4 cut(s) 206, 465, 514, 1000
Lsp1109I GCAGC 4 cut(s) 453, 492, 802, 824
LweI GCATC 2 cut(s) 1004, 1024
MaeI CTAG 3 cut(s) 116, 1166, 1402
MaeII ACGT 6 cut(s) 371, 408, 425, 473, 699, 1276
MaeIII GTNAC 1 cut(s) 883
MalI GATC 9 cut(s) 219, 285, 387, 594, 599, 858, 915, 1172, 1353
MbiI CCGCTC 1 cut(s) 201
MboI GATC 9 cut(s) 217, 283, 385, 592, 597, 856, 913, 1170, 1351
MboII GAAGA 2 cut(s) 337, 1372
MflI RGATCY 1 cut(s) 592
MhlI GDGCHC 5 cut(s) 42, 360, 454, 462, 1194
MluCI AATT 9 cut(s) 181, 212, 554, 664, 703, 794, 964, 1042, 1291
MlyI GAGTC 3 cut(s) 250, 449, 1111
MmeI TCCRAC 1 cut(s) 1188
MroNI GCCGGC 1 cut(s) 398
MseI TTAA 3 cut(s) 557, 671, 741
MslI CAYNNNNRTG 1 cut(s) 407
MspA1I CMGCKG 3 cut(s) 75, 323, 815
MspI CCGG 3 cut(s) 23, 399, 463
MspR9I CCNGG 3 cut(s) 23, 455, 1110
Mva1269I GAATGC 2 cut(s) 303, 1321
MvaI CCWGG 2 cut(s) 455, 1110
MvnI CGCG 4 cut(s) 323, 378, 634, 833
MwoI GCNNNNNNNGC 5 cut(s) 466, 497, 514, 836, 1198
NaeI GCCGGC 1 cut(s) 400
NciI CCSGG 1 cut(s) 23
NcoI CCATGG 1 cut(s) 1237
NdeI CATATG 1 cut(s) 1356
NdeII GATC 9 cut(s) 217, 283, 385, 592, 597, 856, 913, 1170, 1351
NgoMIV GCCGGC 1 cut(s) 398
NlaIII CATG 9 cut(s) 483, 649, 839, 964, 974, 1069, 1090, 1241, 1302
NlaIV GGNNCC 3 cut(s) 64, 403, 452
NmeAIII GCCGAG 1 cut(s) 560
NspI RCATGY 5 cut(s) 483, 649, 839, 1069, 1302
NspV TTCGAA 1 cut(s) 348
OliI CACNNNNGTG 1 cut(s) 407
PaeI GCATGC 2 cut(s) 483, 839
PagI TCATGA 1 cut(s) 960
PciI ACATGT 1 cut(s) 1065
PciSI GCTCTTC 1 cut(s) 1355
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PctI GAATGC 2 cut(s) 303, 1321
PdiI GCCGGC 1 cut(s) 400
PfeI GAWTC 2 cut(s) 26, 1178
PkrI GCNGC 8 cut(s) 468, 499, 502, 507, 738, 814, 817, 832
PleI GAGTC 3 cut(s) 250, 448, 1111
PmaCI CACGTG 1 cut(s) 372
PmlI CACGTG 1 cut(s) 372
PpsI GAGTC 3 cut(s) 250, 448, 1111
Ppu21I YACGTR 3 cut(s) 372, 426, 1277
PpuMI RGGWCCY 1 cut(s) 1162
PscI ACATGT 1 cut(s) 1065
Psp124BI GAGCTC 1 cut(s) 360
Psp5II RGGWCCY 1 cut(s) 1162
Psp6I CCWGG 2 cut(s) 453, 1108
PspCI CACGTG 1 cut(s) 372
PspGI CCWGG 2 cut(s) 453, 1108
PspN4I GGNNCC 3 cut(s) 64, 403, 452
PspOMI GGGCCC 1 cut(s) 450
PspPI GGNCC 4 cut(s) 450, 451, 1162, 1247
PspPPI RGGWCCY 1 cut(s) 1162
PstNI CAGNNNCTG 1 cut(s) 818
PsuI RGATCY 1 cut(s) 592
PvuII CAGCTG 2 cut(s) 75, 815
RsaI GTAC 3 cut(s) 71, 428, 656
RsaNI GTAC 3 cut(s) 70, 427, 655
RseI CAYNNNNRTG 1 cut(s) 407
SacI GAGCTC 1 cut(s) 360
SacII CCGCGG 1 cut(s) 324
SapI GCTCTTC 1 cut(s) 1355
SaqAI TTAA 3 cut(s) 557, 671, 741
SatI GCNGC 8 cut(s) 467, 498, 501, 506, 737, 813, 816, 831
Sau3AI GATC 9 cut(s) 217, 283, 385, 592, 597, 856, 913, 1170, 1351
Sau96I GGNCC 4 cut(s) 450, 451, 1162, 1247
SchI GAGTC 3 cut(s) 250, 449, 1111
ScrFI CCNGG 3 cut(s) 23, 455, 1110
SduI GDGCHC 5 cut(s) 42, 360, 454, 462, 1194
SfaNI GCATC 2 cut(s) 1004, 1024
SfcI CTRYAG 1 cut(s) 879
Sfr303I CCGCGG 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 348
SgrBI CCGCGG 1 cut(s) 324
SinI GGWCC 1 cut(s) 1162
SmiMI CAYNNNNRTG 1 cut(s) 407
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
SphI GCATGC 2 cut(s) 483, 839
Sse9I AATT 9 cut(s) 181, 212, 554, 664, 703, 794, 964, 1042, 1291
SsiI CCGC 9 cut(s) 199, 222, 321, 323, 497, 500, 736, 801, 831
SspMI CTAG 3 cut(s) 116, 1166, 1402
SstI GAGCTC 1 cut(s) 360
StyD4I CCNGG 3 cut(s) 21, 453, 1108
StyI CCWWGG 1 cut(s) 1237
TaaI ACNGT 3 cut(s) 112, 488, 996
TaiI ACGT 6 cut(s) 374, 411, 428, 476, 702, 1279
TaqI TCGA 6 cut(s) 216, 282, 348, 1101, 1130, 1173
TasI AATT 9 cut(s) 181, 212, 554, 664, 703, 794, 964, 1042, 1291
TatI WGTACW 1 cut(s) 69
TauI GCSGC 4 cut(s) 500, 503, 739, 833
TfiI GAWTC 2 cut(s) 26, 1178
Tru1I TTAA 3 cut(s) 557, 671, 741
Tru9I TTAA 3 cut(s) 557, 671, 741
TscAI CASTG 5 cut(s) 106, 452, 760, 999, 1189
TseI GCWGC 4 cut(s) 466, 505, 812, 815
TspDTI ATGAA 2 cut(s) 977, 1373
TspGWI ACGGA 3 cut(s) 381, 996, 1299
TspRI CASTG 5 cut(s) 106, 452, 760, 999, 1189
VneI GTGCAC 1 cut(s) 1190
VpaK11BI GGWCC 1 cut(s) 1162
XapI RAATTY 5 cut(s) 181, 664, 703, 964, 1042
XceI RCATGY 5 cut(s) 483, 649, 839, 1069, 1302
XspI CTAG 3 cut(s) 116, 1166, 1402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.