Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 55 - 129 | 5e-13 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 638 |
| AccB1I | GGYRCC | 1 cut(s) | 638 |
| AciI | CCGC | 1 cut(s) | 232 |
| AcsI | RAATTY | 1 cut(s) | 598 |
| AcuI | CTGAAG | 1 cut(s) | 62 |
| AfaI | GTAC | 4 cut(s) | 96, 259, 535, 640 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 614, 768 |
| AgeI | ACCGGT | 1 cut(s) | 530 |
| AgsI | TTSAA | 2 cut(s) | 430, 528 |
| AjnI | CCWGG | 1 cut(s) | 157 |
| AluBI | AGCT | 3 cut(s) | 40, 61, 656 |
| AluI | AGCT | 3 cut(s) | 40, 61, 656 |
| Alw21I | GWGCWC | 1 cut(s) | 689 |
| Alw26I | GTCTC | 2 cut(s) | 107, 459 |
| Alw44I | GTGCAC | 1 cut(s) | 685 |
| AoxI | GGCC | 1 cut(s) | 558 |
| ApaLI | GTGCAC | 1 cut(s) | 685 |
| ApeKI | GCWGC | 4 cut(s) | 229, 441, 653, 656 |
| ApoI | RAATTY | 1 cut(s) | 598 |
| AsiGI | ACCGGT | 1 cut(s) | 530 |
| Asp718I | GGTACC | 1 cut(s) | 638 |
| AspLEI | GCGC | 2 cut(s) | 179, 495 |
| AsuHPI | GGTGA | 3 cut(s) | 68, 235, 492 |
| BaeGI | GKGCMC | 1 cut(s) | 689 |
| BanI | GGYRCC | 1 cut(s) | 638 |
| BanII | GRGCYC | 1 cut(s) | 169 |
| Bbv12I | GWGCWC | 1 cut(s) | 689 |
| BbvI | GCAGC | 4 cut(s) | 241, 453, 643, 665 |
| BccI | CCATC | 2 cut(s) | 386, 629 |
| BciT130I | CCWGG | 1 cut(s) | 159 |
| BcoDI | GTCTC | 2 cut(s) | 107, 459 |
| BfaI | CTAG | 2 cut(s) | 366, 645 |
| BfmI | CTRYAG | 1 cut(s) | 782 |
| BfoI | RGCGCY | 2 cut(s) | 180, 496 |
| BisI | GCNGC | 4 cut(s) | 230, 442, 654, 657 |
| BlsI | GCNGC | 4 cut(s) | 231, 443, 655, 658 |
| Bme1390I | CCNGG | 1 cut(s) | 159 |
| BmiI | GGNNCC | 3 cut(s) | 137, 156, 640 |
| BmrFI | CCNGG | 1 cut(s) | 159 |
| BpmI | CTGGAG | 1 cut(s) | 122 |
| Bpu10I | CCTNAGC | 1 cut(s) | 168 |
| BsaJI | CCNNGG | 1 cut(s) | 762 |
| BsaWI | WCCGGW | 1 cut(s) | 530 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 82, 112, 473, 503, 572, 602 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 614, 768 |
| Bse118I | RCCGGY | 1 cut(s) | 530 |
| Bse1I | ACTGG | 1 cut(s) | 544 |
| BseBI | CCWGG | 1 cut(s) | 159 |
| BseDI | CCNNGG | 1 cut(s) | 762 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 614, 768 |
| BseMII | CTCAG | 1 cut(s) | 182 |
| BseNI | ACTGG | 1 cut(s) | 544 |
| BseRI | GAGGAG | 2 cut(s) | 157, 494 |
| BseSI | GKGCMC | 1 cut(s) | 689 |
| BseXI | GCAGC | 4 cut(s) | 241, 453, 643, 665 |
| BseYI | CCCAGC | 1 cut(s) | 179 |
| BshFI | GGCC | 1 cut(s) | 560 |
| BshNI | GGYRCC | 1 cut(s) | 638 |
| BshTI | ACCGGT | 1 cut(s) | 530 |
| BsiHKAI | GWGCWC | 1 cut(s) | 689 |
| BsiSI | CCGG | 1 cut(s) | 531 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 614, 768 |
| BsmAI | GTCTC | 2 cut(s) | 107, 459 |
| BsmI | GAATGC | 1 cut(s) | 383 |
| BsnI | GGCC | 1 cut(s) | 560 |
| Bsp1286I | GDGCHC | 2 cut(s) | 169, 689 |
| BspACI | CCGC | 1 cut(s) | 232 |
| BspANI | GGCC | 1 cut(s) | 560 |
| BspCNI | CTCAG | 1 cut(s) | 181 |
| BspLI | GGNNCC | 3 cut(s) | 137, 156, 640 |
| BspT107I | GGYRCC | 1 cut(s) | 638 |
| BsrFI | RCCGGY | 1 cut(s) | 530 |
| BsrI | ACTGG | 1 cut(s) | 544 |
| BssAI | RCCGGY | 1 cut(s) | 530 |
| BssECI | CCNNGG | 1 cut(s) | 762 |
| BssT1I | CCWWGG | 1 cut(s) | 762 |
| Bst2UI | CCWGG | 1 cut(s) | 159 |
| Bst4CI | ACNGT | 2 cut(s) | 425, 667 |
| BstC8I | GCNNGC | 2 cut(s) | 318, 576 |
| BstDEI | CTNAG | 3 cut(s) | 168, 469, 713 |
| BstH2I | RGCGCY | 2 cut(s) | 180, 496 |
| BstHHI | GCGC | 2 cut(s) | 179, 495 |
| BstMAI | GTCTC | 2 cut(s) | 107, 459 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 20 |
| BstNI | CCWGG | 1 cut(s) | 159 |
| BstNSI | RCATGY | 1 cut(s) | 385 |
| BstSCI | CCNGG | 1 cut(s) | 157 |
| BstSFI | CTRYAG | 1 cut(s) | 782 |
| BstSLI | GKGCMC | 1 cut(s) | 689 |
| BstV1I | GCAGC | 4 cut(s) | 241, 453, 643, 665 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 706 |
| BsuRI | GGCC | 1 cut(s) | 560 |
| BtsIMutI | CAGTG | 1 cut(s) | 156 |
| Cac8I | GCNNGC | 2 cut(s) | 318, 576 |
| CfoI | GCGC | 2 cut(s) | 179, 495 |
| Cfr10I | RCCGGY | 1 cut(s) | 530 |
| Csp6I | GTAC | 4 cut(s) | 95, 258, 534, 639 |
| CspAI | ACCGGT | 1 cut(s) | 530 |
| CviAII | CATG | 4 cut(s) | 5, 382, 405, 604 |
| CviQI | GTAC | 4 cut(s) | 95, 258, 534, 639 |
| DdeI | CTNAG | 3 cut(s) | 168, 469, 713 |
| Eco130I | CCWWGG | 1 cut(s) | 762 |
| Eco147I | AGGCCT | 1 cut(s) | 560 |
| Eco24I | GRGCYC | 1 cut(s) | 169 |
| Eco57I | CTGAAG | 1 cut(s) | 62 |
| EcoRII | CCWGG | 1 cut(s) | 157 |
| EcoT14I | CCWWGG | 1 cut(s) | 762 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 383 |
| EcoT38I | GRGCYC | 1 cut(s) | 169 |
| ErhI | CCWWGG | 1 cut(s) | 762 |
| FaeI | CATG | 4 cut(s) | 8, 385, 408, 607 |
| FaiI | YATR | 9 cut(s) | 6, 359, 383, 406, 546, 580, 605, 705, 734 |
| FatI | CATG | 4 cut(s) | 4, 381, 404, 603 |
| Fnu4HI | GCNGC | 4 cut(s) | 230, 442, 654, 657 |
| FriOI | GRGCYC | 1 cut(s) | 169 |
| Fsp4HI | GCNGC | 4 cut(s) | 230, 442, 654, 657 |
| FspBI | CTAG | 2 cut(s) | 366, 645 |
| GlaI | GCGC | 2 cut(s) | 178, 494 |
| GluI | GCNGC | 4 cut(s) | 230, 442, 654, 657 |
| GsaI | CCCAGC | 1 cut(s) | 183 |
| GsuI | CTGGAG | 1 cut(s) | 122 |
| HaeII | RGCGCY | 2 cut(s) | 180, 496 |
| HaeIII | GGCC | 1 cut(s) | 560 |
| HapII | CCGG | 1 cut(s) | 531 |
| HhaI | GCGC | 2 cut(s) | 179, 495 |
| Hin1II | CATG | 4 cut(s) | 8, 385, 408, 607 |
| Hin6I | GCGC | 2 cut(s) | 177, 493 |
| HinP1I | GCGC | 2 cut(s) | 177, 493 |
| HincII | GTYRAC | 1 cut(s) | 670 |
| HindII | GTYRAC | 1 cut(s) | 670 |
| HinfI | GANTC | 2 cut(s) | 447, 755 |
| HpaII | CCGG | 1 cut(s) | 531 |
| HphI | GGTGA | 3 cut(s) | 68, 235, 492 |
| Hpy166II | GTNNAC | 3 cut(s) | 95, 670, 687 |
| Hpy188I | TCNGA | 2 cut(s) | 194, 631 |
| Hpy188III | TCNNGA | 1 cut(s) | 139 |
| Hpy8I | GTNNAC | 3 cut(s) | 95, 670, 687 |
| Hpy99I | CGWCG | 1 cut(s) | 102 |
| HpyAV | CCTTC | 8 cut(s) | 37, 68, 156, 301, 467, 571, 618, 703 |
| HpyCH4III | ACNGT | 2 cut(s) | 425, 667 |
| HpyCH4IV | ACGT | 1 cut(s) | 97 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 381, 404, 578, 653, 659, 687 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 20 |
| HpyF3I | CTNAG | 3 cut(s) | 168, 469, 713 |
| HpySE526I | ACGT | 1 cut(s) | 97 |
| Hsp92II | CATG | 4 cut(s) | 8, 385, 408, 607 |
| HspAI | GCGC | 2 cut(s) | 177, 493 |
| KpnI | GGTACC | 1 cut(s) | 642 |
| LmnI | GCTCC | 2 cut(s) | 141, 617 |
| Lsp1109I | GCAGC | 4 cut(s) | 241, 453, 643, 665 |
| MaeI | CTAG | 2 cut(s) | 366, 645 |
| MaeII | ACGT | 1 cut(s) | 97 |
| MaeIII | GTNAC | 2 cut(s) | 498, 723 |
| MboII | GAAGA | 3 cut(s) | 386, 644, 750 |
| MhlI | GDGCHC | 2 cut(s) | 169, 689 |
| MluCI | AATT | 5 cut(s) | 125, 282, 433, 598, 660 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 383 |
| MseI | TTAA | 3 cut(s) | 108, 243, 279 |
| MslI | CAYNNNNRTG | 1 cut(s) | 704 |
| MspA1I | CMGCKG | 2 cut(s) | 232, 656 |
| MspI | CCGG | 1 cut(s) | 531 |
| MspR9I | CCNGG | 1 cut(s) | 159 |
| Mva1269I | GAATGC | 1 cut(s) | 383 |
| MvaI | CCWGG | 1 cut(s) | 159 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 20 |
| NlaIII | CATG | 4 cut(s) | 8, 385, 408, 607 |
| NlaIV | GGNNCC | 3 cut(s) | 137, 156, 640 |
| NmuCI | GTSAC | 2 cut(s) | 498, 723 |
| NsiI | ATGCAT | 2 cut(s) | 6, 383 |
| NspI | RCATGY | 1 cut(s) | 385 |
| PceI | AGGCCT | 1 cut(s) | 560 |
| PctI | GAATGC | 1 cut(s) | 383 |
| PfeI | GAWTC | 2 cut(s) | 447, 755 |
| PflFI | GACNNNGTC | 1 cut(s) | 721 |
| PfoI | TCCNGGA | 1 cut(s) | 157 |
| PinAI | ACCGGT | 1 cut(s) | 530 |
| PkrI | GCNGC | 4 cut(s) | 231, 443, 655, 658 |
| Psp6I | CCWGG | 1 cut(s) | 157 |
| PspFI | CCCAGC | 1 cut(s) | 179 |
| PspGI | CCWGG | 1 cut(s) | 157 |
| PspN4I | GGNNCC | 3 cut(s) | 137, 156, 640 |
| PsyI | GACNNNGTC | 1 cut(s) | 721 |
| PvuII | CAGCTG | 1 cut(s) | 656 |
| RsaI | GTAC | 4 cut(s) | 96, 259, 535, 640 |
| RsaNI | GTAC | 4 cut(s) | 95, 258, 534, 639 |
| RseI | CAYNNNNRTG | 1 cut(s) | 704 |
| SaqAI | TTAA | 3 cut(s) | 108, 243, 279 |
| SatI | GCNGC | 4 cut(s) | 230, 442, 654, 657 |
| ScrFI | CCNGG | 1 cut(s) | 159 |
| SduI | GDGCHC | 2 cut(s) | 169, 689 |
| SfcI | CTRYAG | 1 cut(s) | 782 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 704 |
| Sse9I | AATT | 5 cut(s) | 125, 282, 433, 598, 660 |
| SseBI | AGGCCT | 1 cut(s) | 560 |
| SsiI | CCGC | 1 cut(s) | 232 |
| SspI | AATATT | 1 cut(s) | 247 |
| SspMI | CTAG | 2 cut(s) | 366, 645 |
| StuI | AGGCCT | 1 cut(s) | 560 |
| StyD4I | CCNGG | 1 cut(s) | 157 |
| StyI | CCWWGG | 1 cut(s) | 762 |
| TaaI | ACNGT | 2 cut(s) | 425, 667 |
| TaiI | ACGT | 1 cut(s) | 100 |
| TasI | AATT | 5 cut(s) | 125, 282, 433, 598, 660 |
| TfiI | GAWTC | 2 cut(s) | 447, 755 |
| Tru1I | TTAA | 3 cut(s) | 108, 243, 279 |
| Tru9I | TTAA | 3 cut(s) | 108, 243, 279 |
| TscAI | CASTG | 1 cut(s) | 156 |
| TseFI | GTSAC | 2 cut(s) | 498, 723 |
| TseI | GCWGC | 4 cut(s) | 229, 441, 653, 656 |
| Tsp45I | GTSAC | 2 cut(s) | 498, 723 |
| TspGWI | ACGGA | 1 cut(s) | 16 |
| TspRI | CASTG | 1 cut(s) | 156 |
| Tth111I | GACNNNGTC | 1 cut(s) | 721 |
| VneI | GTGCAC | 1 cut(s) | 685 |
| XapI | RAATTY | 1 cut(s) | 598 |
| XceI | RCATGY | 1 cut(s) | 385 |
| XspI | CTAG | 2 cut(s) | 366, 645 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 383 |