Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 598 |
| AciI | CCGC | 1 cut(s) | 598 |
| AfaI | GTAC | 2 cut(s) | 44, 592 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 338 |
| AgsI | TTSAA | 3 cut(s) | 184, 214, 349 |
| AjiI | CACGTC | 1 cut(s) | 133 |
| AleI | CACNNNNGTG | 1 cut(s) | 113 |
| AluBI | AGCT | 5 cut(s) | 58, 73, 381, 473, 633 |
| AluI | AGCT | 5 cut(s) | 58, 73, 381, 473, 633 |
| Alw26I | GTCTC | 1 cut(s) | 558 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 374, 556 |
| Ama87I | CYCGRG | 1 cut(s) | 642 |
| AoxI | GGCC | 4 cut(s) | 306, 677, 713, 798 |
| ApeKI | GCWGC | 5 cut(s) | 70, 325, 368, 440, 614 |
| AspS9I | GGNCC | 4 cut(s) | 306, 547, 677, 798 |
| AsuC2I | CCSGG | 1 cut(s) | 797 |
| AsuHPI | GGTGA | 2 cut(s) | 529, 785 |
| AvaI | CYCGRG | 1 cut(s) | 642 |
| AvaII | GGWCC | 1 cut(s) | 547 |
| BbvI | GCAGC | 5 cut(s) | 82, 337, 380, 427, 626 |
| BccI | CCATC | 3 cut(s) | 356, 508, 704 |
| BciVI | GTATCC | 1 cut(s) | 471 |
| BcnI | CCSGG | 1 cut(s) | 797 |
| BcoDI | GTCTC | 1 cut(s) | 558 |
| BfaI | CTAG | 1 cut(s) | 285 |
| BfuI | GTATCC | 1 cut(s) | 471 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 685 |
| BglII | AGATCT | 1 cut(s) | 573 |
| BisI | GCNGC | 5 cut(s) | 71, 326, 369, 441, 615 |
| BlsI | GCNGC | 5 cut(s) | 72, 327, 370, 442, 616 |
| Bme1390I | CCNGG | 1 cut(s) | 797 |
| Bme18I | GGWCC | 1 cut(s) | 547 |
| BmeT110I | CYCGRG | 1 cut(s) | 642 |
| BmgBI | CACGTC | 1 cut(s) | 133 |
| BmgT120I | GGNCC | 4 cut(s) | 306, 547, 677, 798 |
| BmiI | GGNNCC | 1 cut(s) | 307 |
| BmrFI | CCNGG | 1 cut(s) | 797 |
| BmsI | GCATC | 1 cut(s) | 765 |
| BpmI | CTGGAG | 2 cut(s) | 46, 554 |
| BpuMI | CCSGG | 1 cut(s) | 797 |
| BsaAI | YACGTR | 1 cut(s) | 46 |
| BsaI | GGTCTC | 1 cut(s) | 558 |
| BsaJI | CCNNGG | 1 cut(s) | 332 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 19, 49, 328, 358 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 338 |
| Bse1I | ACTGG | 2 cut(s) | 29, 464 |
| BseDI | CCNNGG | 1 cut(s) | 332 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 338 |
| BseMII | CTCAG | 1 cut(s) | 771 |
| BseNI | ACTGG | 2 cut(s) | 29, 464 |
| BseRI | GAGGAG | 1 cut(s) | 286 |
| BseXI | GCAGC | 5 cut(s) | 82, 337, 380, 427, 626 |
| BseYI | CCCAGC | 1 cut(s) | 443 |
| BsgI | GTGCAG | 1 cut(s) | 387 |
| Bsh1236I | CGCG | 1 cut(s) | 598 |
| BshFI | GGCC | 4 cut(s) | 308, 679, 715, 800 |
| BsiHKCI | CYCGRG | 1 cut(s) | 642 |
| BsiSI | CCGG | 2 cut(s) | 309, 796 |
| BsiWI | CGTACG | 1 cut(s) | 590 |
| BslFI | GGGAC | 2 cut(s) | 119, 614 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 338 |
| BsmAI | GTCTC | 1 cut(s) | 558 |
| BsmFI | GGGAC | 2 cut(s) | 119, 614 |
| BsmI | GAATGC | 1 cut(s) | 286 |
| BsnI | GGCC | 4 cut(s) | 308, 679, 715, 800 |
| Bso31I | GGTCTC | 1 cut(s) | 558 |
| BsoBI | CYCGRG | 1 cut(s) | 642 |
| Bsp143I | GATC | 2 cut(s) | 234, 573 |
| BspACI | CCGC | 1 cut(s) | 598 |
| BspANI | GGCC | 4 cut(s) | 308, 679, 715, 800 |
| BspCNI | CTCAG | 1 cut(s) | 772 |
| BspFNI | CGCG | 1 cut(s) | 598 |
| BspLI | GGNNCC | 1 cut(s) | 307 |
| BspTNI | GGTCTC | 1 cut(s) | 558 |
| BsrI | ACTGG | 2 cut(s) | 29, 464 |
| BssECI | CCNNGG | 1 cut(s) | 332 |
| BssMI | GATC | 2 cut(s) | 234, 573 |
| BssT1I | CCWWGG | 1 cut(s) | 332 |
| Bst4CI | ACNGT | 3 cut(s) | 94, 112, 359 |
| Bst6I | CTCTTC | 2 cut(s) | 537, 726 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 620 |
| BstBAI | YACGTR | 1 cut(s) | 46 |
| BstC8I | GCNNGC | 1 cut(s) | 631 |
| BstDEI | CTNAG | 1 cut(s) | 780 |
| BstFNI | CGCG | 1 cut(s) | 598 |
| BstKTI | GATC | 2 cut(s) | 237, 576 |
| BstMAI | GTCTC | 1 cut(s) | 558 |
| BstMBI | GATC | 2 cut(s) | 234, 573 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 595, 620, 685 |
| BstNSI | RCATGY | 2 cut(s) | 175, 260 |
| BstSCI | CCNGG | 1 cut(s) | 795 |
| BstUI | CGCG | 1 cut(s) | 598 |
| BstV1I | GCAGC | 5 cut(s) | 82, 337, 380, 427, 626 |
| BstX2I | RGATCY | 1 cut(s) | 573 |
| BstYI | RGATCY | 1 cut(s) | 573 |
| BsuI | GTATCC | 1 cut(s) | 471 |
| BsuRI | GGCC | 4 cut(s) | 308, 679, 715, 800 |
| BtrI | CACGTC | 1 cut(s) | 133 |
| BtsI | GCAGTG | 1 cut(s) | 202 |
| BtsIMutI | CAGTG | 2 cut(s) | 90, 202 |
| Cac8I | GCNNGC | 1 cut(s) | 631 |
| CaiI | CAGNNNCTG | 2 cut(s) | 374, 556 |
| Cfr13I | GGNCC | 4 cut(s) | 306, 547, 677, 798 |
| CseI | GACGC | 1 cut(s) | 604 |
| Csp6I | GTAC | 2 cut(s) | 43, 591 |
| CviQI | GTAC | 2 cut(s) | 43, 591 |
| DdeI | CTNAG | 1 cut(s) | 780 |
| DpnI | GATC | 2 cut(s) | 236, 575 |
| DpnII | GATC | 2 cut(s) | 234, 573 |
| Eam1104I | CTCTTC | 2 cut(s) | 537, 726 |
| EarI | CTCTTC | 2 cut(s) | 537, 726 |
| Eco130I | CCWWGG | 1 cut(s) | 332 |
| Eco147I | AGGCCT | 1 cut(s) | 715 |
| Eco31I | GGTCTC | 1 cut(s) | 558 |
| Eco47I | GGWCC | 1 cut(s) | 547 |
| Eco88I | CYCGRG | 1 cut(s) | 642 |
| EcoT14I | CCWWGG | 1 cut(s) | 332 |
| EcoT22I | ATGCAT | 1 cut(s) | 177 |
| ErhI | CCWWGG | 1 cut(s) | 332 |
| FaqI | GGGAC | 2 cut(s) | 119, 614 |
| FauI | CCCGC | 1 cut(s) | 591 |
| Fnu4HI | GCNGC | 5 cut(s) | 71, 326, 369, 441, 615 |
| Fsp4HI | GCNGC | 5 cut(s) | 71, 326, 369, 441, 615 |
| FspBI | CTAG | 1 cut(s) | 285 |
| GluI | GCNGC | 5 cut(s) | 71, 326, 369, 441, 615 |
| GsaI | CCCAGC | 1 cut(s) | 447 |
| GsuI | CTGGAG | 2 cut(s) | 46, 554 |
| HaeIII | GGCC | 4 cut(s) | 308, 679, 715, 800 |
| HapII | CCGG | 2 cut(s) | 309, 796 |
| HgaI | GACGC | 1 cut(s) | 604 |
| HindIII | AAGCTT | 1 cut(s) | 631 |
| HinfI | GANTC | 1 cut(s) | 553 |
| HpaII | CCGG | 2 cut(s) | 309, 796 |
| HphI | GGTGA | 2 cut(s) | 529, 785 |
| Hpy166II | GTNNAC | 2 cut(s) | 43, 130 |
| Hpy188I | TCNGA | 2 cut(s) | 376, 484 |
| Hpy188III | TCNNGA | 4 cut(s) | 550, 571, 703, 806 |
| Hpy8I | GTNNAC | 2 cut(s) | 43, 130 |
| Hpy99I | CGWCG | 1 cut(s) | 598 |
| HpyAV | CCTTC | 6 cut(s) | 194, 218, 261, 514, 644, 690 |
| HpyCH4III | ACNGT | 3 cut(s) | 94, 112, 359 |
| HpyCH4IV | ACGT | 2 cut(s) | 45, 132 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 595, 620, 685 |
| HpyF3I | CTNAG | 1 cut(s) | 780 |
| HpySE526I | ACGT | 2 cut(s) | 45, 132 |
| Kzo9I | GATC | 2 cut(s) | 234, 573 |
| LmnI | GCTCC | 1 cut(s) | 27 |
| LpnPI | CCDG | 7 cut(s) | 10, 322, 429, 477, 563, 584, 809 |
| Lsp1109I | GCAGC | 5 cut(s) | 82, 337, 380, 427, 626 |
| LweI | GCATC | 1 cut(s) | 765 |
| MaeI | CTAG | 1 cut(s) | 285 |
| MaeII | ACGT | 2 cut(s) | 45, 132 |
| MalI | GATC | 2 cut(s) | 236, 575 |
| MboI | GATC | 2 cut(s) | 234, 573 |
| MboII | GAAGA | 3 cut(s) | 554, 740, 743 |
| MfeI | CAATTG | 2 cut(s) | 31, 624 |
| MflI | RGATCY | 1 cut(s) | 573 |
| MluCI | AATT | 9 cut(s) | 19, 31, 147, 179, 419, 453, 624, 809, 817 |
| MlyI | GAGTC | 1 cut(s) | 547 |
| Mph1103I | ATGCAT | 1 cut(s) | 177 |
| MseI | TTAA | 7 cut(s) | 65, 146, 498, 560, 585, 719, 832 |
| MslI | CAYNNNNRTG | 4 cut(s) | 113, 170, 195, 261 |
| MspA1I | CMGCKG | 1 cut(s) | 73 |
| MspI | CCGG | 2 cut(s) | 309, 796 |
| MspR9I | CCNGG | 1 cut(s) | 797 |
| MunI | CAATTG | 2 cut(s) | 31, 624 |
| Mva1269I | GAATGC | 1 cut(s) | 286 |
| MvnI | CGCG | 1 cut(s) | 598 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 595, 620, 685 |
| NciI | CCSGG | 1 cut(s) | 797 |
| NdeII | GATC | 2 cut(s) | 234, 573 |
| NlaIV | GGNNCC | 1 cut(s) | 307 |
| NsiI | ATGCAT | 1 cut(s) | 177 |
| NspI | RCATGY | 2 cut(s) | 175, 260 |
| OliI | CACNNNNGTG | 1 cut(s) | 113 |
| PceI | AGGCCT | 1 cut(s) | 715 |
| PctI | GAATGC | 1 cut(s) | 286 |
| Pfl23II | CGTACG | 1 cut(s) | 590 |
| PkrI | GCNGC | 5 cut(s) | 72, 327, 370, 442, 616 |
| PleI | GAGTC | 1 cut(s) | 547 |
| PpsI | GAGTC | 1 cut(s) | 547 |
| Ppu21I | YACGTR | 1 cut(s) | 46 |
| PspFI | CCCAGC | 1 cut(s) | 443 |
| PspLI | CGTACG | 1 cut(s) | 590 |
| PspN4I | GGNNCC | 1 cut(s) | 307 |
| PspPI | GGNCC | 4 cut(s) | 306, 547, 677, 798 |
| PstNI | CAGNNNCTG | 2 cut(s) | 374, 556 |
| PsuI | RGATCY | 1 cut(s) | 573 |
| PvuII | CAGCTG | 1 cut(s) | 73 |
| RsaI | GTAC | 2 cut(s) | 44, 592 |
| RsaNI | GTAC | 2 cut(s) | 43, 591 |
| RseI | CAYNNNNRTG | 4 cut(s) | 113, 170, 195, 261 |
| SaqAI | TTAA | 7 cut(s) | 65, 146, 498, 560, 585, 719, 832 |
| SatI | GCNGC | 5 cut(s) | 71, 326, 369, 441, 615 |
| Sau3AI | GATC | 2 cut(s) | 234, 573 |
| Sau96I | GGNCC | 4 cut(s) | 306, 547, 677, 798 |
| SchI | GAGTC | 1 cut(s) | 547 |
| ScrFI | CCNGG | 1 cut(s) | 797 |
| SfaNI | GCATC | 1 cut(s) | 765 |
| SinI | GGWCC | 1 cut(s) | 547 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 113, 170, 195, 261 |
| Sse9I | AATT | 9 cut(s) | 19, 31, 147, 179, 419, 453, 624, 809, 817 |
| SseBI | AGGCCT | 1 cut(s) | 715 |
| SsiI | CCGC | 1 cut(s) | 598 |
| SspMI | CTAG | 1 cut(s) | 285 |
| StuI | AGGCCT | 1 cut(s) | 715 |
| StyD4I | CCNGG | 1 cut(s) | 795 |
| StyI | CCWWGG | 1 cut(s) | 332 |
| TaaI | ACNGT | 3 cut(s) | 94, 112, 359 |
| TaiI | ACGT | 2 cut(s) | 48, 135 |
| TaqI | TCGA | 2 cut(s) | 702, 723 |
| TasI | AATT | 9 cut(s) | 19, 31, 147, 179, 419, 453, 624, 809, 817 |
| Tru1I | TTAA | 7 cut(s) | 65, 146, 498, 560, 585, 719, 832 |
| Tru9I | TTAA | 7 cut(s) | 65, 146, 498, 560, 585, 719, 832 |
| TscAI | CASTG | 2 cut(s) | 97, 202 |
| TseI | GCWGC | 5 cut(s) | 70, 325, 368, 440, 614 |
| TspDTI | ATGAA | 4 cut(s) | 93, 182, 192, 237 |
| TspRI | CASTG | 2 cut(s) | 97, 202 |
| VpaK11BI | GGWCC | 1 cut(s) | 547 |
| XceI | RCATGY | 2 cut(s) | 175, 260 |
| XspI | CTAG | 1 cut(s) | 285 |
| Zsp2I | ATGCAT | 1 cut(s) | 177 |