Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 537 |
| AciI | CCGC | 5 cut(s) | 57, 305, 357, 393, 613 |
| AcoI | YGGCCR | 2 cut(s) | 302, 361 |
| AcsI | RAATTY | 1 cut(s) | 469 |
| AfaI | GTAC | 1 cut(s) | 594 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 53 |
| AflII | CTTAAG | 1 cut(s) | 638 |
| AflIII | ACRYGT | 1 cut(s) | 501 |
| AgsI | TTSAA | 1 cut(s) | 70 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 178, 210 |
| AluBI | AGCT | 4 cut(s) | 7, 13, 149, 336 |
| AluI | AGCT | 4 cut(s) | 7, 13, 149, 336 |
| Alw26I | GTCTC | 4 cut(s) | 23, 323, 558, 642 |
| AoxI | GGCC | 3 cut(s) | 58, 302, 361 |
| ApeKI | GCWGC | 4 cut(s) | 111, 114, 173, 190 |
| ApoI | RAATTY | 1 cut(s) | 469 |
| AseI | ATTAAT | 1 cut(s) | 387 |
| AsuHPI | GGTGA | 2 cut(s) | 133, 427 |
| BanII | GRGCYC | 1 cut(s) | 159 |
| BbvCI | CCTCAGC | 1 cut(s) | 169 |
| BbvI | GCAGC | 4 cut(s) | 123, 126, 177, 185 |
| BccI | CCATC | 1 cut(s) | 281 |
| BceAI | ACGGC | 5 cut(s) | 124, 161, 348, 364, 370 |
| BclI | TGATCA | 2 cut(s) | 270, 583 |
| BcoDI | GTCTC | 4 cut(s) | 23, 323, 558, 642 |
| BfaI | CTAG | 2 cut(s) | 333, 652 |
| BfrI | CTTAAG | 1 cut(s) | 638 |
| BisI | GCNGC | 6 cut(s) | 58, 112, 115, 174, 191, 305 |
| BlsI | GCNGC | 6 cut(s) | 59, 113, 116, 175, 192, 306 |
| BmsI | GCATC | 1 cut(s) | 486 |
| Bpu10I | CCTNAGC | 1 cut(s) | 169 |
| BpuEI | CTTGAG | 1 cut(s) | 475 |
| BsaI | GGTCTC | 1 cut(s) | 23 |
| BsaJI | CCNNGG | 3 cut(s) | 194, 346, 596 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 53 |
| Bse1I | ACTGG | 3 cut(s) | 47, 297, 572 |
| Bse3DI | GCAATG | 1 cut(s) | 169 |
| BseDI | CCNNGG | 3 cut(s) | 194, 346, 596 |
| BseGI | GGATG | 1 cut(s) | 342 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 53 |
| BseMI | GCAATG | 1 cut(s) | 169 |
| BseMII | CTCAG | 1 cut(s) | 183 |
| BseNI | ACTGG | 3 cut(s) | 47, 297, 572 |
| BseXI | GCAGC | 4 cut(s) | 123, 126, 177, 185 |
| BseYI | CCCAGC | 2 cut(s) | 13, 158 |
| BshFI | GGCC | 3 cut(s) | 60, 304, 363 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 53 |
| BsmAI | GTCTC | 4 cut(s) | 23, 323, 558, 642 |
| BsnI | GGCC | 3 cut(s) | 60, 304, 363 |
| Bso31I | GGTCTC | 1 cut(s) | 23 |
| Bsp1286I | GDGCHC | 1 cut(s) | 159 |
| Bsp143I | GATC | 2 cut(s) | 270, 583 |
| BspACI | CCGC | 5 cut(s) | 57, 305, 357, 393, 613 |
| BspANI | GGCC | 3 cut(s) | 60, 304, 363 |
| BspCNI | CTCAG | 1 cut(s) | 182 |
| BspHI | TCATGA | 1 cut(s) | 580 |
| BspQI | GCTCTTC | 1 cut(s) | 30 |
| BspTI | CTTAAG | 1 cut(s) | 638 |
| BspTNI | GGTCTC | 1 cut(s) | 23 |
| BsrDI | GCAATG | 1 cut(s) | 169 |
| BsrI | ACTGG | 3 cut(s) | 47, 297, 572 |
| BssECI | CCNNGG | 3 cut(s) | 194, 346, 596 |
| BssMI | GATC | 2 cut(s) | 270, 583 |
| BssT1I | CCWWGG | 2 cut(s) | 194, 596 |
| Bst4CI | ACNGT | 1 cut(s) | 379 |
| Bst6I | CTCTTC | 1 cut(s) | 30 |
| BstAFI | CTTAAG | 1 cut(s) | 638 |
| BstDEI | CTNAG | 2 cut(s) | 169, 485 |
| BstDSI | CCRYGG | 1 cut(s) | 346 |
| BstF5I | GGATG | 1 cut(s) | 342 |
| BstKTI | GATC | 2 cut(s) | 273, 586 |
| BstMAI | GTCTC | 4 cut(s) | 23, 323, 558, 642 |
| BstMBI | GATC | 2 cut(s) | 270, 583 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 173, 187, 199, 619 |
| BstNSI | RCATGY | 1 cut(s) | 505 |
| BstV1I | GCAGC | 4 cut(s) | 123, 126, 177, 185 |
| BsuRI | GGCC | 3 cut(s) | 60, 304, 363 |
| BtgI | CCRYGG | 1 cut(s) | 346 |
| BtsCI | GGATG | 1 cut(s) | 342 |
| CciI | TCATGA | 1 cut(s) | 580 |
| Csp6I | GTAC | 1 cut(s) | 593 |
| CviAII | CATG | 3 cut(s) | 318, 502, 581 |
| CviQI | GTAC | 1 cut(s) | 593 |
| DdeI | CTNAG | 2 cut(s) | 169, 485 |
| DpnI | GATC | 2 cut(s) | 272, 585 |
| DpnII | GATC | 2 cut(s) | 270, 583 |
| EaeI | YGGCCR | 2 cut(s) | 302, 361 |
| Eam1104I | CTCTTC | 1 cut(s) | 30 |
| EarI | CTCTTC | 1 cut(s) | 30 |
| EciI | GGCGGA | 1 cut(s) | 408 |
| Eco130I | CCWWGG | 2 cut(s) | 194, 596 |
| Eco24I | GRGCYC | 1 cut(s) | 159 |
| Eco31I | GGTCTC | 1 cut(s) | 23 |
| EcoT14I | CCWWGG | 2 cut(s) | 194, 596 |
| EcoT38I | GRGCYC | 1 cut(s) | 159 |
| ErhI | CCWWGG | 2 cut(s) | 194, 596 |
| FaeI | CATG | 3 cut(s) | 321, 505, 584 |
| FaiI | YATR | 6 cut(s) | 249, 269, 319, 503, 537, 582 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 437, 469 |
| FatI | CATG | 3 cut(s) | 317, 501, 580 |
| FbaI | TGATCA | 2 cut(s) | 270, 583 |
| Fnu4HI | GCNGC | 6 cut(s) | 58, 112, 115, 174, 191, 305 |
| FokI | GGATG | 1 cut(s) | 329 |
| FriOI | GRGCYC | 1 cut(s) | 159 |
| Fsp4HI | GCNGC | 6 cut(s) | 58, 112, 115, 174, 191, 305 |
| FspBI | CTAG | 2 cut(s) | 333, 652 |
| GluI | GCNGC | 6 cut(s) | 58, 112, 115, 174, 191, 305 |
| GsaI | CCCAGC | 2 cut(s) | 17, 162 |
| HaeIII | GGCC | 3 cut(s) | 60, 304, 363 |
| Hin1II | CATG | 3 cut(s) | 321, 505, 584 |
| HindIII | AAGCTT | 1 cut(s) | 147 |
| HinfI | GANTC | 2 cut(s) | 524, 627 |
| HphI | GGTGA | 2 cut(s) | 133, 427 |
| Hpy188I | TCNGA | 2 cut(s) | 375, 529 |
| Hpy188III | TCNNGA | 3 cut(s) | 551, 581, 587 |
| Hpy99I | CGWCG | 5 cut(s) | 227, 230, 233, 356, 369 |
| HpyAV | CCTTC | 3 cut(s) | 319, 406, 554 |
| HpyCH4III | ACNGT | 1 cut(s) | 379 |
| HpyCH4V | TGCA | 2 cut(s) | 499, 622 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 173, 187, 199, 619 |
| HpyF3I | CTNAG | 2 cut(s) | 169, 485 |
| Hsp92II | CATG | 3 cut(s) | 321, 505, 584 |
| Ksp22I | TGATCA | 2 cut(s) | 270, 583 |
| Kzo9I | GATC | 2 cut(s) | 270, 583 |
| LguI | GCTCTTC | 1 cut(s) | 30 |
| LmnI | GCTCC | 1 cut(s) | 4 |
| LpnPI | CCDG | 5 cut(s) | 60, 172, 278, 541, 553 |
| Lsp1109I | GCAGC | 4 cut(s) | 123, 126, 177, 185 |
| LweI | GCATC | 1 cut(s) | 486 |
| MaeI | CTAG | 2 cut(s) | 333, 652 |
| MaeIII | GTNAC | 2 cut(s) | 104, 257 |
| MalI | GATC | 2 cut(s) | 272, 585 |
| MboI | GATC | 2 cut(s) | 270, 583 |
| MboII | GAAGA | 4 cut(s) | 17, 245, 296, 334 |
| MhlI | GDGCHC | 1 cut(s) | 159 |
| MluCI | AATT | 4 cut(s) | 40, 469, 532, 632 |
| MlyI | GAGTC | 1 cut(s) | 621 |
| MmeI | TCCRAC | 2 cut(s) | 53, 412 |
| MnlI | CCTC | 6 cut(s) | 71, 178, 192, 274, 418, 636 |
| MseI | TTAA | 4 cut(s) | 75, 312, 387, 639 |
| MslI | CAYNNNNRTG | 1 cut(s) | 266 |
| MspA1I | CMGCKG | 1 cut(s) | 13 |
| MspCI | CTTAAG | 1 cut(s) | 638 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 173, 187, 199, 619 |
| NdeII | GATC | 2 cut(s) | 270, 583 |
| NlaIII | CATG | 3 cut(s) | 321, 505, 584 |
| NmuCI | GTSAC | 1 cut(s) | 104 |
| NspI | RCATGY | 1 cut(s) | 505 |
| PagI | TCATGA | 1 cut(s) | 580 |
| PciI | ACATGT | 1 cut(s) | 501 |
| PciSI | GCTCTTC | 1 cut(s) | 30 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 228 |
| PfeI | GAWTC | 1 cut(s) | 524 |
| PkrI | GCNGC | 6 cut(s) | 59, 113, 116, 175, 192, 306 |
| PleI | GAGTC | 1 cut(s) | 621 |
| PpsI | GAGTC | 1 cut(s) | 621 |
| PscI | ACATGT | 1 cut(s) | 501 |
| PshBI | ATTAAT | 1 cut(s) | 387 |
| PsiI | TTATAA | 1 cut(s) | 537 |
| PspFI | CCCAGC | 2 cut(s) | 13, 158 |
| PvuII | CAGCTG | 1 cut(s) | 13 |
| RsaI | GTAC | 1 cut(s) | 594 |
| RsaNI | GTAC | 1 cut(s) | 593 |
| RseI | CAYNNNNRTG | 1 cut(s) | 266 |
| SapI | GCTCTTC | 1 cut(s) | 30 |
| SaqAI | TTAA | 4 cut(s) | 75, 312, 387, 639 |
| SatI | GCNGC | 6 cut(s) | 58, 112, 115, 174, 191, 305 |
| Sau3AI | GATC | 2 cut(s) | 270, 583 |
| SchI | GAGTC | 1 cut(s) | 621 |
| SduI | GDGCHC | 1 cut(s) | 159 |
| SetI | ASST | 7 cut(s) | 9, 15, 151, 338, 417, 494, 598 |
| SfaNI | GCATC | 1 cut(s) | 486 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 266 |
| SmlI | CTYRAG | 2 cut(s) | 454, 638 |
| SmoI | CTYRAG | 2 cut(s) | 454, 638 |
| Sse9I | AATT | 4 cut(s) | 40, 469, 532, 632 |
| SsiI | CCGC | 5 cut(s) | 57, 305, 357, 393, 613 |
| SspMI | CTAG | 2 cut(s) | 333, 652 |
| StyI | CCWWGG | 2 cut(s) | 194, 596 |
| TaaI | ACNGT | 1 cut(s) | 379 |
| TaqI | TCGA | 2 cut(s) | 63, 184 |
| TasI | AATT | 4 cut(s) | 40, 469, 532, 632 |
| TauI | GCSGC | 2 cut(s) | 60, 307 |
| TfiI | GAWTC | 1 cut(s) | 524 |
| Tru1I | TTAA | 4 cut(s) | 75, 312, 387, 639 |
| Tru9I | TTAA | 4 cut(s) | 75, 312, 387, 639 |
| TseFI | GTSAC | 1 cut(s) | 104 |
| TseI | GCWGC | 4 cut(s) | 111, 114, 173, 190 |
| Tsp45I | GTSAC | 1 cut(s) | 104 |
| Vha464I | CTTAAG | 1 cut(s) | 638 |
| VspI | ATTAAT | 1 cut(s) | 387 |
| XapI | RAATTY | 1 cut(s) | 469 |
| XceI | RCATGY | 1 cut(s) | 505 |
| XspI | CTAG | 2 cut(s) | 333, 652 |