Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 64 - 145 | 1.3e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 166 |
| AciI | CCGC | 3 cut(s) | 218, 440, 443 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 173, 229 |
| AgsI | TTSAA | 2 cut(s) | 31, 49 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 393 |
| AjiI | CACGTC | 1 cut(s) | 38 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 326, 358 |
| AluBI | AGCT | 4 cut(s) | 163, 181, 308, 412 |
| AluI | AGCT | 4 cut(s) | 163, 181, 308, 412 |
| Alw26I | GTCTC | 2 cut(s) | 341, 380 |
| Aor13HI | TCCGGA | 1 cut(s) | 166 |
| AoxI | GGCC | 2 cut(s) | 104, 220 |
| ApeKI | GCWGC | 3 cut(s) | 160, 275, 409 |
| AspS9I | GGNCC | 2 cut(s) | 104, 220 |
| AsuHPI | GGTGA | 1 cut(s) | 364 |
| BbvI | GCAGC | 3 cut(s) | 172, 262, 421 |
| BccI | CCATC | 3 cut(s) | 35, 80, 191 |
| BcoDI | GTCTC | 2 cut(s) | 341, 380 |
| BfaI | CTAG | 2 cut(s) | 138, 326 |
| BfmI | CTRYAG | 1 cut(s) | 276 |
| BisI | GCNGC | 4 cut(s) | 161, 276, 410, 441 |
| BlsI | GCNGC | 4 cut(s) | 162, 277, 411, 442 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 393 |
| BmgBI | CACGTC | 1 cut(s) | 38 |
| BmgT120I | GGNCC | 2 cut(s) | 104, 220 |
| BmsI | GCATC | 2 cut(s) | 215, 304 |
| BsaWI | WCCGGW | 1 cut(s) | 166 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 173, 229 |
| Bse1I | ACTGG | 1 cut(s) | 299 |
| BseAI | TCCGGA | 1 cut(s) | 166 |
| BseGI | GGATG | 2 cut(s) | 91, 295 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 173, 229 |
| BseNI | ACTGG | 1 cut(s) | 299 |
| BseXI | GCAGC | 3 cut(s) | 172, 262, 421 |
| BsgI | GTGCAG | 2 cut(s) | 423, 428 |
| BshFI | GGCC | 2 cut(s) | 106, 222 |
| BsiSI | CCGG | 1 cut(s) | 167 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 173, 229 |
| BsmAI | GTCTC | 2 cut(s) | 341, 380 |
| BsmBI | CGTCTC | 1 cut(s) | 341 |
| BsnI | GGCC | 2 cut(s) | 106, 222 |
| Bsp13I | TCCGGA | 1 cut(s) | 166 |
| BspACI | CCGC | 3 cut(s) | 218, 440, 443 |
| BspANI | GGCC | 2 cut(s) | 106, 222 |
| BspEI | TCCGGA | 1 cut(s) | 166 |
| BspMAI | CTGCAG | 1 cut(s) | 280 |
| BsrI | ACTGG | 1 cut(s) | 299 |
| Bst4CI | ACNGT | 1 cut(s) | 352 |
| BstC8I | GCNNGC | 2 cut(s) | 158, 220 |
| BstDEI | CTNAG | 1 cut(s) | 398 |
| BstF5I | GGATG | 2 cut(s) | 91, 295 |
| BstMAI | GTCTC | 2 cut(s) | 341, 380 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 112 |
| BstSFI | CTRYAG | 1 cut(s) | 276 |
| BstV1I | GCAGC | 3 cut(s) | 172, 262, 421 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 337 |
| BsuRI | GGCC | 2 cut(s) | 106, 222 |
| BtrI | CACGTC | 1 cut(s) | 38 |
| BtsCI | GGATG | 2 cut(s) | 91, 295 |
| BtsI | GCAGTG | 1 cut(s) | 411 |
| BtsIMutI | CAGTG | 1 cut(s) | 411 |
| Cac8I | GCNNGC | 2 cut(s) | 158, 220 |
| Cfr13I | GGNCC | 2 cut(s) | 104, 220 |
| CviAII | CATG | 5 cut(s) | 56, 71, 95, 130, 331 |
| DdeI | CTNAG | 1 cut(s) | 398 |
| DriI | GACNNNNNGTC | 1 cut(s) | 393 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 393 |
| EciI | GGCGGA | 1 cut(s) | 458 |
| EcoT22I | ATGCAT | 1 cut(s) | 297 |
| Esp3I | CGTCTC | 1 cut(s) | 341 |
| FaeI | CATG | 5 cut(s) | 59, 74, 98, 133, 334 |
| FatI | CATG | 5 cut(s) | 55, 70, 94, 129, 330 |
| FauI | CCCGC | 1 cut(s) | 211 |
| Fnu4HI | GCNGC | 4 cut(s) | 161, 276, 410, 441 |
| FokI | GGATG | 2 cut(s) | 98, 282 |
| Fsp4HI | GCNGC | 4 cut(s) | 161, 276, 410, 441 |
| FspBI | CTAG | 2 cut(s) | 138, 326 |
| GluI | GCNGC | 4 cut(s) | 161, 276, 410, 441 |
| HaeIII | GGCC | 2 cut(s) | 106, 222 |
| HapII | CCGG | 1 cut(s) | 167 |
| Hin1II | CATG | 5 cut(s) | 59, 74, 98, 133, 334 |
| HincII | GTYRAC | 1 cut(s) | 126 |
| HindII | GTYRAC | 1 cut(s) | 126 |
| HpaI | GTTAAC | 1 cut(s) | 126 |
| HpaII | CCGG | 1 cut(s) | 167 |
| HphI | GGTGA | 1 cut(s) | 364 |
| Hpy166II | GTNNAC | 1 cut(s) | 126 |
| Hpy188I | TCNGA | 2 cut(s) | 211, 319 |
| Hpy188III | TCNNGA | 1 cut(s) | 167 |
| Hpy8I | GTNNAC | 1 cut(s) | 126 |
| HpyAV | CCTTC | 2 cut(s) | 349, 357 |
| HpyCH4III | ACNGT | 1 cut(s) | 352 |
| HpyCH4IV | ACGT | 1 cut(s) | 37 |
| HpyCH4V | TGCA | 9 cut(s) | 55, 70, 94, 115, 133, 278, 295, 404, 409 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 112 |
| HpyF3I | CTNAG | 1 cut(s) | 398 |
| HpySE526I | ACGT | 1 cut(s) | 37 |
| Hsp92II | CATG | 5 cut(s) | 59, 74, 98, 133, 334 |
| Kpn2I | TCCGGA | 1 cut(s) | 166 |
| KspAI | GTTAAC | 1 cut(s) | 126 |
| LpnPI | CCDG | 5 cut(s) | 101, 142, 180, 264, 312 |
| Lsp1109I | GCAGC | 3 cut(s) | 172, 262, 421 |
| LweI | GCATC | 2 cut(s) | 215, 304 |
| MaeI | CTAG | 2 cut(s) | 138, 326 |
| MaeII | ACGT | 1 cut(s) | 37 |
| MaeIII | GTNAC | 1 cut(s) | 321 |
| MluCI | AATT | 4 cut(s) | 108, 190, 288, 450 |
| MmeI | TCCRAC | 1 cut(s) | 324 |
| MnlI | CCTC | 5 cut(s) | 112, 167, 373, 439, 454 |
| Mph1103I | ATGCAT | 1 cut(s) | 297 |
| MroI | TCCGGA | 1 cut(s) | 166 |
| MseI | TTAA | 2 cut(s) | 125, 417 |
| MslI | CAYNNNNRTG | 2 cut(s) | 99, 335 |
| MspI | CCGG | 1 cut(s) | 167 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 112 |
| NlaIII | CATG | 5 cut(s) | 59, 74, 98, 133, 334 |
| NsiI | ATGCAT | 1 cut(s) | 297 |
| PkrI | GCNGC | 4 cut(s) | 162, 277, 411, 442 |
| PspPI | GGNCC | 2 cut(s) | 104, 220 |
| PstI | CTGCAG | 1 cut(s) | 280 |
| RseI | CAYNNNNRTG | 2 cut(s) | 99, 335 |
| SaqAI | TTAA | 2 cut(s) | 125, 417 |
| SatI | GCNGC | 4 cut(s) | 161, 276, 410, 441 |
| Sau96I | GGNCC | 2 cut(s) | 104, 220 |
| SetI | ASST | 8 cut(s) | 29, 40, 165, 183, 310, 368, 384, 414 |
| SfaNI | GCATC | 2 cut(s) | 215, 304 |
| SfcI | CTRYAG | 1 cut(s) | 276 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 99, 335 |
| Sse9I | AATT | 4 cut(s) | 108, 190, 288, 450 |
| SsiI | CCGC | 3 cut(s) | 218, 440, 443 |
| SspMI | CTAG | 2 cut(s) | 138, 326 |
| TaaI | ACNGT | 1 cut(s) | 352 |
| TaiI | ACGT | 1 cut(s) | 40 |
| TasI | AATT | 4 cut(s) | 108, 190, 288, 450 |
| TauI | GCSGC | 1 cut(s) | 443 |
| Tru1I | TTAA | 2 cut(s) | 125, 417 |
| Tru9I | TTAA | 2 cut(s) | 125, 417 |
| TscAI | CASTG | 1 cut(s) | 411 |
| TseI | GCWGC | 3 cut(s) | 160, 275, 409 |
| TspDTI | ATGAA | 2 cut(s) | 267, 347 |
| TspRI | CASTG | 1 cut(s) | 411 |
| XspI | CTAG | 2 cut(s) | 138, 326 |
| Zsp2I | ATGCAT | 1 cut(s) | 297 |