Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 77 - 162 | 1e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 530 |
| AclWI | GGATC | 1 cut(s) | 371 |
| AcsI | RAATTY | 2 cut(s) | 149, 482 |
| AcuI | CTGAAG | 1 cut(s) | 411 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 325 |
| AgsI | TTSAA | 5 cut(s) | 172, 335, 412, 442, 521 |
| AluBI | AGCT | 6 cut(s) | 14, 131, 224, 345, 389, 479 |
| AluI | AGCT | 6 cut(s) | 14, 131, 224, 345, 389, 479 |
| AlwI | GGATC | 1 cut(s) | 371 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 227 |
| Ama87I | CYCGRG | 1 cut(s) | 447 |
| AoxI | GGCC | 1 cut(s) | 527 |
| ApeKI | GCWGC | 1 cut(s) | 221 |
| ApoI | RAATTY | 2 cut(s) | 149, 482 |
| AspS9I | GGNCC | 1 cut(s) | 527 |
| AsuC2I | CCSGG | 2 cut(s) | 448, 449 |
| AsuHPI | GGTGA | 3 cut(s) | 158, 340, 427 |
| AvaI | CYCGRG | 1 cut(s) | 447 |
| BanII | GRGCYC | 1 cut(s) | 110 |
| BbvI | GCAGC | 1 cut(s) | 233 |
| BcnI | CCSGG | 2 cut(s) | 448, 449 |
| BfmI | CTRYAG | 2 cut(s) | 219, 418 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 535 |
| BisI | GCNGC | 2 cut(s) | 222, 530 |
| BlsI | GCNGC | 2 cut(s) | 223, 531 |
| Bme1390I | CCNGG | 2 cut(s) | 448, 449 |
| BmeT110I | CYCGRG | 1 cut(s) | 447 |
| BmgT120I | GGNCC | 1 cut(s) | 527 |
| BmrFI | CCNGG | 2 cut(s) | 448, 449 |
| BmrI | ACTGGG | 1 cut(s) | 317 |
| BmuI | ACTGGG | 1 cut(s) | 317 |
| BpuMI | CCSGG | 2 cut(s) | 448, 449 |
| BsaJI | CCNNGG | 2 cut(s) | 446, 447 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 325 |
| Bse1I | ACTGG | 1 cut(s) | 323 |
| BseDI | CCNNGG | 2 cut(s) | 446, 447 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 325 |
| BseMII | CTCAG | 2 cut(s) | 9, 302 |
| BseNI | ACTGG | 1 cut(s) | 323 |
| BseRI | GAGGAG | 1 cut(s) | 35 |
| BseXI | GCAGC | 1 cut(s) | 233 |
| BshFI | GGCC | 1 cut(s) | 529 |
| BsiHKCI | CYCGRG | 1 cut(s) | 447 |
| BsiSI | CCGG | 1 cut(s) | 448 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 325 |
| BsmI | GAATGC | 1 cut(s) | 458 |
| BsnI | GGCC | 1 cut(s) | 529 |
| BsoBI | CYCGRG | 1 cut(s) | 447 |
| Bsp1286I | GDGCHC | 1 cut(s) | 110 |
| Bsp143I | GATC | 2 cut(s) | 307, 376 |
| BspACI | CCGC | 1 cut(s) | 530 |
| BspANI | GGCC | 1 cut(s) | 529 |
| BspCNI | CTCAG | 2 cut(s) | 10, 303 |
| BspMAI | CTGCAG | 2 cut(s) | 223, 422 |
| BspPI | GGATC | 1 cut(s) | 371 |
| BsrI | ACTGG | 1 cut(s) | 323 |
| BssECI | CCNNGG | 2 cut(s) | 446, 447 |
| BssMI | GATC | 2 cut(s) | 307, 376 |
| Bst4CI | ACNGT | 1 cut(s) | 36 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 227 |
| BstDEI | CTNAG | 2 cut(s) | 18, 311 |
| BstKTI | GATC | 2 cut(s) | 310, 379 |
| BstMBI | GATC | 2 cut(s) | 307, 376 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 114, 227, 535 |
| BstSCI | CCNGG | 2 cut(s) | 446, 447 |
| BstSFI | CTRYAG | 2 cut(s) | 219, 418 |
| BstV1I | GCAGC | 1 cut(s) | 233 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 86 |
| BsuRI | GGCC | 1 cut(s) | 529 |
| BtsI | GCAGTG | 1 cut(s) | 427 |
| BtsIMutI | CAGTG | 3 cut(s) | 257, 330, 427 |
| CaiI | CAGNNNCTG | 1 cut(s) | 227 |
| Cfr13I | GGNCC | 1 cut(s) | 527 |
| Cfr9I | CCCGGG | 1 cut(s) | 447 |
| CseI | GACGC | 1 cut(s) | 347 |
| CviAII | CATG | 3 cut(s) | 86, 470, 524 |
| DdeI | CTNAG | 2 cut(s) | 18, 311 |
| DpnI | GATC | 2 cut(s) | 309, 378 |
| DpnII | GATC | 2 cut(s) | 307, 376 |
| Eco24I | GRGCYC | 1 cut(s) | 110 |
| Eco57I | CTGAAG | 1 cut(s) | 411 |
| Eco88I | CYCGRG | 1 cut(s) | 447 |
| EcoT38I | GRGCYC | 1 cut(s) | 110 |
| FaeI | CATG | 3 cut(s) | 89, 473, 527 |
| FaiI | YATR | 9 cut(s) | 45, 87, 96, 295, 471, 495, 509, 525, 542 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 83, 115 |
| FatI | CATG | 3 cut(s) | 85, 469, 523 |
| Fnu4HI | GCNGC | 2 cut(s) | 222, 530 |
| FriOI | GRGCYC | 1 cut(s) | 110 |
| Fsp4HI | GCNGC | 2 cut(s) | 222, 530 |
| GluI | GCNGC | 2 cut(s) | 222, 530 |
| HaeIII | GGCC | 1 cut(s) | 529 |
| HapII | CCGG | 1 cut(s) | 448 |
| HgaI | GACGC | 1 cut(s) | 347 |
| Hin1II | CATG | 3 cut(s) | 89, 473, 527 |
| HpaII | CCGG | 1 cut(s) | 448 |
| HphI | GGTGA | 3 cut(s) | 158, 340, 427 |
| Hpy188I | TCNGA | 3 cut(s) | 105, 312, 376 |
| HpyAV | CCTTC | 2 cut(s) | 92, 448 |
| HpyCH4III | ACNGT | 1 cut(s) | 36 |
| HpyCH4IV | ACGT | 1 cut(s) | 65 |
| HpyCH4V | TGCA | 6 cut(s) | 117, 181, 221, 420, 425, 456 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 114, 227, 535 |
| HpyF3I | CTNAG | 2 cut(s) | 18, 311 |
| HpySE526I | ACGT | 1 cut(s) | 65 |
| Hsp92II | CATG | 3 cut(s) | 89, 473, 527 |
| Kzo9I | GATC | 2 cut(s) | 307, 376 |
| LpnPI | CCDG | 3 cut(s) | 231, 336, 461 |
| Lsp1109I | GCAGC | 1 cut(s) | 233 |
| MaeII | ACGT | 1 cut(s) | 65 |
| MaeIII | GTNAC | 2 cut(s) | 46, 433 |
| MalI | GATC | 2 cut(s) | 309, 378 |
| MboI | GATC | 2 cut(s) | 307, 376 |
| MboII | GAAGA | 1 cut(s) | 404 |
| MhlI | GDGCHC | 1 cut(s) | 110 |
| MluCI | AATT | 2 cut(s) | 149, 482 |
| MnlI | CCTC | 6 cut(s) | 13, 16, 151, 222, 329, 382 |
| MseI | TTAA | 3 cut(s) | 68, 153, 282 |
| MslI | CAYNNNNRTG | 1 cut(s) | 84 |
| MspI | CCGG | 1 cut(s) | 448 |
| MspR9I | CCNGG | 2 cut(s) | 448, 449 |
| Mva1269I | GAATGC | 1 cut(s) | 458 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 114, 227, 535 |
| NciI | CCSGG | 2 cut(s) | 448, 449 |
| NdeII | GATC | 2 cut(s) | 307, 376 |
| NlaIII | CATG | 3 cut(s) | 89, 473, 527 |
| NmuCI | GTSAC | 1 cut(s) | 433 |
| PctI | GAATGC | 1 cut(s) | 458 |
| PkrI | GCNGC | 2 cut(s) | 223, 531 |
| PspPI | GGNCC | 1 cut(s) | 527 |
| PstI | CTGCAG | 2 cut(s) | 223, 422 |
| PstNI | CAGNNNCTG | 1 cut(s) | 227 |
| RseI | CAYNNNNRTG | 1 cut(s) | 84 |
| SaqAI | TTAA | 3 cut(s) | 68, 153, 282 |
| SatI | GCNGC | 2 cut(s) | 222, 530 |
| Sau3AI | GATC | 2 cut(s) | 307, 376 |
| Sau96I | GGNCC | 1 cut(s) | 527 |
| ScrFI | CCNGG | 2 cut(s) | 448, 449 |
| SduI | GDGCHC | 1 cut(s) | 110 |
| SfcI | CTRYAG | 2 cut(s) | 219, 418 |
| SmaI | CCCGGG | 1 cut(s) | 449 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 84 |
| Sse9I | AATT | 2 cut(s) | 149, 482 |
| SsiI | CCGC | 1 cut(s) | 530 |
| StyD4I | CCNGG | 2 cut(s) | 446, 447 |
| TaaI | ACNGT | 1 cut(s) | 36 |
| TaiI | ACGT | 1 cut(s) | 68 |
| TasI | AATT | 2 cut(s) | 149, 482 |
| TauI | GCSGC | 1 cut(s) | 532 |
| Tru1I | TTAA | 3 cut(s) | 68, 153, 282 |
| Tru9I | TTAA | 3 cut(s) | 68, 153, 282 |
| TscAI | CASTG | 3 cut(s) | 264, 330, 427 |
| TseFI | GTSAC | 1 cut(s) | 433 |
| TseI | GCWGC | 1 cut(s) | 221 |
| Tsp45I | GTSAC | 1 cut(s) | 433 |
| TspDTI | ATGAA | 3 cut(s) | 74, 475, 510 |
| TspMI | CCCGGG | 1 cut(s) | 447 |
| TspRI | CASTG | 3 cut(s) | 264, 330, 427 |
| XapI | RAATTY | 2 cut(s) | 149, 482 |
| XmaI | CCCGGG | 1 cut(s) | 447 |