Rroxscaffold_1G00040660

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000072
Physical Location & Seq
Forward (+)
58417410 .. 58429172
11763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00040660.1

Sequence Viewer

Length: 711 bp
ATGGTAGGTTTTGTGAGTCCACAAACATGGGAATTTCTCACTCTGGTAAATGGATTGCATTTCTGTCTTCAAGCGGTGTTTACTCGATTGGAAATAGAGGGCGATGCTCAAAACATTTTCATGGCTTTAAATTCTGATAAGGAATACCTCAGTCCAGATGGTGCACTAGTTGATCAAGCCGAGCCCACTATTGCATTGGAGGCGTTAAAGCACATGCCCTTCCAAATGACATTGTTTCTCTTAGAGCAGATGTACCAAGAAGCCAATTGGGTGACCAATTGGAGAGGAGCATTTGTTGGCCATGCTGTGGGACAAAATTGCCCAGGCATTCACTGTGCAGCACCTGGGGACCACTTGCCTAGGCAATTGAAGCACAAAATTAAGGAAGTAGATGAGAAGAAAACGGGGGAGGATTCGATGCACCGACATAAATGGATGGCATATCGAGTGAACCCGGGAATAGCAAGGCTACTTGCAGCGCCAAGAGGCAAAGAAGGAGAAGTTACTCGTTTGATCCTCCGGTACCAAGACTTCGGTGAGAGAGGAGGAGGCAACGACGTCGGTGTTTGTGTGGATATTGGATCCGCCGAAGAGATCGGCGTCGGCGCCGGATATGCATCGTCGTCTGCGGCGGCGGTGGCCTCGCCTTTGGACTTGTTACTCTTCTTGGCCTTCTTCACGGCCGACTTGGTGTCCTTGGACGACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

236

Amino Acids

25.92

Weight (kDa)

5.06

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 561
Acc65I GGTACC 1 cut(s) 522
AccB1I GGYRCC 2 cut(s) 522, 605
AccB7I CCANNNNNTGG 1 cut(s) 307
AciI CCGC 5 cut(s) 74, 585, 629, 632, 635
AclWI GGATC 3 cut(s) 508, 576, 589
AcoI YGGCCR 2 cut(s) 298, 681
AcsI RAATTY 2 cut(s) 32, 130
AcyI GRCGYC 3 cut(s) 558, 600, 606
AfaI GTAC 2 cut(s) 254, 524
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 2 cut(s) 71, 370
AhdI GACNNNNNGTC 1 cut(s) 691
AhlI ACTAGT 1 cut(s) 166
AjnI CCWGG 2 cut(s) 322, 343
Alw21I GWGCWC 1 cut(s) 166
Alw44I GTGCAC 1 cut(s) 162
AlwI GGATC 3 cut(s) 508, 576, 589
AlwNI CAGNNNCTG 1 cut(s) 344
Ama87I CYCGRG 1 cut(s) 454
AoxI GGCC 4 cut(s) 298, 639, 669, 681
ApaLI GTGCAC 1 cut(s) 162
ApeKI GCWGC 2 cut(s) 338, 476
ApoI RAATTY 2 cut(s) 32, 130
Asp718I GGTACC 1 cut(s) 522
AspA2I CCTAGG 1 cut(s) 359
AspLEI GCGC 2 cut(s) 481, 608
AspS9I GGNCC 1 cut(s) 349
AsuC2I CCSGG 2 cut(s) 455, 456
AsuHPI GGTGA 2 cut(s) 283, 548
AvaI CYCGRG 1 cut(s) 454
AvaII GGWCC 1 cut(s) 349
AvrII CCTAGG 1 cut(s) 359
BaeGI GKGCMC 1 cut(s) 166
BalI TGGCCA 1 cut(s) 300
BamHI GGATCC 1 cut(s) 581
BanI GGYRCC 2 cut(s) 522, 605
BanII GRGCYC 1 cut(s) 186
BarI GAAGNNNNNNTAC 2 cut(s) 515, 547
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 2 cut(s) 350, 488
BccI CCATC 2 cut(s) 152, 430
BceAI ACGGC 1 cut(s) 696
BcgI CGANNNNNNTGC 2 cut(s) 541, 575
BciT130I CCWGG 2 cut(s) 324, 345
BclI TGATCA 1 cut(s) 172
BcnI CCSGG 2 cut(s) 455, 456
BcuI ACTAGT 1 cut(s) 166
BfaI CTAG 2 cut(s) 167, 360
BfoI RGCGCY 2 cut(s) 482, 609
BisI GCNGC 4 cut(s) 339, 477, 630, 633
BlnI CCTAGG 1 cut(s) 359
BlsI GCNGC 4 cut(s) 340, 478, 631, 634
Bme1390I CCNGG 4 cut(s) 324, 345, 455, 456
Bme18I GGWCC 1 cut(s) 349
BmeRI GACNNNNNGTC 1 cut(s) 691
BmeT110I CYCGRG 1 cut(s) 454
BmgT120I GGNCC 1 cut(s) 349
BmiI GGNNCC 4 cut(s) 350, 524, 583, 607
BmrFI CCNGG 4 cut(s) 324, 345, 455, 456
BmsI GCATC 3 cut(s) 94, 408, 626
BpiI GAAGAC 1 cut(s) 59
BpuMI CCSGG 2 cut(s) 455, 456
BsaBI GATNNNNATC 1 cut(s) 616
BsaHI GRCGYC 3 cut(s) 558, 600, 606
BsaJI CCNNGG 5 cut(s) 322, 344, 359, 454, 696
BsaWI WCCGGW 1 cut(s) 519
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse8I GATNNNNATC 1 cut(s) 616
BseBI CCWGG 2 cut(s) 324, 345
BseDI CCNNGG 5 cut(s) 322, 344, 359, 454, 696
BseGI GGATG 1 cut(s) 441
BseJI GATNNNNATC 1 cut(s) 616
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 163
BseRI GAGGAG 3 cut(s) 300, 558, 561
BseSI GKGCMC 1 cut(s) 166
BseX3I CGGCCG 1 cut(s) 681
BseXI GCAGC 2 cut(s) 350, 488
BsgI GTGCAG 1 cut(s) 357
Bsh1285I CGRYCG 1 cut(s) 684
BshFI GGCC 4 cut(s) 300, 641, 671, 683
BshNI GGYRCC 2 cut(s) 522, 605
BsiEI CGRYCG 1 cut(s) 684
BsiHKAI GWGCWC 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 454
BsiSI CCGG 3 cut(s) 455, 520, 609
BslFI GGGAC 2 cut(s) 324, 362
BslI CCNNNNNNNGG 1 cut(s) 307
BsmFI GGGAC 2 cut(s) 324, 362
BsmI GAATGC 1 cut(s) 327
BsnI GGCC 4 cut(s) 300, 641, 671, 683
BsoBI CYCGRG 1 cut(s) 454
Bsp1286I GDGCHC 2 cut(s) 166, 186
Bsp143I GATC 4 cut(s) 172, 513, 581, 594
BspACI CCGC 5 cut(s) 74, 585, 629, 632, 635
BspANI GGCC 4 cut(s) 300, 641, 671, 683
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 4 cut(s) 350, 524, 583, 607
BspPI GGATC 3 cut(s) 508, 576, 589
BspT107I GGYRCC 2 cut(s) 522, 605
BssECI CCNNGG 5 cut(s) 322, 344, 359, 454, 696
BssMI GATC 4 cut(s) 172, 513, 581, 594
BssNI GRCGYC 3 cut(s) 558, 600, 606
BssT1I CCWWGG 2 cut(s) 359, 696
Bst2UI CCWGG 2 cut(s) 324, 345
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 2 cut(s) 585, 668
BstACI GRCGYC 3 cut(s) 558, 600, 606
BstDEI CTNAG 2 cut(s) 149, 241
BstEII GGTNACC 1 cut(s) 271
BstF5I GGATG 1 cut(s) 441
BstH2I RGCGCY 2 cut(s) 482, 609
BstHHI GCGC 2 cut(s) 481, 608
BstKTI GATC 4 cut(s) 175, 516, 584, 597
BstMBI GATC 4 cut(s) 172, 513, 581, 594
BstMCI CGRYCG 1 cut(s) 684
BstMWI GCNNNNNNNGC 4 cut(s) 200, 370, 614, 638
BstNI CCWGG 2 cut(s) 324, 345
BstNSI RCATGY 1 cut(s) 217
BstPI GGTNACC 1 cut(s) 271
BstSCI CCNGG 4 cut(s) 322, 343, 453, 454
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 350, 488
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 581
BstXI CCANNNNNNTGG 1 cut(s) 27
BstYI RGATCY 1 cut(s) 581
BstZI CGGCCG 1 cut(s) 681
BsuRI GGCC 4 cut(s) 300, 641, 671, 683
BtgZI GCGATG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 441
BtsIMutI CAGTG 1 cut(s) 331
CaiI CAGNNNCTG 1 cut(s) 344
CfoI GCGC 2 cut(s) 481, 608
Cfr13I GGNCC 1 cut(s) 349
Cfr9I CCCGGG 1 cut(s) 454
CseI GACGC 1 cut(s) 589
Csp6I GTAC 2 cut(s) 253, 523
CviAII CATG 4 cut(s) 27, 121, 214, 302
CviJI RGCY 9 cut(s) 125, 179, 184, 263, 300, 469, 641, 671, 683
CviKI_1 RGCY 9 cut(s) 125, 179, 184, 263, 300, 469, 641, 671, 683
CviQI GTAC 2 cut(s) 253, 523
DdeI CTNAG 2 cut(s) 149, 241
DinI GGCGCC 1 cut(s) 607
DpnI GATC 4 cut(s) 174, 515, 583, 596
DpnII GATC 4 cut(s) 172, 513, 581, 594
DraI TTTAAA 1 cut(s) 129
DriI GACNNNNNGTC 1 cut(s) 691
EaeI YGGCCR 2 cut(s) 298, 681
EagI CGGCCG 1 cut(s) 681
Eam1104I CTCTTC 2 cut(s) 585, 668
Eam1105I GACNNNNNGTC 1 cut(s) 691
EarI CTCTTC 2 cut(s) 585, 668
EciI GGCGGA 1 cut(s) 574
EclXI CGGCCG 1 cut(s) 681
Eco130I CCWWGG 2 cut(s) 359, 696
Eco24I GRGCYC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 349
Eco52I CGGCCG 1 cut(s) 681
Eco88I CYCGRG 1 cut(s) 454
Eco91I GGTNACC 1 cut(s) 271
EcoO65I GGTNACC 1 cut(s) 271
EcoRII CCWGG 2 cut(s) 322, 343
EcoT14I CCWWGG 2 cut(s) 359, 696
EcoT22I ATGCAT 1 cut(s) 619
EcoT38I GRGCYC 1 cut(s) 186
EgeI GGCGCC 1 cut(s) 607
EheI GGCGCC 1 cut(s) 607
ErhI CCWWGG 2 cut(s) 359, 696
FaeI CATG 4 cut(s) 30, 124, 217, 305
FaiI YATR 7 cut(s) 28, 122, 215, 303, 429, 442, 615
FaqI GGGAC 2 cut(s) 324, 362
FatI CATG 4 cut(s) 26, 120, 213, 301
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 4 cut(s) 339, 477, 630, 633
FokI GGATG 1 cut(s) 448
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 4 cut(s) 339, 477, 630, 633
FspBI CTAG 2 cut(s) 167, 360
GlaI GCGC 2 cut(s) 480, 607
GluI GCNGC 4 cut(s) 339, 477, 630, 633
HaeII RGCGCY 2 cut(s) 482, 609
HaeIII GGCC 4 cut(s) 300, 641, 671, 683
HapII CCGG 3 cut(s) 455, 520, 609
HgaI GACGC 1 cut(s) 589
HhaI GCGC 2 cut(s) 481, 608
Hin1I GRCGYC 3 cut(s) 558, 600, 606
Hin1II CATG 4 cut(s) 30, 124, 217, 305
Hin6I GCGC 2 cut(s) 479, 606
HinP1I GCGC 2 cut(s) 479, 606
HinfI GANTC 2 cut(s) 16, 413
HpaII CCGG 3 cut(s) 455, 520, 609
HphI GGTGA 2 cut(s) 283, 548
Hpy166II GTNNAC 4 cut(s) 20, 81, 164, 451
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 4 cut(s) 20, 81, 164, 451
Hpy99I CGWCG 5 cut(s) 560, 563, 605, 625, 707
HpyAV CCTTC 3 cut(s) 229, 488, 682
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 558
HpyCH4V TGCA 7 cut(s) 58, 164, 194, 338, 421, 476, 617
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 370, 614, 638
HpyF3I CTNAG 2 cut(s) 149, 241
HpySE526I ACGT 1 cut(s) 558
Hsp92I GRCGYC 3 cut(s) 558, 600, 606
Hsp92II CATG 4 cut(s) 30, 124, 217, 305
HspAI GCGC 2 cut(s) 479, 606
KasI GGCGCC 1 cut(s) 605
KpnI GGTACC 1 cut(s) 526
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 4 cut(s) 172, 513, 581, 594
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 9 cut(s) 29, 168, 309, 330, 336, 357, 468, 533, 622
Lsp1109I GCAGC 2 cut(s) 350, 488
LweI GCATC 3 cut(s) 94, 408, 626
MaeI CTAG 2 cut(s) 167, 360
MaeII ACGT 1 cut(s) 558
MaeIII GTNAC 3 cut(s) 271, 502, 657
MalI GATC 4 cut(s) 174, 515, 583, 596
MboI GATC 4 cut(s) 172, 513, 581, 594
MboII GAAGA 5 cut(s) 59, 409, 602, 655, 667
MfeI CAATTG 3 cut(s) 265, 277, 365
MflI RGATCY 1 cut(s) 581
MhlI GDGCHC 2 cut(s) 166, 186
MlsI TGGCCA 1 cut(s) 300
MluCI AATT 7 cut(s) 32, 130, 265, 277, 316, 365, 378
MluNI TGGCCA 1 cut(s) 300
Mly113I GGCGCC 1 cut(s) 606
MlyI GAGTC 1 cut(s) 25
Mox20I TGGCCA 1 cut(s) 300
Mph1103I ATGCAT 1 cut(s) 619
MscI TGGCCA 1 cut(s) 300
MseI TTAA 3 cut(s) 128, 206, 381
MslI CAYNNNNRTG 2 cut(s) 25, 119
Msp20I TGGCCA 1 cut(s) 300
MspI CCGG 3 cut(s) 455, 520, 609
MspR9I CCNGG 4 cut(s) 324, 345, 455, 456
MunI CAATTG 3 cut(s) 265, 277, 365
Mva1269I GAATGC 1 cut(s) 327
MvaI CCWGG 2 cut(s) 324, 345
MwoI GCNNNNNNNGC 4 cut(s) 200, 370, 614, 638
NarI GGCGCC 1 cut(s) 606
NciI CCSGG 2 cut(s) 455, 456
NdeII GATC 4 cut(s) 172, 513, 581, 594
NlaIII CATG 4 cut(s) 30, 124, 217, 305
NlaIV GGNNCC 4 cut(s) 350, 524, 583, 607
NmeAIII GCCGAG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 271
NsiI ATGCAT 1 cut(s) 619
NspI RCATGY 1 cut(s) 217
PctI GAATGC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 413
PflMI CCANNNNNTGG 1 cut(s) 307
PkrI GCNGC 4 cut(s) 340, 478, 631, 634
PleI GAGTC 1 cut(s) 24
PluTI GGCGCC 1 cut(s) 609
PpsI GAGTC 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 322, 343
PspEI GGTNACC 1 cut(s) 271
PspGI CCWGG 2 cut(s) 322, 343
PspN4I GGNNCC 4 cut(s) 350, 524, 583, 607
PspPI GGNCC 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 344
PsuI RGATCY 1 cut(s) 581
RsaI GTAC 2 cut(s) 254, 524
RsaNI GTAC 2 cut(s) 253, 523
RseI CAYNNNNRTG 2 cut(s) 25, 119
SaqAI TTAA 3 cut(s) 128, 206, 381
SatI GCNGC 4 cut(s) 339, 477, 630, 633
Sau3AI GATC 4 cut(s) 172, 513, 581, 594
Sau96I GGNCC 1 cut(s) 349
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 4 cut(s) 324, 345, 455, 456
SduI GDGCHC 2 cut(s) 166, 186
SetI ASST 4 cut(s) 10, 150, 346, 561
SfaNI GCATC 3 cut(s) 94, 408, 626
SfoI GGCGCC 1 cut(s) 607
SinI GGWCC 1 cut(s) 349
SmaI CCCGGG 1 cut(s) 456
SmiMI CAYNNNNRTG 2 cut(s) 25, 119
SpeI ACTAGT 1 cut(s) 166
Sse9I AATT 7 cut(s) 32, 130, 265, 277, 316, 365, 378
SsiI CCGC 5 cut(s) 74, 585, 629, 632, 635
SspDI GGCGCC 1 cut(s) 605
SspMI CTAG 2 cut(s) 167, 360
StyD4I CCNGG 4 cut(s) 322, 343, 453, 454
StyI CCWWGG 2 cut(s) 359, 696
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 1 cut(s) 561
TaqI TCGA 3 cut(s) 85, 416, 445
TasI AATT 7 cut(s) 32, 130, 265, 277, 316, 365, 378
TauI GCSGC 2 cut(s) 632, 635
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 3 cut(s) 128, 206, 381
Tru9I TTAA 3 cut(s) 128, 206, 381
TscAI CASTG 1 cut(s) 338
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 2 cut(s) 338, 476
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 109
TspMI CCCGGG 1 cut(s) 454
TspRI CASTG 1 cut(s) 338
Van91I CCANNNNNTGG 1 cut(s) 307
VneI GTGCAC 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 349
XapI RAATTY 2 cut(s) 32, 130
XceI RCATGY 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XmaI CCCGGG 1 cut(s) 454
XmaJI CCTAGG 1 cut(s) 359
XspI CTAG 2 cut(s) 167, 360
ZraI GACGTC 1 cut(s) 559
Zsp2I ATGCAT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.