Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 879 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 230 |
| AatII | GACGTC | 1 cut(s) | 554 |
| Acc36I | ACCTGC | 1 cut(s) | 359 |
| AccI | GTMKAC | 2 cut(s) | 222, 808 |
| AccII | CGCG | 5 cut(s) | 141, 162, 164, 166, 1317 |
| AclWI | GGATC | 4 cut(s) | 242, 449, 923, 1010 |
| AcoI | YGGCCR | 3 cut(s) | 184, 612, 709 |
| AcsI | RAATTY | 1 cut(s) | 1382 |
| AcuI | CTGAAG | 3 cut(s) | 468, 606, 875 |
| AcyI | GRCGYC | 2 cut(s) | 216, 551 |
| AfaI | GTAC | 4 cut(s) | 308, 649, 1181, 1188 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 25, 1003 |
| AflIII | ACRYGT | 1 cut(s) | 1315 |
| AgsI | TTSAA | 6 cut(s) | 479, 784, 1074, 1168, 1205, 1438 |
| AhlI | ACTAGT | 1 cut(s) | 380 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 451, 483 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1257, 1289 |
| AluBI | AGCT | 7 cut(s) | 400, 423, 626, 1010, 1148, 1402, 1441 |
| AluI | AGCT | 7 cut(s) | 400, 423, 626, 1010, 1148, 1402, 1441 |
| Alw21I | GWGCWC | 1 cut(s) | 500 |
| Alw26I | GTCTC | 2 cut(s) | 1102, 1419 |
| AlwI | GGATC | 4 cut(s) | 242, 449, 923, 1010 |
| AoxI | GGCC | 6 cut(s) | 6, 27, 184, 612, 709, 1326 |
| ApeKI | GCWGC | 4 cut(s) | 626, 1145, 1211, 1441 |
| ApoI | RAATTY | 1 cut(s) | 1382 |
| AspLEI | GCGC | 2 cut(s) | 164, 166 |
| AspS9I | GGNCC | 3 cut(s) | 6, 28, 1326 |
| AsuC2I | CCSGG | 1 cut(s) | 959 |
| AsuHPI | GGTGA | 3 cut(s) | 833, 934, 1264 |
| BalI | TGGCCA | 1 cut(s) | 614 |
| BanII | GRGCYC | 2 cut(s) | 178, 293 |
| Bbv12I | GWGCWC | 1 cut(s) | 500 |
| BbvCI | CCTCAGC | 1 cut(s) | 1113 |
| BbvI | GCAGC | 4 cut(s) | 613, 1157, 1198, 1428 |
| BccI | CCATC | 8 cut(s) | 533, 638, 686, 785, 871, 1153, 1317, 1506 |
| BceAI | ACGGC | 1 cut(s) | 199 |
| BcnI | CCSGG | 1 cut(s) | 959 |
| BcoDI | GTCTC | 2 cut(s) | 1102, 1419 |
| BcuI | ACTAGT | 1 cut(s) | 380 |
| BfaI | CTAG | 3 cut(s) | 381, 1094, 1371 |
| BfmI | CTRYAG | 2 cut(s) | 361, 1505 |
| BfuAI | ACCTGC | 1 cut(s) | 359 |
| BglII | AGATCT | 2 cut(s) | 441, 1267 |
| Bme1390I | CCNGG | 1 cut(s) | 959 |
| BmgT120I | GGNCC | 3 cut(s) | 6, 28, 1326 |
| BmiI | GGNNCC | 2 cut(s) | 241, 834 |
| BmrFI | CCNGG | 1 cut(s) | 959 |
| BmrI | ACTGGG | 1 cut(s) | 730 |
| BmsI | GCATC | 2 cut(s) | 562, 1163 |
| BmuI | ACTGGG | 1 cut(s) | 730 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1113 |
| BpuMI | CCSGG | 1 cut(s) | 959 |
| Bsa29I | ATCGAT | 2 cut(s) | 321, 1157 |
| BsaAI | YACGTR | 1 cut(s) | 1477 |
| BsaHI | GRCGYC | 2 cut(s) | 216, 551 |
| BsaJI | CCNNGG | 3 cut(s) | 181, 712, 958 |
| BsaWI | WCCGGW | 1 cut(s) | 326 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1257, 1287 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 25, 1003 |
| Bse118I | RCCGGY | 1 cut(s) | 236 |
| Bse1I | ACTGG | 3 cut(s) | 511, 736, 1084 |
| Bse3DI | GCAATG | 2 cut(s) | 802, 897 |
| BseCI | ATCGAT | 2 cut(s) | 321, 1157 |
| BseDI | CCNNGG | 3 cut(s) | 181, 712, 958 |
| BseGI | GGATG | 3 cut(s) | 577, 697, 1328 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 25, 1003 |
| BseMI | GCAATG | 2 cut(s) | 802, 897 |
| BseMII | CTCAG | 5 cut(s) | 243, 492, 990, 1104, 1394 |
| BseNI | ACTGG | 3 cut(s) | 511, 736, 1084 |
| BsePI | GCGCGC | 1 cut(s) | 162 |
| BseRI | GAGGAG | 5 cut(s) | 23, 50, 182, 232, 415 |
| BseX3I | CGGCCG | 1 cut(s) | 184 |
| BseXI | GCAGC | 4 cut(s) | 613, 1157, 1198, 1428 |
| BsgI | GTGCAG | 4 cut(s) | 335, 535, 664, 1457 |
| Bsh1236I | CGCG | 5 cut(s) | 141, 162, 164, 166, 1317 |
| Bsh1285I | CGRYCG | 2 cut(s) | 154, 187 |
| BshFI | GGCC | 6 cut(s) | 8, 29, 186, 614, 711, 1328 |
| BshVI | ATCGAT | 2 cut(s) | 321, 1157 |
| BsiEI | CGRYCG | 2 cut(s) | 154, 187 |
| BsiHKAI | GWGCWC | 1 cut(s) | 500 |
| BsiSI | CCGG | 3 cut(s) | 237, 327, 958 |
| BslFI | GGGAC | 2 cut(s) | 562, 837 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 25, 1003 |
| BsmAI | GTCTC | 2 cut(s) | 1102, 1419 |
| BsmFI | GGGAC | 2 cut(s) | 562, 837 |
| BsnI | GGCC | 6 cut(s) | 8, 29, 186, 614, 711, 1328 |
| Bsp1286I | GDGCHC | 3 cut(s) | 178, 293, 500 |
| Bsp1407I | TGTACA | 1 cut(s) | 1186 |
| Bsp143I | GATC | 8 cut(s) | 21, 247, 318, 441, 454, 928, 1015, 1267 |
| BspANI | GGCC | 6 cut(s) | 8, 29, 186, 614, 711, 1328 |
| BspCNI | CTCAG | 5 cut(s) | 242, 493, 989, 1105, 1395 |
| BspDI | ATCGAT | 2 cut(s) | 321, 1157 |
| BspFNI | CGCG | 5 cut(s) | 141, 162, 164, 166, 1317 |
| BspLI | GGNNCC | 2 cut(s) | 241, 834 |
| BspMAI | CTGCAG | 1 cut(s) | 365 |
| BspMI | ACCTGC | 1 cut(s) | 359 |
| BspPI | GGATC | 4 cut(s) | 242, 449, 923, 1010 |
| BsrDI | GCAATG | 2 cut(s) | 802, 897 |
| BsrFI | RCCGGY | 1 cut(s) | 236 |
| BsrGI | TGTACA | 1 cut(s) | 1186 |
| BsrI | ACTGG | 3 cut(s) | 511, 736, 1084 |
| BssAI | RCCGGY | 1 cut(s) | 236 |
| BssECI | CCNNGG | 3 cut(s) | 181, 712, 958 |
| BssHII | GCGCGC | 1 cut(s) | 162 |
| BssMI | GATC | 8 cut(s) | 21, 247, 318, 441, 454, 928, 1015, 1267 |
| BssNAI | GTATAC | 1 cut(s) | 809 |
| BssNI | GRCGYC | 2 cut(s) | 216, 551 |
| BssT1I | CCWWGG | 1 cut(s) | 712 |
| Bst1107I | GTATAC | 1 cut(s) | 809 |
| Bst4CI | ACNGT | 1 cut(s) | 1106 |
| Bst6I | CTCTTC | 2 cut(s) | 625, 1170 |
| BstACI | GRCGYC | 2 cut(s) | 216, 551 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 360, 369, 1151 |
| BstAUI | TGTACA | 1 cut(s) | 1186 |
| BstBAI | YACGTR | 1 cut(s) | 1477 |
| BstC8I | GCNNGC | 5 cut(s) | 6, 164, 178, 238, 1309 |
| BstDEI | CTNAG | 5 cut(s) | 229, 501, 976, 1113, 1403 |
| BstDSI | CCRYGG | 1 cut(s) | 181 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1001 |
| BstF5I | GGATG | 3 cut(s) | 577, 697, 1328 |
| BstFNI | CGCG | 5 cut(s) | 141, 162, 164, 166, 1317 |
| BstHHI | GCGC | 2 cut(s) | 164, 166 |
| BstKTI | GATC | 8 cut(s) | 24, 250, 321, 444, 457, 931, 1018, 1270 |
| BstMAI | GTCTC | 2 cut(s) | 1102, 1419 |
| BstMBI | GATC | 8 cut(s) | 21, 247, 318, 441, 454, 928, 1015, 1267 |
| BstMCI | CGRYCG | 2 cut(s) | 154, 187 |
| BstSCI | CCNGG | 1 cut(s) | 957 |
| BstSFI | CTRYAG | 2 cut(s) | 361, 1505 |
| BstUI | CGCG | 5 cut(s) | 141, 162, 164, 166, 1317 |
| BstV1I | GCAGC | 4 cut(s) | 613, 1157, 1198, 1428 |
| BstX2I | RGATCY | 3 cut(s) | 441, 454, 1267 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 103, 383, 1108, 1319 |
| BstYI | RGATCY | 3 cut(s) | 441, 454, 1267 |
| BstZ17I | GTATAC | 1 cut(s) | 809 |
| BstZI | CGGCCG | 1 cut(s) | 184 |
| Bsu15I | ATCGAT | 2 cut(s) | 321, 1157 |
| BsuRI | GGCC | 6 cut(s) | 8, 29, 186, 614, 711, 1328 |
| BsuTUI | ATCGAT | 2 cut(s) | 321, 1157 |
| BtgI | CCRYGG | 1 cut(s) | 181 |
| BtgZI | GCGATG | 1 cut(s) | 552 |
| BtsCI | GGATG | 3 cut(s) | 577, 697, 1328 |
| BtsIMutI | CAGTG | 3 cut(s) | 518, 1033, 1091 |
| BveI | ACCTGC | 1 cut(s) | 359 |
| Cac8I | GCNNGC | 5 cut(s) | 6, 164, 178, 238, 1309 |
| CfoI | GCGC | 2 cut(s) | 164, 166 |
| Cfr10I | RCCGGY | 1 cut(s) | 236 |
| Cfr13I | GGNCC | 3 cut(s) | 6, 28, 1326 |
| ClaI | ATCGAT | 2 cut(s) | 321, 1157 |
| CseI | GACGC | 2 cut(s) | 130, 205 |
| Csp6I | GTAC | 4 cut(s) | 307, 648, 1180, 1187 |
| CviAII | CATG | 1 cut(s) | 589 |
| CviQI | GTAC | 4 cut(s) | 307, 648, 1180, 1187 |
| DdeI | CTNAG | 5 cut(s) | 229, 501, 976, 1113, 1403 |
| DpnI | GATC | 8 cut(s) | 23, 249, 320, 443, 456, 930, 1017, 1269 |
| DpnII | GATC | 8 cut(s) | 21, 247, 318, 441, 454, 928, 1015, 1267 |
| DraI | TTTAAA | 1 cut(s) | 885 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 230 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 230 |
| EaeI | YGGCCR | 3 cut(s) | 184, 612, 709 |
| EagI | CGGCCG | 1 cut(s) | 184 |
| Eam1104I | CTCTTC | 2 cut(s) | 625, 1170 |
| EarI | CTCTTC | 2 cut(s) | 625, 1170 |
| EciI | GGCGGA | 1 cut(s) | 58 |
| EclXI | CGGCCG | 1 cut(s) | 184 |
| Eco130I | CCWWGG | 1 cut(s) | 712 |
| Eco24I | GRGCYC | 2 cut(s) | 178, 293 |
| Eco52I | CGGCCG | 1 cut(s) | 184 |
| Eco57I | CTGAAG | 3 cut(s) | 468, 606, 875 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1001 |
| EcoT14I | CCWWGG | 1 cut(s) | 712 |
| EcoT38I | GRGCYC | 2 cut(s) | 178, 293 |
| ErhI | CCWWGG | 1 cut(s) | 712 |
| FaeI | CATG | 1 cut(s) | 592 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1167, 1199 |
| FaqI | GGGAC | 2 cut(s) | 562, 837 |
| FatI | CATG | 1 cut(s) | 588 |
| FauI | CCCGC | 3 cut(s) | 132, 185, 427 |
| FblI | GTMKAC | 2 cut(s) | 222, 808 |
| FokI | GGATG | 3 cut(s) | 584, 704, 1335 |
| FriOI | GRGCYC | 2 cut(s) | 178, 293 |
| FspBI | CTAG | 3 cut(s) | 381, 1094, 1371 |
| GlaI | GCGC | 2 cut(s) | 163, 165 |
| HaeIII | GGCC | 6 cut(s) | 8, 29, 186, 614, 711, 1328 |
| HapII | CCGG | 3 cut(s) | 237, 327, 958 |
| HgaI | GACGC | 2 cut(s) | 130, 205 |
| HhaI | GCGC | 2 cut(s) | 164, 166 |
| Hin1I | GRCGYC | 2 cut(s) | 216, 551 |
| Hin1II | CATG | 1 cut(s) | 592 |
| Hin6I | GCGC | 2 cut(s) | 162, 164 |
| HinP1I | GCGC | 2 cut(s) | 162, 164 |
| HincII | GTYRAC | 2 cut(s) | 223, 973 |
| HindII | GTYRAC | 2 cut(s) | 223, 973 |
| HindIII | AAGCTT | 1 cut(s) | 1008 |
| HinfI | GANTC | 4 cut(s) | 394, 413, 592, 974 |
| HpaII | CCGG | 3 cut(s) | 237, 327, 958 |
| HphI | GGTGA | 3 cut(s) | 833, 934, 1264 |
| Hpy166II | GTNNAC | 5 cut(s) | 223, 386, 809, 973, 1492 |
| Hpy188I | TCNGA | 6 cut(s) | 247, 454, 502, 571, 894, 1236 |
| Hpy188III | TCNNGA | 1 cut(s) | 1422 |
| Hpy8I | GTNNAC | 5 cut(s) | 223, 386, 809, 973, 1492 |
| Hpy99I | CGWCG | 6 cut(s) | 206, 209, 212, 221, 224, 263 |
| HpyAV | CCTTC | 6 cut(s) | 75, 130, 778, 949, 1199, 1231 |
| HpyCH4III | ACNGT | 1 cut(s) | 1106 |
| HpyCH4IV | ACGT | 3 cut(s) | 201, 551, 1476 |
| HpyF3I | CTNAG | 5 cut(s) | 229, 501, 976, 1113, 1403 |
| HpySE526I | ACGT | 3 cut(s) | 201, 551, 1476 |
| Hsp92I | GRCGYC | 2 cut(s) | 216, 551 |
| Hsp92II | CATG | 1 cut(s) | 592 |
| HspAI | GCGC | 2 cut(s) | 162, 164 |
| KroI | GCCGGC | 1 cut(s) | 236 |
| KroNI | GCCGGC | 1 cut(s) | 238 |
| Kzo9I | GATC | 8 cut(s) | 21, 247, 318, 441, 454, 928, 1015, 1267 |
| LmnI | GCTCC | 3 cut(s) | 245, 428, 832 |
| Lsp1109I | GCAGC | 4 cut(s) | 613, 1157, 1198, 1428 |
| LweI | GCATC | 2 cut(s) | 562, 1163 |
| MaeI | CTAG | 3 cut(s) | 381, 1094, 1371 |
| MaeII | ACGT | 3 cut(s) | 201, 551, 1476 |
| MaeIII | GTNAC | 5 cut(s) | 167, 506, 518, 1252, 1363 |
| MalI | GATC | 8 cut(s) | 23, 249, 320, 443, 456, 930, 1017, 1269 |
| MauBI | CGCGCGCG | 1 cut(s) | 162 |
| MboI | GATC | 8 cut(s) | 21, 247, 318, 441, 454, 928, 1015, 1267 |
| MboII | GAAGA | 4 cut(s) | 612, 881, 1187, 1493 |
| MfeI | CAATTG | 1 cut(s) | 924 |
| MflI | RGATCY | 3 cut(s) | 441, 454, 1267 |
| MhlI | GDGCHC | 3 cut(s) | 178, 293, 500 |
| MlsI | TGGCCA | 1 cut(s) | 614 |
| MluCI | AATT | 8 cut(s) | 284, 355, 367, 403, 880, 924, 1257, 1382 |
| MluI | ACGCGT | 1 cut(s) | 1315 |
| MluNI | TGGCCA | 1 cut(s) | 614 |
| MlyI | GAGTC | 1 cut(s) | 968 |
| MmeI | TCCRAC | 3 cut(s) | 169, 1125, 1300 |
| Mox20I | TGGCCA | 1 cut(s) | 614 |
| MroNI | GCCGGC | 1 cut(s) | 236 |
| MscI | TGGCCA | 1 cut(s) | 614 |
| MseI | TTAA | 1 cut(s) | 884 |
| Msp20I | TGGCCA | 1 cut(s) | 614 |
| MspA1I | CMGCKG | 4 cut(s) | 127, 626, 1148, 1402 |
| MspI | CCGG | 3 cut(s) | 237, 327, 958 |
| MspR9I | CCNGG | 1 cut(s) | 959 |
| MunI | CAATTG | 1 cut(s) | 924 |
| MvnI | CGCG | 5 cut(s) | 141, 162, 164, 166, 1317 |
| NaeI | GCCGGC | 1 cut(s) | 238 |
| NciI | CCSGG | 1 cut(s) | 959 |
| NdeII | GATC | 8 cut(s) | 21, 247, 318, 441, 454, 928, 1015, 1267 |
| NgoMIV | GCCGGC | 1 cut(s) | 236 |
| NlaIII | CATG | 1 cut(s) | 592 |
| NlaIV | GGNNCC | 2 cut(s) | 241, 834 |
| NmuCI | GTSAC | 2 cut(s) | 167, 1252 |
| PauI | GCGCGC | 1 cut(s) | 162 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 213, 216 |
| PdiI | GCCGGC | 1 cut(s) | 238 |
| PfeI | GAWTC | 3 cut(s) | 394, 413, 592 |
| PleI | GAGTC | 1 cut(s) | 968 |
| PpsI | GAGTC | 1 cut(s) | 968 |
| Ppu21I | YACGTR | 1 cut(s) | 1477 |
| PsiI | TTATAA | 1 cut(s) | 879 |
| PspN4I | GGNNCC | 2 cut(s) | 241, 834 |
| PspPI | GGNCC | 3 cut(s) | 6, 28, 1326 |
| PstI | CTGCAG | 1 cut(s) | 365 |
| PsuI | RGATCY | 3 cut(s) | 441, 454, 1267 |
| PteI | GCGCGC | 1 cut(s) | 162 |
| PvuII | CAGCTG | 3 cut(s) | 626, 1148, 1402 |
| RsaI | GTAC | 4 cut(s) | 308, 649, 1181, 1188 |
| RsaNI | GTAC | 4 cut(s) | 307, 648, 1180, 1187 |
| SalI | GTCGAC | 1 cut(s) | 221 |
| SaqAI | TTAA | 1 cut(s) | 884 |
| Sau3AI | GATC | 8 cut(s) | 21, 247, 318, 441, 454, 928, 1015, 1267 |
| Sau96I | GGNCC | 3 cut(s) | 6, 28, 1326 |
| SchI | GAGTC | 1 cut(s) | 968 |
| ScrFI | CCNGG | 1 cut(s) | 959 |
| SduI | GDGCHC | 3 cut(s) | 178, 293, 500 |
| SfaNI | GCATC | 2 cut(s) | 562, 1163 |
| SfcI | CTRYAG | 2 cut(s) | 361, 1505 |
| SmiI | ATTTAAAT | 1 cut(s) | 885 |
| SpeI | ACTAGT | 1 cut(s) | 380 |
| Sse9I | AATT | 8 cut(s) | 284, 355, 367, 403, 880, 924, 1257, 1382 |
| SspMI | CTAG | 3 cut(s) | 381, 1094, 1371 |
| StyD4I | CCNGG | 1 cut(s) | 957 |
| StyI | CCWWGG | 1 cut(s) | 712 |
| SwaI | ATTTAAAT | 1 cut(s) | 885 |
| TaaI | ACNGT | 1 cut(s) | 1106 |
| TaiI | ACGT | 3 cut(s) | 204, 554, 1479 |
| TaqI | TCGA | 6 cut(s) | 150, 222, 321, 585, 748, 1157 |
| TaqII | GACCGA | 1 cut(s) | 186 |
| TasI | AATT | 8 cut(s) | 284, 355, 367, 403, 880, 924, 1257, 1382 |
| TatI | WGTACW | 2 cut(s) | 306, 1186 |
| TauI | GCSGC | 7 cut(s) | 74, 77, 80, 83, 95, 189, 216 |
| TfiI | GAWTC | 3 cut(s) | 394, 413, 592 |
| Tru1I | TTAA | 1 cut(s) | 884 |
| Tru9I | TTAA | 1 cut(s) | 884 |
| TscAI | CASTG | 3 cut(s) | 518, 1033, 1091 |
| TseFI | GTSAC | 2 cut(s) | 167, 1252 |
| TseI | GCWGC | 4 cut(s) | 626, 1145, 1211, 1441 |
| Tsp45I | GTSAC | 2 cut(s) | 167, 1252 |
| TspDTI | ATGAA | 1 cut(s) | 1395 |
| TspGWI | ACGGA | 1 cut(s) | 1339 |
| TspRI | CASTG | 3 cut(s) | 518, 1033, 1091 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1001 |
| XapI | RAATTY | 1 cut(s) | 1382 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 536 |
| XmiI | GTMKAC | 2 cut(s) | 222, 808 |
| XspI | CTAG | 3 cut(s) | 381, 1094, 1371 |
| ZraI | GACGTC | 1 cut(s) | 552 |