ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRRNT_2 | PF08263 | 42 - 76 | 8.4e-06 | Leucine rich repeat N-terminal domain |
| LRR_8 | PF13855 | 109 - 166 | 1.8e-06 | Leucine rich repeat |
| RVT_1 | PF00078 | 1000 - 1225 | 2e-30 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| zf-RVT | PF13966 | 1512 - 1605 | 1.5e-12 | zinc-binding in reverse transcriptase |
| RVT_3 | PF13456 | 1715 - 1836 | 9.6e-18 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 5198 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1204 |
| AatII | GACGTC | 1 cut(s) | 846 |
| Acc36I | ACCTGC | 6 cut(s) | 303, 1477, 2641, 3076, 5002, 5053 |
| AccB1I | GGYRCC | 1 cut(s) | 3369 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 406, 2134 |
| AccBSI | CCGCTC | 1 cut(s) | 5239 |
| AccI | GTMKAC | 2 cut(s) | 2888, 3208 |
| AccII | CGCG | 4 cut(s) | 1101, 1123, 3551, 4165 |
| AccIII | TCCGGA | 1 cut(s) | 3301 |
| AclI | AACGTT | 1 cut(s) | 2310 |
| AcoI | YGGCCR | 5 cut(s) | 624, 739, 1096, 1707, 3237 |
| AcsI | RAATTY | 8 cut(s) | 92, 1158, 2564, 2751, 3852, 4081, 5423, 5621 |
| AcuI | CTGAAG | 2 cut(s) | 410, 2421 |
| AcyI | GRCGYC | 4 cut(s) | 363, 843, 3370, 5527 |
| AdeI | CACNNNGTG | 2 cut(s) | 3505, 3521 |
| AflII | CTTAAG | 1 cut(s) | 5255 |
| AflIII | ACRYGT | 5 cut(s) | 198, 669, 1975, 3829, 4442 |
| AgeI | ACCGGT | 3 cut(s) | 863, 1486, 4606 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3399 |
| AhlI | ACTAGT | 1 cut(s) | 1456 |
| AjiI | CACGTC | 2 cut(s) | 199, 1049 |
| AjnI | CCWGG | 8 cut(s) | 137, 652, 997, 1343, 2842, 3130, 4349, 5289 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1552, 1584, 4346, 4378 |
| Alw21I | GWGCWC | 3 cut(s) | 206, 456, 3526 |
| Alw26I | GTCTC | 6 cut(s) | 9, 973, 3184, 3407, 4717, 5118 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1469, 2849 |
| Ama87I | CYCGRG | 3 cut(s) | 1131, 1658, 1751 |
| Aor13HI | TCCGGA | 1 cut(s) | 3301 |
| ApoI | RAATTY | 8 cut(s) | 92, 1158, 2564, 2751, 3852, 4081, 5423, 5621 |
| AseI | ATTAAT | 1 cut(s) | 3960 |
| AsiGI | ACCGGT | 3 cut(s) | 863, 1486, 4606 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 2296, 2752, 3174, 4461 |
| AspLEI | GCGC | 5 cut(s) | 1125, 3122, 3372, 4165, 4167 |
| AspS9I | GGNCC | 9 cut(s) | 160, 791, 2125, 2152, 2712, 2828, 2839, 2846, 5550 |
| AsuC2I | CCSGG | 3 cut(s) | 1706, 4854, 5515 |
| AsuII | TTCGAA | 5 cut(s) | 501, 3059, 4733, 4841, 5449 |
| AvaI | CYCGRG | 3 cut(s) | 1131, 1658, 1751 |
| AvaII | GGWCC | 5 cut(s) | 160, 2152, 2712, 2828, 5550 |
| AxyI | CCTNAGG | 1 cut(s) | 2985 |
| BalI | TGGCCA | 2 cut(s) | 626, 3239 |
| BamHI | GGATCC | 2 cut(s) | 3415, 4312 |
| BanI | GGYRCC | 1 cut(s) | 3369 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4535, 4567 |
| BauI | CACGAG | 1 cut(s) | 3516 |
| BbsI | GAAGAC | 4 cut(s) | 2, 211, 683, 3554 |
| Bbv12I | GWGCWC | 3 cut(s) | 206, 456, 3526 |
| BbvCI | CCTCAGC | 1 cut(s) | 3450 |
| BceAI | ACGGC | 1 cut(s) | 4684 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2534, 2568, 2753, 2787 |
| BciT130I | CCWGG | 8 cut(s) | 139, 654, 999, 1345, 2844, 3132, 4351, 5291 |
| BclI | TGATCA | 3 cut(s) | 1510, 3285, 5001 |
| BcnI | CCSGG | 3 cut(s) | 1706, 4854, 5515 |
| BcoDI | GTCTC | 6 cut(s) | 9, 973, 3184, 3407, 4717, 5118 |
| BcuI | ACTAGT | 1 cut(s) | 1456 |
| BfmI | CTRYAG | 5 cut(s) | 1060, 2739, 2889, 3510, 4995 |
| BfoI | RGCGCY | 1 cut(s) | 3373 |
| BfrI | CTTAAG | 1 cut(s) | 5255 |
| BfuAI | ACCTGC | 6 cut(s) | 303, 1477, 2641, 3076, 5002, 5053 |
| BglII | AGATCT | 3 cut(s) | 535, 1016, 2464 |
| BmcAI | AGTACT | 1 cut(s) | 476 |
| Bme18I | GGWCC | 5 cut(s) | 160, 2152, 2712, 2828, 5550 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3399 |
| BmeT110I | CYCGRG | 3 cut(s) | 1131, 1658, 1751 |
| BmgBI | CACGTC | 2 cut(s) | 199, 1049 |
| BmgT120I | GGNCC | 9 cut(s) | 160, 791, 2125, 2152, 2712, 2828, 2839, 2846, 5550 |
| BmrI | ACTGGG | 3 cut(s) | 1416, 3892, 5441 |
| BmuI | ACTGGG | 3 cut(s) | 1416, 3892, 5441 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2157 |
| BpiI | GAAGAC | 4 cut(s) | 2, 211, 683, 3554 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4379, 4411 |
| BpmI | CTGGAG | 4 cut(s) | 285, 2169, 2489, 4017 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3450 |
| Bpu14I | TTCGAA | 5 cut(s) | 501, 3059, 4733, 4841, 5449 |
| BpuEI | CTTGAG | 3 cut(s) | 455, 5109, 5318 |
| BpuMI | CCSGG | 3 cut(s) | 1706, 4854, 5515 |
| BsaAI | YACGTR | 1 cut(s) | 4786 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3313 |
| BsaHI | GRCGYC | 4 cut(s) | 363, 843, 3370, 5527 |
| BsaI | GGTCTC | 2 cut(s) | 3407, 5118 |
| BsaWI | WCCGGW | 5 cut(s) | 863, 935, 1486, 3301, 4606 |
| Bse118I | RCCGGY | 7 cut(s) | 257, 287, 604, 716, 863, 1486, 4606 |
| Bse21I | CCTNAGG | 1 cut(s) | 2985 |
| Bse3DI | GCAATG | 5 cut(s) | 282, 3672, 4038, 4569, 5021 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3313 |
| BseAI | TCCGGA | 1 cut(s) | 3301 |
| BseBI | CCWGG | 8 cut(s) | 139, 654, 999, 1345, 2844, 3132, 4351, 5291 |
| BseJI | GATNNNNATC | 1 cut(s) | 3313 |
| BseMI | GCAATG | 5 cut(s) | 282, 3672, 4038, 4569, 5021 |
| BseMII | CTCAG | 8 cut(s) | 427, 599, 3366, 3441, 3471, 5262, 5319, 5516 |
| BsePI | GCGCGC | 1 cut(s) | 4163 |
| BseX3I | CGGCCG | 1 cut(s) | 739 |
| BseYI | CCCAGC | 2 cut(s) | 519, 1039 |
| BsgI | GTGCAG | 3 cut(s) | 208, 1029, 1455 |
| Bsh1236I | CGCG | 4 cut(s) | 1101, 1123, 3551, 4165 |
| Bsh1285I | CGRYCG | 2 cut(s) | 742, 1824 |
| BshNI | GGYRCC | 1 cut(s) | 3369 |
| BshTI | ACCGGT | 3 cut(s) | 863, 1486, 4606 |
| BsiEI | CGRYCG | 2 cut(s) | 742, 1824 |
| BsiHKAI | GWGCWC | 3 cut(s) | 206, 456, 3526 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1131, 1658, 1751 |
| BslFI | GGGAC | 5 cut(s) | 353, 1035, 1432, 2841, 3113 |
| BsmAI | GTCTC | 6 cut(s) | 9, 973, 3184, 3407, 4717, 5118 |
| BsmBI | CGTCTC | 2 cut(s) | 3184, 4717 |
| BsmFI | GGGAC | 5 cut(s) | 353, 1035, 1432, 2841, 3113 |
| BsmI | GAATGC | 2 cut(s) | 648, 993 |
| Bso31I | GGTCTC | 2 cut(s) | 3407, 5118 |
| BsoBI | CYCGRG | 3 cut(s) | 1131, 1658, 1751 |
| Bsp119I | TTCGAA | 5 cut(s) | 501, 3059, 4733, 4841, 5449 |
| Bsp1286I | GDGCHC | 3 cut(s) | 206, 456, 3526 |
| Bsp13I | TCCGGA | 1 cut(s) | 3301 |
| BspCNI | CTCAG | 8 cut(s) | 426, 598, 3365, 3442, 3472, 5263, 5320, 5515 |
| BspEI | TCCGGA | 1 cut(s) | 3301 |
| BspFNI | CGCG | 4 cut(s) | 1101, 1123, 3551, 4165 |
| BspHI | TCATGA | 1 cut(s) | 3745 |
| BspMAI | CTGCAG | 2 cut(s) | 1064, 4999 |
| BspMI | ACCTGC | 6 cut(s) | 303, 1477, 2641, 3076, 5002, 5053 |
| BspQI | GCTCTTC | 2 cut(s) | 530, 818 |
| BspT104I | TTCGAA | 5 cut(s) | 501, 3059, 4733, 4841, 5449 |
| BspT107I | GGYRCC | 1 cut(s) | 3369 |
| BspTI | CTTAAG | 1 cut(s) | 5255 |
| BspTNI | GGTCTC | 2 cut(s) | 3407, 5118 |
| BsrBI | CCGCTC | 1 cut(s) | 5239 |
| BsrDI | GCAATG | 5 cut(s) | 282, 3672, 4038, 4569, 5021 |
| BsrFI | RCCGGY | 7 cut(s) | 257, 287, 604, 716, 863, 1486, 4606 |
| BssAI | RCCGGY | 7 cut(s) | 257, 287, 604, 716, 863, 1486, 4606 |
| BssHII | GCGCGC | 1 cut(s) | 4163 |
| BssNI | GRCGYC | 4 cut(s) | 363, 843, 3370, 5527 |
| BssSI | CACGAG | 1 cut(s) | 3516 |
| BssT1I | CCWWGG | 6 cut(s) | 104, 114, 1739, 2715, 3240, 4316 |
| Bst2BI | CACGAG | 1 cut(s) | 3516 |
| Bst2UI | CCWGG | 8 cut(s) | 139, 654, 999, 1345, 2844, 3132, 4351, 5291 |
| BstACI | GRCGYC | 4 cut(s) | 363, 843, 3370, 5527 |
| BstAFI | CTTAAG | 1 cut(s) | 5255 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 990, 3521, 5483 |
| BstBAI | YACGTR | 1 cut(s) | 4786 |
| BstBI | TTCGAA | 5 cut(s) | 501, 3059, 4733, 4841, 5449 |
| BstDSI | CCRYGG | 2 cut(s) | 1053, 1099 |
| BstFNI | CGCG | 4 cut(s) | 1101, 1123, 3551, 4165 |
| BstH2I | RGCGCY | 1 cut(s) | 3373 |
| BstHHI | GCGC | 5 cut(s) | 1125, 3122, 3372, 4165, 4167 |
| BstMAI | GTCTC | 6 cut(s) | 9, 973, 3184, 3407, 4717, 5118 |
| BstMCI | CGRYCG | 2 cut(s) | 742, 1824 |
| BstNI | CCWGG | 8 cut(s) | 139, 654, 999, 1345, 2844, 3132, 4351, 5291 |
| BstNSI | RCATGY | 4 cut(s) | 673, 1979, 2768, 4446 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2157 |
| BstSFI | CTRYAG | 5 cut(s) | 1060, 2739, 2889, 3510, 4995 |
| BstUI | CGCG | 4 cut(s) | 1101, 1123, 3551, 4165 |
| BstV2I | GAAGAC | 4 cut(s) | 2, 211, 683, 3554 |
| BstX2I | RGATCY | 7 cut(s) | 409, 481, 535, 1016, 2464, 3415, 4312 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1647, 1740 |
| BstYI | RGATCY | 7 cut(s) | 409, 481, 535, 1016, 2464, 3415, 4312 |
| BstZI | CGGCCG | 1 cut(s) | 739 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2985 |
| BtgI | CCRYGG | 2 cut(s) | 1053, 1099 |
| BtgZI | GCGATG | 1 cut(s) | 1194 |
| BtrI | CACGTC | 2 cut(s) | 199, 1049 |
| BtsI | GCAGTG | 3 cut(s) | 954, 5004, 5289 |
| BtsIMutI | CAGTG | 9 cut(s) | 954, 2155, 3360, 3945, 4545, 4742, 4914, 5004, 5289 |
| BveI | ACCTGC | 6 cut(s) | 303, 1477, 2641, 3076, 5002, 5053 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1469, 2849 |
| CciI | TCATGA | 1 cut(s) | 3745 |
| CfoI | GCGC | 5 cut(s) | 1125, 3122, 3372, 4165, 4167 |
| Cfr10I | RCCGGY | 7 cut(s) | 257, 287, 604, 716, 863, 1486, 4606 |
| Cfr13I | GGNCC | 9 cut(s) | 160, 791, 2125, 2152, 2712, 2828, 2839, 2846, 5550 |
| Cfr42I | CCGCGG | 1 cut(s) | 1102 |
| CseI | GACGC | 3 cut(s) | 352, 688, 5516 |
| CspAI | ACCGGT | 3 cut(s) | 863, 1486, 4606 |
| DinI | GGCGCC | 1 cut(s) | 3371 |
| DraI | TTTAAA | 1 cut(s) | 4371 |
| DraIII | CACNNNGTG | 2 cut(s) | 3505, 3521 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1204 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3399 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1204 |
| EaeI | YGGCCR | 5 cut(s) | 624, 739, 1096, 1707, 3237 |
| EagI | CGGCCG | 1 cut(s) | 739 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3399 |
| EciI | GGCGGA | 2 cut(s) | 793, 1689 |
| EclXI | CGGCCG | 1 cut(s) | 739 |
| Eco130I | CCWWGG | 6 cut(s) | 104, 114, 1739, 2715, 3240, 4316 |
| Eco147I | AGGCCT | 1 cut(s) | 312 |
| Eco31I | GGTCTC | 2 cut(s) | 3407, 5118 |
| Eco32I | GATATC | 1 cut(s) | 3755 |
| Eco47I | GGWCC | 5 cut(s) | 160, 2152, 2712, 2828, 5550 |
| Eco52I | CGGCCG | 1 cut(s) | 739 |
| Eco57I | CTGAAG | 2 cut(s) | 410, 2421 |
| Eco81I | CCTNAGG | 1 cut(s) | 2985 |
| Eco88I | CYCGRG | 3 cut(s) | 1131, 1658, 1751 |
| EcoO109I | RGGNCCY | 6 cut(s) | 791, 2712, 2828, 2839, 2846, 5550 |
| EcoRI | GAATTC | 1 cut(s) | 1158 |
| EcoRII | CCWGG | 8 cut(s) | 137, 652, 997, 1343, 2842, 3130, 4349, 5289 |
| EcoRV | GATATC | 1 cut(s) | 3755 |
| EcoT14I | CCWWGG | 6 cut(s) | 104, 114, 1739, 2715, 3240, 4316 |
| EcoT22I | ATGCAT | 1 cut(s) | 5155 |
| EgeI | GGCGCC | 1 cut(s) | 3371 |
| EheI | GGCGCC | 1 cut(s) | 3371 |
| ErhI | CCWWGG | 6 cut(s) | 104, 114, 1739, 2715, 3240, 4316 |
| Esp3I | CGTCTC | 2 cut(s) | 3184, 4717 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 4449, 4481, 4908, 4940 |
| FaqI | GGGAC | 5 cut(s) | 353, 1035, 1432, 2841, 3113 |
| FauI | CCCGC | 4 cut(s) | 1097, 1272, 1512, 2376 |
| FbaI | TGATCA | 3 cut(s) | 1510, 3285, 5001 |
| FblI | GTMKAC | 2 cut(s) | 2888, 3208 |
| GlaI | GCGC | 5 cut(s) | 1124, 3121, 3371, 4164, 4166 |
| GsaI | CCCAGC | 2 cut(s) | 523, 1043 |
| GsuI | CTGGAG | 4 cut(s) | 285, 2169, 2489, 4017 |
| HaeII | RGCGCY | 1 cut(s) | 3373 |
| HgaI | GACGC | 3 cut(s) | 352, 688, 5516 |
| HhaI | GCGC | 5 cut(s) | 1125, 3122, 3372, 4165, 4167 |
| Hin1I | GRCGYC | 4 cut(s) | 363, 843, 3370, 5527 |
| Hin6I | GCGC | 5 cut(s) | 1123, 3120, 3370, 4163, 4165 |
| HinP1I | GCGC | 5 cut(s) | 1123, 3120, 3370, 4163, 4165 |
| HincII | GTYRAC | 2 cut(s) | 2690, 4985 |
| HindII | GTYRAC | 2 cut(s) | 2690, 4985 |
| HindIII | AAGCTT | 2 cut(s) | 376, 3227 |
| Hpy99I | CGWCG | 5 cut(s) | 21, 368, 848, 1957, 2043 |
| Hsp92I | GRCGYC | 4 cut(s) | 363, 843, 3370, 5527 |
| HspAI | GCGC | 5 cut(s) | 1123, 3120, 3370, 4163, 4165 |
| KasI | GGCGCC | 1 cut(s) | 3369 |
| Kpn2I | TCCGGA | 1 cut(s) | 3301 |
| KroI | GCCGGC | 2 cut(s) | 257, 287 |
| KroNI | GCCGGC | 2 cut(s) | 259, 289 |
| Ksp22I | TGATCA | 3 cut(s) | 1510, 3285, 5001 |
| KspI | CCGCGG | 1 cut(s) | 1102 |
| LguI | GCTCTTC | 2 cut(s) | 530, 818 |
| MbiI | CCGCTC | 1 cut(s) | 5239 |
| MfeI | CAATTG | 1 cut(s) | 890 |
| MflI | RGATCY | 7 cut(s) | 409, 481, 535, 1016, 2464, 3415, 4312 |
| MhlI | GDGCHC | 3 cut(s) | 206, 456, 3526 |
| MlsI | TGGCCA | 2 cut(s) | 626, 3239 |
| MluNI | TGGCCA | 2 cut(s) | 626, 3239 |
| Mly113I | GGCGCC | 1 cut(s) | 3370 |
| MlyI | GAGTC | 4 cut(s) | 77, 225, 1342, 4672 |
| Mox20I | TGGCCA | 2 cut(s) | 626, 3239 |
| Mph1103I | ATGCAT | 1 cut(s) | 5155 |
| MroI | TCCGGA | 1 cut(s) | 3301 |
| MroNI | GCCGGC | 2 cut(s) | 257, 287 |
| MroXI | GAANNNNTTC | 4 cut(s) | 2296, 2752, 3174, 4461 |
| MscI | TGGCCA | 2 cut(s) | 626, 3239 |
| MslI | CAYNNNNRTG | 5 cut(s) | 449, 1356, 1572, 3150, 4795 |
| Msp20I | TGGCCA | 2 cut(s) | 626, 3239 |
| MspA1I | CMGCKG | 6 cut(s) | 1043, 1101, 1478, 1685, 1778, 2521 |
| MspCI | CTTAAG | 1 cut(s) | 5255 |
| MunI | CAATTG | 1 cut(s) | 890 |
| Mva1269I | GAATGC | 2 cut(s) | 648, 993 |
| MvaI | CCWGG | 8 cut(s) | 139, 654, 999, 1345, 2844, 3132, 4351, 5291 |
| MvnI | CGCG | 4 cut(s) | 1101, 1123, 3551, 4165 |
| NaeI | GCCGGC | 2 cut(s) | 259, 289 |
| NarI | GGCGCC | 1 cut(s) | 3370 |
| NciI | CCSGG | 3 cut(s) | 1706, 4854, 5515 |
| NgoMIV | GCCGGC | 2 cut(s) | 257, 287 |
| NmeAIII | GCCGAG | 1 cut(s) | 2563 |
| NmuCI | GTSAC | 4 cut(s) | 1111, 1545, 4345, 4710 |
| NsiI | ATGCAT | 1 cut(s) | 5155 |
| NspI | RCATGY | 4 cut(s) | 673, 1979, 2768, 4446 |
| NspV | TTCGAA | 5 cut(s) | 501, 3059, 4733, 4841, 5449 |
| PaeI | GCATGC | 1 cut(s) | 2768 |
| PagI | TCATGA | 1 cut(s) | 3745 |
| PasI | CCCWGGG | 2 cut(s) | 2843, 3131 |
| PauI | GCGCGC | 1 cut(s) | 4163 |
| PceI | AGGCCT | 1 cut(s) | 312 |
| PciI | ACATGT | 3 cut(s) | 669, 1975, 4442 |
| PciSI | GCTCTTC | 2 cut(s) | 530, 818 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 13, 195, 507, 2074 |
| PctI | GAATGC | 2 cut(s) | 648, 993 |
| PdiI | GCCGGC | 2 cut(s) | 259, 289 |
| PdmI | GAANNNNTTC | 4 cut(s) | 2296, 2752, 3174, 4461 |
| PflFI | GACNNNGTC | 1 cut(s) | 1294 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 406, 2134 |
| PinAI | ACCGGT | 3 cut(s) | 863, 1486, 4606 |
| PleI | GAGTC | 4 cut(s) | 77, 224, 1342, 4671 |
| PluTI | GGCGCC | 1 cut(s) | 3373 |
| PpsI | GAGTC | 4 cut(s) | 77, 224, 1342, 4671 |
| Ppu21I | YACGTR | 1 cut(s) | 4786 |
| PpuMI | RGGWCCY | 3 cut(s) | 2712, 2828, 5550 |
| PscI | ACATGT | 3 cut(s) | 669, 1975, 4442 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2157 |
| PshBI | ATTAAT | 1 cut(s) | 3960 |
| PsiI | TTATAA | 1 cut(s) | 5198 |
| Psp1406I | AACGTT | 1 cut(s) | 2310 |
| Psp5II | RGGWCCY | 3 cut(s) | 2712, 2828, 5550 |
| Psp6I | CCWGG | 8 cut(s) | 137, 652, 997, 1343, 2842, 3130, 4349, 5289 |
| PspFI | CCCAGC | 2 cut(s) | 519, 1039 |
| PspGI | CCWGG | 8 cut(s) | 137, 652, 997, 1343, 2842, 3130, 4349, 5289 |
| PspPI | GGNCC | 9 cut(s) | 160, 791, 2125, 2152, 2712, 2828, 2839, 2846, 5550 |
| PspPPI | RGGWCCY | 3 cut(s) | 2712, 2828, 5550 |
| PstI | CTGCAG | 2 cut(s) | 1064, 4999 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1469, 2849 |
| PsuI | RGATCY | 7 cut(s) | 409, 481, 535, 1016, 2464, 3415, 4312 |
| PsyI | GACNNNGTC | 1 cut(s) | 1294 |
| PteI | GCGCGC | 1 cut(s) | 4163 |
| PvuII | CAGCTG | 4 cut(s) | 1043, 1478, 1685, 1778 |
| RseI | CAYNNNNRTG | 5 cut(s) | 449, 1356, 1572, 3150, 4795 |
| SacII | CCGCGG | 1 cut(s) | 1102 |
| SapI | GCTCTTC | 2 cut(s) | 530, 818 |
| Sau96I | GGNCC | 9 cut(s) | 160, 791, 2125, 2152, 2712, 2828, 2839, 2846, 5550 |
| ScaI | AGTACT | 1 cut(s) | 476 |
| SchI | GAGTC | 4 cut(s) | 77, 225, 1342, 4672 |
| SduI | GDGCHC | 3 cut(s) | 206, 456, 3526 |
| SfcI | CTRYAG | 5 cut(s) | 1060, 2739, 2889, 3510, 4995 |
| SfoI | GGCGCC | 1 cut(s) | 3371 |
| Sfr303I | CCGCGG | 1 cut(s) | 1102 |
| SfuI | TTCGAA | 5 cut(s) | 501, 3059, 4733, 4841, 5449 |
| SgrAI | CRCCGGYG | 1 cut(s) | 863 |
| SgrBI | CCGCGG | 1 cut(s) | 1102 |
| SinI | GGWCC | 5 cut(s) | 160, 2152, 2712, 2828, 5550 |
| SmiI | ATTTAAAT | 1 cut(s) | 4371 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 449, 1356, 1572, 3150, 4795 |
| SmlI | CTYRAG | 4 cut(s) | 470, 5124, 5255, 5297 |
| SmoI | CTYRAG | 4 cut(s) | 470, 5124, 5255, 5297 |
| SpeI | ACTAGT | 1 cut(s) | 1456 |
| SphI | GCATGC | 1 cut(s) | 2768 |
| SseBI | AGGCCT | 1 cut(s) | 312 |
| SspDI | GGCGCC | 1 cut(s) | 3369 |
| SspI | AATATT | 1 cut(s) | 4222 |
| StuI | AGGCCT | 1 cut(s) | 312 |
| StyI | CCWWGG | 6 cut(s) | 104, 114, 1739, 2715, 3240, 4316 |
| SwaI | ATTTAAAT | 1 cut(s) | 4371 |
| TaqII | GACCGA | 1 cut(s) | 1838 |
| TatI | WGTACW | 1 cut(s) | 474 |
| TscAI | CASTG | 9 cut(s) | 961, 2162, 3360, 3945, 4545, 4749, 4914, 5004, 5289 |
| TseFI | GTSAC | 4 cut(s) | 1111, 1545, 4345, 4710 |
| Tsp45I | GTSAC | 4 cut(s) | 1111, 1545, 4345, 4710 |
| TspGWI | ACGGA | 5 cut(s) | 476, 499, 2083, 3395, 4203 |
| TspRI | CASTG | 9 cut(s) | 961, 2162, 3360, 3945, 4545, 4749, 4914, 5004, 5289 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1294 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 406, 2134 |
| Vha464I | CTTAAG | 1 cut(s) | 5255 |
| VpaK11BI | GGWCC | 5 cut(s) | 160, 2152, 2712, 2828, 5550 |
| VspI | ATTAAT | 1 cut(s) | 3960 |
| XapI | RAATTY | 8 cut(s) | 92, 1158, 2564, 2751, 3852, 4081, 5423, 5621 |
| XbaI | TCTAGA | 1 cut(s) | 4574 |
| XceI | RCATGY | 4 cut(s) | 673, 1979, 2768, 4446 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1644 |
| XmiI | GTMKAC | 2 cut(s) | 2888, 3208 |
| XmnI | GAANNNNTTC | 4 cut(s) | 2296, 2752, 3174, 4461 |
| ZraI | GACGTC | 1 cut(s) | 844 |
| ZrmI | AGTACT | 1 cut(s) | 476 |
| Zsp2I | ATGCAT | 1 cut(s) | 5155 |