ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 4 - 88 | 5.8e-11 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 14 |
| AciI | CCGC | 1 cut(s) | 29 |
| AclWI | GGATC | 3 cut(s) | 150, 163, 320 |
| AcsI | RAATTY | 1 cut(s) | 216 |
| AcuI | CTGAAG | 2 cut(s) | 60, 203 |
| AfeI | AGCGCT | 1 cut(s) | 45 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 14 |
| AgsI | TTSAA | 4 cut(s) | 107, 127, 167, 197 |
| AluBI | AGCT | 3 cut(s) | 50, 97, 191 |
| AluI | AGCT | 3 cut(s) | 50, 97, 191 |
| AlwI | GGATC | 3 cut(s) | 150, 163, 320 |
| Aor51HI | AGCGCT | 1 cut(s) | 45 |
| AoxI | GGCC | 1 cut(s) | 301 |
| ApeKI | GCWGC | 2 cut(s) | 116, 239 |
| ApoI | RAATTY | 1 cut(s) | 216 |
| AspLEI | GCGC | 1 cut(s) | 46 |
| AspS9I | GGNCC | 1 cut(s) | 302 |
| AsuNHI | GCTAGC | 1 cut(s) | 46 |
| BamHI | GGATCC | 1 cut(s) | 155 |
| BbvI | GCAGC | 2 cut(s) | 128, 251 |
| BfaI | CTAG | 2 cut(s) | 47, 342 |
| BfoI | RGCGCY | 1 cut(s) | 47 |
| BisI | GCNGC | 2 cut(s) | 117, 240 |
| BlsI | GCNGC | 2 cut(s) | 118, 241 |
| BmgT120I | GGNCC | 1 cut(s) | 302 |
| BmiI | GGNNCC | 1 cut(s) | 157 |
| BmsI | GCATC | 2 cut(s) | 13, 103 |
| BmtI | GCTAGC | 1 cut(s) | 50 |
| BpmI | CTGGAG | 1 cut(s) | 119 |
| BsaJI | CCNNGG | 1 cut(s) | 308 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 14 |
| BseDI | CCNNGG | 1 cut(s) | 308 |
| BseGI | GGATG | 1 cut(s) | 4 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 14 |
| BseMII | CTCAG | 1 cut(s) | 157 |
| BseXI | GCAGC | 2 cut(s) | 128, 251 |
| BsgI | GTGCAG | 1 cut(s) | 258 |
| BshFI | GGCC | 1 cut(s) | 303 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 14 |
| BsnI | GGCC | 1 cut(s) | 303 |
| Bsp143I | GATC | 3 cut(s) | 139, 155, 312 |
| Bsp19I | CCATGG | 1 cut(s) | 308 |
| BspACI | CCGC | 1 cut(s) | 29 |
| BspANI | GGCC | 1 cut(s) | 303 |
| BspCNI | CTCAG | 1 cut(s) | 156 |
| BspLI | GGNNCC | 1 cut(s) | 157 |
| BspOI | GCTAGC | 1 cut(s) | 50 |
| BspPI | GGATC | 3 cut(s) | 150, 163, 320 |
| BssECI | CCNNGG | 1 cut(s) | 308 |
| BssMI | GATC | 3 cut(s) | 139, 155, 312 |
| BssT1I | CCWWGG | 1 cut(s) | 308 |
| Bst6I | CTCTTC | 1 cut(s) | 327 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 269 |
| BstC8I | GCNNGC | 3 cut(s) | 33, 48, 189 |
| BstDEI | CTNAG | 1 cut(s) | 143 |
| BstDSI | CCRYGG | 1 cut(s) | 308 |
| BstF5I | GGATG | 1 cut(s) | 4 |
| BstH2I | RGCGCY | 1 cut(s) | 47 |
| BstHHI | GCGC | 1 cut(s) | 46 |
| BstKTI | GATC | 3 cut(s) | 142, 158, 315 |
| BstMBI | GATC | 3 cut(s) | 139, 155, 312 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 41, 260, 269 |
| BstNSI | RCATGY | 1 cut(s) | 35 |
| BstV1I | GCAGC | 2 cut(s) | 128, 251 |
| BstX2I | RGATCY | 1 cut(s) | 155 |
| BstYI | RGATCY | 1 cut(s) | 155 |
| BsuRI | GGCC | 1 cut(s) | 303 |
| BtgI | CCRYGG | 1 cut(s) | 308 |
| BtsCI | GGATG | 1 cut(s) | 4 |
| BtsIMutI | CAGTG | 1 cut(s) | 19 |
| Cac8I | GCNNGC | 3 cut(s) | 33, 48, 189 |
| CfoI | GCGC | 1 cut(s) | 46 |
| Cfr13I | GGNCC | 1 cut(s) | 302 |
| CviAII | CATG | 2 cut(s) | 32, 309 |
| CviJI | RGCY | 6 cut(s) | 50, 87, 97, 191, 242, 303 |
| CviKI_1 | RGCY | 6 cut(s) | 50, 87, 97, 191, 242, 303 |
| DdeI | CTNAG | 1 cut(s) | 143 |
| DpnI | GATC | 3 cut(s) | 141, 157, 314 |
| DpnII | GATC | 3 cut(s) | 139, 155, 312 |
| Eam1104I | CTCTTC | 1 cut(s) | 327 |
| EarI | CTCTTC | 1 cut(s) | 327 |
| Eco130I | CCWWGG | 1 cut(s) | 308 |
| Eco47III | AGCGCT | 1 cut(s) | 45 |
| Eco57I | CTGAAG | 2 cut(s) | 60, 203 |
| EcoT14I | CCWWGG | 1 cut(s) | 308 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 308 |
| FaeI | CATG | 2 cut(s) | 35, 312 |
| FaiI | YATR | 6 cut(s) | 33, 58, 60, 65, 149, 310 |
| FatI | CATG | 2 cut(s) | 31, 308 |
| Fnu4HI | GCNGC | 2 cut(s) | 117, 240 |
| Fsp4HI | GCNGC | 2 cut(s) | 117, 240 |
| FspBI | CTAG | 2 cut(s) | 47, 342 |
| GlaI | GCGC | 1 cut(s) | 45 |
| GluI | GCNGC | 2 cut(s) | 117, 240 |
| GsuI | CTGGAG | 1 cut(s) | 119 |
| HaeII | RGCGCY | 1 cut(s) | 47 |
| HaeIII | GGCC | 1 cut(s) | 303 |
| HhaI | GCGC | 1 cut(s) | 46 |
| Hin1II | CATG | 2 cut(s) | 35, 312 |
| Hin6I | GCGC | 1 cut(s) | 44 |
| HinP1I | GCGC | 1 cut(s) | 44 |
| HindIII | AAGCTT | 1 cut(s) | 189 |
| HinfI | GANTC | 1 cut(s) | 19 |
| Hpy188I | TCNGA | 1 cut(s) | 258 |
| Hpy188III | TCNNGA | 2 cut(s) | 131, 181 |
| HpyAV | CCTTC | 1 cut(s) | 146 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 116, 231, 239 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 41, 260, 269 |
| HpyF3I | CTNAG | 1 cut(s) | 143 |
| Hsp92II | CATG | 2 cut(s) | 35, 312 |
| HspAI | GCGC | 1 cut(s) | 44 |
| Kzo9I | GATC | 3 cut(s) | 139, 155, 312 |
| LpnPI | CCDG | 3 cut(s) | 83, 194, 235 |
| Lsp1109I | GCAGC | 2 cut(s) | 128, 251 |
| LweI | GCATC | 2 cut(s) | 13, 103 |
| MaeI | CTAG | 2 cut(s) | 47, 342 |
| MalI | GATC | 3 cut(s) | 141, 157, 314 |
| MboI | GATC | 3 cut(s) | 139, 155, 312 |
| MboII | GAAGA | 3 cut(s) | 179, 209, 344 |
| MflI | RGATCY | 1 cut(s) | 155 |
| MluCI | AATT | 3 cut(s) | 120, 205, 216 |
| MnlI | CCTC | 3 cut(s) | 127, 204, 315 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 3 cut(s) | 90, 204, 346 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 41, 260, 269 |
| NcoI | CCATGG | 1 cut(s) | 308 |
| NdeII | GATC | 3 cut(s) | 139, 155, 312 |
| NheI | GCTAGC | 1 cut(s) | 46 |
| NlaIII | CATG | 2 cut(s) | 35, 312 |
| NlaIV | GGNNCC | 1 cut(s) | 157 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 35 |
| PaeI | GCATGC | 1 cut(s) | 35 |
| PfeI | GAWTC | 1 cut(s) | 19 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 14 |
| PkrI | GCNGC | 2 cut(s) | 118, 241 |
| PspN4I | GGNNCC | 1 cut(s) | 157 |
| PspPI | GGNCC | 1 cut(s) | 302 |
| PsuI | RGATCY | 1 cut(s) | 155 |
| SaqAI | TTAA | 3 cut(s) | 90, 204, 346 |
| SatI | GCNGC | 2 cut(s) | 117, 240 |
| Sau3AI | GATC | 3 cut(s) | 139, 155, 312 |
| Sau96I | GGNCC | 1 cut(s) | 302 |
| SetI | ASST | 5 cut(s) | 52, 99, 138, 193, 287 |
| SfaNI | GCATC | 2 cut(s) | 13, 103 |
| SphI | GCATGC | 1 cut(s) | 35 |
| Sse9I | AATT | 3 cut(s) | 120, 205, 216 |
| SsiI | CCGC | 1 cut(s) | 29 |
| SspMI | CTAG | 2 cut(s) | 47, 342 |
| StyI | CCWWGG | 1 cut(s) | 308 |
| TasI | AATT | 3 cut(s) | 120, 205, 216 |
| TfiI | GAWTC | 1 cut(s) | 19 |
| Tru1I | TTAA | 3 cut(s) | 90, 204, 346 |
| Tru9I | TTAA | 3 cut(s) | 90, 204, 346 |
| TscAI | CASTG | 1 cut(s) | 19 |
| TseI | GCWGC | 2 cut(s) | 116, 239 |
| TspDTI | ATGAA | 1 cut(s) | 80 |
| TspGWI | ACGGA | 1 cut(s) | 148 |
| TspRI | CASTG | 1 cut(s) | 19 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 14 |
| XapI | RAATTY | 1 cut(s) | 216 |
| XceI | RCATGY | 1 cut(s) | 35 |
| XspI | CTAG | 2 cut(s) | 47, 342 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |