ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 74 - 192 | 5.8e-14 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 170 |
| AccB1I | GGYRCC | 1 cut(s) | 290 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 278 |
| AciI | CCGC | 1 cut(s) | 85 |
| AcsI | RAATTY | 1 cut(s) | 503 |
| AcuI | CTGAAG | 3 cut(s) | 83, 439, 614 |
| AfaI | GTAC | 2 cut(s) | 303, 660 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 143, 278 |
| AgsI | TTSAA | 2 cut(s) | 268, 544 |
| AluBI | AGCT | 4 cut(s) | 113, 257, 379, 566 |
| AluI | AGCT | 4 cut(s) | 113, 257, 379, 566 |
| Alw21I | GWGCWC | 1 cut(s) | 128 |
| AoxI | GGCC | 2 cut(s) | 280, 614 |
| ApoI | RAATTY | 1 cut(s) | 503 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 539 |
| AspLEI | GCGC | 1 cut(s) | 171 |
| AspS9I | GGNCC | 1 cut(s) | 614 |
| AsuHPI | GGTGA | 1 cut(s) | 419 |
| BanI | GGYRCC | 1 cut(s) | 290 |
| BauI | CACGAG | 1 cut(s) | 441 |
| Bbv12I | GWGCWC | 1 cut(s) | 128 |
| BfaI | CTAG | 4 cut(s) | 195, 287, 563, 567 |
| BfmI | CTRYAG | 1 cut(s) | 642 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 622 |
| BmgT120I | GGNCC | 1 cut(s) | 614 |
| BmiI | GGNNCC | 2 cut(s) | 292, 626 |
| BmrI | ACTGGG | 1 cut(s) | 671 |
| BmsI | GCATC | 2 cut(s) | 400, 469 |
| BmuI | ACTGGG | 1 cut(s) | 671 |
| BsaJI | CCNNGG | 1 cut(s) | 333 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 246, 276 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 143, 278 |
| Bse1I | ACTGG | 2 cut(s) | 148, 666 |
| BseDI | CCNNGG | 1 cut(s) | 333 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 143, 278 |
| BseMII | CTCAG | 2 cut(s) | 128, 134 |
| BseNI | ACTGG | 2 cut(s) | 148, 666 |
| BseYI | CCCAGC | 2 cut(s) | 379, 447 |
| BshFI | GGCC | 2 cut(s) | 282, 616 |
| BshNI | GGYRCC | 1 cut(s) | 290 |
| BsiHKAI | GWGCWC | 1 cut(s) | 128 |
| BslFI | GGGAC | 1 cut(s) | 464 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 143, 278 |
| BsmFI | GGGAC | 1 cut(s) | 464 |
| BsnI | GGCC | 2 cut(s) | 282, 616 |
| Bsp1286I | GDGCHC | 1 cut(s) | 128 |
| BspACI | CCGC | 1 cut(s) | 85 |
| BspANI | GGCC | 2 cut(s) | 282, 616 |
| BspCNI | CTCAG | 2 cut(s) | 127, 133 |
| BspLI | GGNNCC | 2 cut(s) | 292, 626 |
| BspT107I | GGYRCC | 1 cut(s) | 290 |
| BsrI | ACTGG | 2 cut(s) | 148, 666 |
| BssECI | CCNNGG | 1 cut(s) | 333 |
| BssSI | CACGAG | 1 cut(s) | 441 |
| Bst2BI | CACGAG | 1 cut(s) | 441 |
| Bst6I | CTCTTC | 1 cut(s) | 17 |
| BstDEI | CTNAG | 2 cut(s) | 114, 120 |
| BstDSI | CCRYGG | 1 cut(s) | 333 |
| BstHHI | GCGC | 1 cut(s) | 171 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 338, 572, 622 |
| BstNSI | RCATGY | 1 cut(s) | 530 |
| BstSFI | CTRYAG | 1 cut(s) | 642 |
| BsuRI | GGCC | 2 cut(s) | 282, 616 |
| BtgI | CCRYGG | 1 cut(s) | 333 |
| BtsI | GCAGTG | 1 cut(s) | 489 |
| BtsIMutI | CAGTG | 1 cut(s) | 489 |
| CfoI | GCGC | 1 cut(s) | 171 |
| Cfr13I | GGNCC | 1 cut(s) | 614 |
| Csp6I | GTAC | 2 cut(s) | 302, 659 |
| CviAII | CATG | 4 cut(s) | 47, 278, 527, 557 |
| CviQI | GTAC | 2 cut(s) | 302, 659 |
| DdeI | CTNAG | 2 cut(s) | 114, 120 |
| Eam1104I | CTCTTC | 1 cut(s) | 17 |
| EarI | CTCTTC | 1 cut(s) | 17 |
| Eco57I | CTGAAG | 3 cut(s) | 83, 439, 614 |
| EcoO109I | RGGNCCY | 1 cut(s) | 614 |
| FaeI | CATG | 4 cut(s) | 50, 281, 530, 560 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 524, 556 |
| FaqI | GGGAC | 1 cut(s) | 464 |
| FatI | CATG | 4 cut(s) | 46, 277, 526, 556 |
| FspAI | RTGCGCAY | 1 cut(s) | 170 |
| FspBI | CTAG | 4 cut(s) | 195, 287, 563, 567 |
| FspI | TGCGCA | 1 cut(s) | 170 |
| GlaI | GCGC | 1 cut(s) | 170 |
| GsaI | CCCAGC | 2 cut(s) | 383, 451 |
| HaeIII | GGCC | 2 cut(s) | 282, 616 |
| HhaI | GCGC | 1 cut(s) | 171 |
| Hin1II | CATG | 4 cut(s) | 50, 281, 530, 560 |
| Hin6I | GCGC | 1 cut(s) | 169 |
| HinP1I | GCGC | 1 cut(s) | 169 |
| HincII | GTYRAC | 1 cut(s) | 492 |
| HindII | GTYRAC | 1 cut(s) | 492 |
| HinfI | GANTC | 2 cut(s) | 27, 118 |
| HphI | GGTGA | 1 cut(s) | 419 |
| Hpy166II | GTNNAC | 1 cut(s) | 492 |
| Hpy188I | TCNGA | 4 cut(s) | 63, 106, 117, 123 |
| Hpy188III | TCNNGA | 2 cut(s) | 31, 476 |
| Hpy8I | GTNNAC | 1 cut(s) | 492 |
| HpyAV | CCTTC | 5 cut(s) | 234, 293, 564, 584, 638 |
| HpyCH4V | TGCA | 4 cut(s) | 90, 482, 548, 603 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 338, 572, 622 |
| HpyF3I | CTNAG | 2 cut(s) | 114, 120 |
| Hsp92II | CATG | 4 cut(s) | 50, 281, 530, 560 |
| HspAI | GCGC | 1 cut(s) | 169 |
| LmnI | GCTCC | 2 cut(s) | 254, 630 |
| LpnPI | CCDG | 9 cut(s) | 81, 95, 129, 164, 285, 365, 433, 630, 647 |
| LweI | GCATC | 2 cut(s) | 400, 469 |
| MaeI | CTAG | 4 cut(s) | 195, 287, 563, 567 |
| MboII | GAAGA | 4 cut(s) | 28, 31, 34, 544 |
| MhlI | GDGCHC | 1 cut(s) | 128 |
| MluCI | AATT | 4 cut(s) | 107, 360, 503, 636 |
| MlyI | GAGTC | 2 cut(s) | 36, 112 |
| MnlI | CCTC | 5 cut(s) | 49, 398, 461, 480, 516 |
| MroXI | GAANNNNTTC | 1 cut(s) | 539 |
| MseI | TTAA | 6 cut(s) | 233, 389, 417, 426, 434, 635 |
| MspA1I | CMGCKG | 1 cut(s) | 85 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 338, 572, 622 |
| NlaIII | CATG | 4 cut(s) | 50, 281, 530, 560 |
| NlaIV | GGNNCC | 2 cut(s) | 292, 626 |
| NsbI | TGCGCA | 1 cut(s) | 170 |
| NspI | RCATGY | 1 cut(s) | 530 |
| PdmI | GAANNNNTTC | 1 cut(s) | 539 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 278 |
| PleI | GAGTC | 2 cut(s) | 35, 112 |
| PpsI | GAGTC | 2 cut(s) | 35, 112 |
| PspFI | CCCAGC | 2 cut(s) | 379, 447 |
| PspN4I | GGNNCC | 2 cut(s) | 292, 626 |
| PspPI | GGNCC | 1 cut(s) | 614 |
| PsrI | GAACNNNNNNTAC | 1 cut(s) | 651 |
| RsaI | GTAC | 2 cut(s) | 303, 660 |
| RsaNI | GTAC | 2 cut(s) | 302, 659 |
| SaqAI | TTAA | 6 cut(s) | 233, 389, 417, 426, 434, 635 |
| Sau96I | GGNCC | 1 cut(s) | 614 |
| SchI | GAGTC | 2 cut(s) | 36, 112 |
| SduI | GDGCHC | 1 cut(s) | 128 |
| SetI | ASST | 9 cut(s) | 115, 183, 259, 292, 381, 409, 491, 568, 595 |
| SfaNI | GCATC | 2 cut(s) | 400, 469 |
| SfcI | CTRYAG | 1 cut(s) | 642 |
| Sse9I | AATT | 4 cut(s) | 107, 360, 503, 636 |
| SsiI | CCGC | 1 cut(s) | 85 |
| SspMI | CTAG | 4 cut(s) | 195, 287, 563, 567 |
| TaqI | TCGA | 1 cut(s) | 30 |
| TasI | AATT | 4 cut(s) | 107, 360, 503, 636 |
| TatI | WGTACW | 1 cut(s) | 658 |
| Tru1I | TTAA | 6 cut(s) | 233, 389, 417, 426, 434, 635 |
| Tru9I | TTAA | 6 cut(s) | 233, 389, 417, 426, 434, 635 |
| TscAI | CASTG | 1 cut(s) | 489 |
| TspDTI | ATGAA | 1 cut(s) | 573 |
| TspGWI | ACGGA | 1 cut(s) | 350 |
| TspRI | CASTG | 1 cut(s) | 489 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 278 |
| XapI | RAATTY | 1 cut(s) | 503 |
| XceI | RCATGY | 1 cut(s) | 530 |
| XmnI | GAANNNNTTC | 1 cut(s) | 539 |
| XspI | CTAG | 4 cut(s) | 195, 287, 563, 567 |