Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 269 |
| AciI | CCGC | 2 cut(s) | 205, 269 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcyI | GRCGYC | 3 cut(s) | 368, 413, 486 |
| AgsI | TTSAA | 5 cut(s) | 23, 77, 154, 179, 450 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 129 |
| AluBI | AGCT | 5 cut(s) | 52, 80, 230, 284, 296 |
| AluI | AGCT | 5 cut(s) | 52, 80, 230, 284, 296 |
| Alw21I | GWGCWC | 2 cut(s) | 232, 482 |
| Alw26I | GTCTC | 3 cut(s) | 22, 116, 469 |
| Ama87I | CYCGRG | 1 cut(s) | 466 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 1 cut(s) | 44 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 18 |
| AspLEI | GCGC | 2 cut(s) | 269, 497 |
| AsuHPI | GGTGA | 3 cut(s) | 23, 320, 359 |
| AvaI | CYCGRG | 1 cut(s) | 466 |
| BanII | GRGCYC | 1 cut(s) | 232 |
| Bbv12I | GWGCWC | 2 cut(s) | 232, 482 |
| BbvI | GCAGC | 1 cut(s) | 31 |
| BccI | CCATC | 2 cut(s) | 344, 498 |
| BcoDI | GTCTC | 3 cut(s) | 22, 116, 469 |
| BfaI | CTAG | 1 cut(s) | 111 |
| BfmI | CTRYAG | 1 cut(s) | 279 |
| BisI | GCNGC | 2 cut(s) | 45, 270 |
| BlpI | GCTNAGC | 1 cut(s) | 48 |
| BlsI | GCNGC | 2 cut(s) | 46, 271 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 129 |
| BmeT110I | CYCGRG | 1 cut(s) | 466 |
| BmiI | GGNNCC | 1 cut(s) | 108 |
| BoxI | GACNNNNGTC | 1 cut(s) | 326 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 280, 312 |
| BpmI | CTGGAG | 2 cut(s) | 155, 428 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 48 |
| BpuEI | CTTGAG | 1 cut(s) | 443 |
| BsaHI | GRCGYC | 3 cut(s) | 368, 413, 486 |
| BsaI | GGTCTC | 1 cut(s) | 469 |
| BsaJI | CCNNGG | 1 cut(s) | 6 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 86, 116, 177, 207, 401, 431 |
| BseDI | CCNNGG | 1 cut(s) | 6 |
| BseGI | GGATG | 1 cut(s) | 213 |
| BseMII | CTCAG | 3 cut(s) | 39, 245, 266 |
| BseXI | GCAGC | 1 cut(s) | 31 |
| Bsh1236I | CGCG | 1 cut(s) | 269 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsiHKAI | GWGCWC | 2 cut(s) | 232, 482 |
| BsiHKCI | CYCGRG | 1 cut(s) | 466 |
| BsiSI | CCGG | 1 cut(s) | 483 |
| BsmAI | GTCTC | 3 cut(s) | 22, 116, 469 |
| BsmBI | CGTCTC | 1 cut(s) | 116 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bso31I | GGTCTC | 1 cut(s) | 469 |
| BsoBI | CYCGRG | 1 cut(s) | 466 |
| Bsp1286I | GDGCHC | 2 cut(s) | 232, 482 |
| Bsp143I | GATC | 2 cut(s) | 310, 380 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 48 |
| BspACI | CCGC | 2 cut(s) | 205, 269 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 3 cut(s) | 40, 244, 265 |
| BspFNI | CGCG | 1 cut(s) | 269 |
| BspLI | GGNNCC | 1 cut(s) | 108 |
| BspTNI | GGTCTC | 1 cut(s) | 469 |
| BssECI | CCNNGG | 1 cut(s) | 6 |
| BssMI | GATC | 2 cut(s) | 310, 380 |
| BssNI | GRCGYC | 3 cut(s) | 368, 413, 486 |
| Bst4CI | ACNGT | 1 cut(s) | 131 |
| Bst6I | CTCTTC | 1 cut(s) | 174 |
| BstACI | GRCGYC | 3 cut(s) | 368, 413, 486 |
| BstDEI | CTNAG | 3 cut(s) | 48, 231, 252 |
| BstDSI | CCRYGG | 1 cut(s) | 6 |
| BstF5I | GGATG | 1 cut(s) | 213 |
| BstFNI | CGCG | 1 cut(s) | 269 |
| BstHHI | GCGC | 2 cut(s) | 269, 497 |
| BstKTI | GATC | 2 cut(s) | 313, 383 |
| BstMAI | GTCTC | 3 cut(s) | 22, 116, 469 |
| BstMBI | GATC | 2 cut(s) | 310, 380 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 58, 266, 275, 397, 419, 492 |
| BstNSI | RCATGY | 1 cut(s) | 278 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 326 |
| BstSFI | CTRYAG | 1 cut(s) | 279 |
| BstUI | CGCG | 1 cut(s) | 269 |
| BstV1I | GCAGC | 1 cut(s) | 31 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtgI | CCRYGG | 1 cut(s) | 6 |
| BtgZI | GCGATG | 1 cut(s) | 517 |
| BtsCI | GGATG | 1 cut(s) | 213 |
| BtsIMutI | CAGTG | 1 cut(s) | 390 |
| CfoI | GCGC | 2 cut(s) | 269, 497 |
| CseI | GACGC | 3 cut(s) | 357, 402, 475 |
| CviAII | CATG | 1 cut(s) | 275 |
| DdeI | CTNAG | 3 cut(s) | 48, 231, 252 |
| DpnI | GATC | 2 cut(s) | 312, 382 |
| DpnII | GATC | 2 cut(s) | 310, 380 |
| DriI | GACNNNNNGTC | 1 cut(s) | 129 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 174 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 129 |
| EarI | CTCTTC | 1 cut(s) | 174 |
| Ecl136II | GAGCTC | 1 cut(s) | 230 |
| Eco24I | GRGCYC | 1 cut(s) | 232 |
| Eco31I | GGTCTC | 1 cut(s) | 469 |
| Eco53kI | GAGCTC | 1 cut(s) | 230 |
| Eco88I | CYCGRG | 1 cut(s) | 466 |
| EcoICRI | GAGCTC | 1 cut(s) | 230 |
| EcoT38I | GRGCYC | 1 cut(s) | 232 |
| Esp3I | CGTCTC | 1 cut(s) | 116 |
| FaeI | CATG | 1 cut(s) | 278 |
| FaiI | YATR | 6 cut(s) | 83, 246, 248, 276, 335, 345 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 15, 47 |
| FatI | CATG | 1 cut(s) | 274 |
| Fnu4HI | GCNGC | 2 cut(s) | 45, 270 |
| FokI | GGATG | 1 cut(s) | 220 |
| FriOI | GRGCYC | 1 cut(s) | 232 |
| Fsp4HI | GCNGC | 2 cut(s) | 45, 270 |
| FspBI | CTAG | 1 cut(s) | 111 |
| GlaI | GCGC | 2 cut(s) | 268, 496 |
| GluI | GCNGC | 2 cut(s) | 45, 270 |
| GsuI | CTGGAG | 2 cut(s) | 155, 428 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HapII | CCGG | 1 cut(s) | 483 |
| HgaI | GACGC | 3 cut(s) | 357, 402, 475 |
| HhaI | GCGC | 2 cut(s) | 269, 497 |
| Hin1I | GRCGYC | 3 cut(s) | 368, 413, 486 |
| Hin1II | CATG | 1 cut(s) | 278 |
| Hin6I | GCGC | 2 cut(s) | 267, 495 |
| HinP1I | GCGC | 2 cut(s) | 267, 495 |
| HinfI | GANTC | 1 cut(s) | 436 |
| HpaII | CCGG | 1 cut(s) | 483 |
| HphI | GGTGA | 3 cut(s) | 23, 320, 359 |
| Hpy166II | GTNNAC | 1 cut(s) | 14 |
| Hpy188I | TCNGA | 4 cut(s) | 234, 255, 373, 517 |
| Hpy188III | TCNNGA | 3 cut(s) | 134, 407, 466 |
| Hpy8I | GTNNAC | 1 cut(s) | 14 |
| Hpy99I | CGWCG | 4 cut(s) | 332, 418, 421, 491 |
| HpyAV | CCTTC | 1 cut(s) | 368 |
| HpyCH4III | ACNGT | 1 cut(s) | 131 |
| HpyCH4IV | ACGT | 1 cut(s) | 16 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 58, 266, 275, 397, 419, 492 |
| HpyF3I | CTNAG | 3 cut(s) | 48, 231, 252 |
| HpySE526I | ACGT | 1 cut(s) | 16 |
| Hsp92I | GRCGYC | 3 cut(s) | 368, 413, 486 |
| Hsp92II | CATG | 1 cut(s) | 278 |
| HspAI | GCGC | 2 cut(s) | 267, 495 |
| Kzo9I | GATC | 2 cut(s) | 310, 380 |
| LmnI | GCTCC | 5 cut(s) | 94, 106, 227, 397, 485 |
| LpnPI | CCDG | 5 cut(s) | 119, 392, 425, 460, 496 |
| Lsp1109I | GCAGC | 1 cut(s) | 31 |
| MaeI | CTAG | 1 cut(s) | 111 |
| MaeII | ACGT | 1 cut(s) | 16 |
| MalI | GATC | 2 cut(s) | 312, 382 |
| MboI | GATC | 2 cut(s) | 310, 380 |
| MboII | GAAGA | 1 cut(s) | 191 |
| MhlI | GDGCHC | 2 cut(s) | 232, 482 |
| MlyI | GAGTC | 1 cut(s) | 445 |
| MmeI | TCCRAC | 2 cut(s) | 205, 375 |
| MnlI | CCTC | 9 cut(s) | 130, 175, 249, 261, 298, 381, 395, 403, 462 |
| MroXI | GAANNNNTTC | 1 cut(s) | 18 |
| MspI | CCGG | 1 cut(s) | 483 |
| MvnI | CGCG | 1 cut(s) | 269 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 58, 266, 275, 397, 419, 492 |
| NdeII | GATC | 2 cut(s) | 310, 380 |
| NlaIII | CATG | 1 cut(s) | 278 |
| NlaIV | GGNNCC | 1 cut(s) | 108 |
| NspI | RCATGY | 1 cut(s) | 278 |
| PaeR7I | CTCGAG | 1 cut(s) | 466 |
| PdmI | GAANNNNTTC | 1 cut(s) | 18 |
| PkrI | GCNGC | 2 cut(s) | 46, 271 |
| PleI | GAGTC | 1 cut(s) | 444 |
| PpsI | GAGTC | 1 cut(s) | 444 |
| PshAI | GACNNNNGTC | 1 cut(s) | 326 |
| Psp124BI | GAGCTC | 1 cut(s) | 232 |
| PspN4I | GGNNCC | 1 cut(s) | 108 |
| SacI | GAGCTC | 1 cut(s) | 232 |
| SatI | GCNGC | 2 cut(s) | 45, 270 |
| Sau3AI | GATC | 2 cut(s) | 310, 380 |
| SchI | GAGTC | 1 cut(s) | 445 |
| SduI | GDGCHC | 2 cut(s) | 232, 482 |
| SfcI | CTRYAG | 1 cut(s) | 279 |
| Sfr274I | CTCGAG | 1 cut(s) | 466 |
| SlaI | CTCGAG | 1 cut(s) | 466 |
| SmlI | CTYRAG | 2 cut(s) | 458, 466 |
| SmoI | CTYRAG | 2 cut(s) | 458, 466 |
| SsiI | CCGC | 2 cut(s) | 205, 269 |
| SspMI | CTAG | 1 cut(s) | 111 |
| SstI | GAGCTC | 1 cut(s) | 232 |
| TaaI | ACNGT | 1 cut(s) | 131 |
| TaiI | ACGT | 1 cut(s) | 19 |
| TaqI | TCGA | 4 cut(s) | 34, 298, 320, 467 |
| TauI | GCSGC | 1 cut(s) | 272 |
| TscAI | CASTG | 1 cut(s) | 390 |
| TseI | GCWGC | 1 cut(s) | 44 |
| TspRI | CASTG | 1 cut(s) | 390 |
| XceI | RCATGY | 1 cut(s) | 278 |
| XhoI | CTCGAG | 1 cut(s) | 466 |
| XmnI | GAANNNNTTC | 1 cut(s) | 18 |
| XspI | CTAG | 1 cut(s) | 111 |