Rorug06G0063000

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000072
Physical Location & Seq
Forward (+)
8370846 .. 8372782
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0063000.1

Sequence Viewer

Length: 672 bp
ATGAGTCGCAATGCCTTGTTCTTCCTAGGCTTCCTTTGCATTGCGGTCGCCGGAGTCGGAGGCCAATCTCCCGCTACCTCACCCACTGCCACACCAGCTCCTCCAACCCCCACTACTCCACCACCGGTCACCTCATCCCCACCCCCAGCTGCCGCCTCACCTCCCCCAGCTGCTGCCTCACCACCACCAGTGACCGCATCACCACCACCAGCCACTCCTCCTCCAGTCAGCGCACCCCCGCCGGCCACTCCACCTCCGGCCACCCCACCACCAGTCAGCGCTCCCCCTCCGGCCACTCCACCACCCGCAACTCCTCCTCCGGCTACTCCACCACCGGCCACTCCTCCCCCGGCAACTCCACCACCGGCCACCCCACCTCCGGCAACTCCTCCTCCGGCCACTCCACCTCCAGCTCCTCTTGCATCGCCCCCAGCTCTTGTCCCAGCTCCATCTCCCAAGGTGAAATCTCCGGCTTTGGCTCCAACTCCTGCAGCTCTTTCGCCGGGCCCACCAGCGCCTCCTGTCGGAGCTCCTGGTCCCAGCAGCATCGAGGCATCCTCTCCGGGCCCGTCTCAGTCGTCTGATCAGAGTGGAGTAGAGAAGATGTGGACAATGCAGAAGATGGTTGGGAGCTTGTTGTTCGGATGGGCTCTTCTCAGCTTGATGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

223

Amino Acids

21.31

Weight (kDa)

9.1

Isoelectric Point (pI)

114.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 44, 72, 153, 195, 239, 306
AcoI YGGCCR 6 cut(s) 243, 258, 291, 336, 366, 396
AfeI AGCGCT 1 cut(s) 280
AfiI CCNNNNNNNGG 2 cut(s) 379, 524
AgeI ACCGGT 1 cut(s) 124
AjnI CCWGG 1 cut(s) 532
Alw21I GWGCWC 1 cut(s) 532
Alw26I GTCTC 1 cut(s) 576
AlwNI CAGNNNCTG 1 cut(s) 173
Aor51HI AGCGCT 1 cut(s) 280
AoxI GGCC 9 cut(s) 61, 243, 258, 291, 336, 366, 396, 505, 565
ApaI GGGCCC 2 cut(s) 509, 569
ApeKI GCWGC 5 cut(s) 149, 170, 173, 491, 543
AsiGI ACCGGT 1 cut(s) 124
AspA2I CCTAGG 1 cut(s) 25
AspLEI GCGC 3 cut(s) 233, 281, 517
AspS9I GGNCC 5 cut(s) 505, 506, 536, 565, 566
AsuC2I CCSGG 3 cut(s) 350, 504, 564
AsuHPI GGTGA 6 cut(s) 72, 121, 150, 171, 192, 472
AvaII GGWCC 1 cut(s) 536
AvrII CCTAGG 1 cut(s) 25
BaeGI GKGCMC 2 cut(s) 509, 569
BanII GRGCYC 4 cut(s) 509, 532, 569, 652
Bbv12I GWGCWC 1 cut(s) 532
BbvI GCAGC 5 cut(s) 136, 157, 160, 503, 555
BccI CCATC 3 cut(s) 457, 616, 639
BcgI CGANNNNNNTGC 4 cut(s) 28, 62, 480, 514
BciT130I CCWGG 1 cut(s) 534
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 3 cut(s) 350, 504, 564
BcoDI GTCTC 1 cut(s) 576
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 489
BfoI RGCGCY 2 cut(s) 282, 518
BisI GCNGC 6 cut(s) 150, 153, 171, 174, 492, 544
BlnI CCTAGG 1 cut(s) 25
BlsI GCNGC 6 cut(s) 151, 154, 172, 175, 493, 545
Bme1390I CCNGG 4 cut(s) 350, 504, 534, 564
Bme18I GGWCC 1 cut(s) 536
BmgT120I GGNCC 5 cut(s) 505, 506, 536, 565, 566
BmiI GGNNCC 4 cut(s) 480, 507, 538, 567
BmrFI CCNGG 4 cut(s) 350, 504, 534, 564
BmsI GCATC 5 cut(s) 206, 431, 555, 563, 654
BplI GAGNNNNNCTC 2 cut(s) 542, 574
BpmI CTGGAG 2 cut(s) 207, 393
BpuMI CCSGG 3 cut(s) 350, 504, 564
BsaJI CCNNGG 3 cut(s) 25, 348, 456
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 524
Bse118I RCCGGY 4 cut(s) 124, 241, 334, 364
Bse1I ACTGG 3 cut(s) 188, 224, 272
Bse3DI GCAATG 2 cut(s) 16, 39
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 3 cut(s) 25, 348, 456
BseGI GGATG 3 cut(s) 134, 554, 650
BseLI CCNNNNNNNGG 2 cut(s) 379, 524
BseMI GCAATG 2 cut(s) 16, 39
BseMII CTCAG 2 cut(s) 587, 670
BseNI ACTGG 3 cut(s) 188, 224, 272
BseRI GAGGAG 9 cut(s) 90, 207, 210, 303, 306, 333, 378, 381, 405
BseSI GKGCMC 2 cut(s) 509, 569
BseXI GCAGC 5 cut(s) 136, 157, 160, 503, 555
BseYI CCCAGC 5 cut(s) 145, 166, 430, 442, 539
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 9 cut(s) 63, 245, 260, 293, 338, 368, 398, 507, 567
BshTI ACCGGT 1 cut(s) 124
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 532
BslFI GGGAC 2 cut(s) 425, 522
BslI CCNNNNNNNGG 2 cut(s) 379, 524
BsmAI GTCTC 1 cut(s) 576
BsmBI CGTCTC 1 cut(s) 576
BsmFI GGGAC 2 cut(s) 425, 522
BsnI GGCC 9 cut(s) 63, 245, 260, 293, 338, 368, 398, 507, 567
Bsp120I GGGCCC 2 cut(s) 505, 565
Bsp1286I GDGCHC 4 cut(s) 509, 532, 569, 652
Bsp143I GATC 1 cut(s) 583
BspACI CCGC 6 cut(s) 44, 72, 153, 195, 239, 306
BspANI GGCC 9 cut(s) 63, 245, 260, 293, 338, 368, 398, 507, 567
BspCNI CTCAG 2 cut(s) 586, 669
BspLI GGNNCC 4 cut(s) 480, 507, 538, 567
BspMAI CTGCAG 1 cut(s) 493
BspQI GCTCTTC 1 cut(s) 657
BsrDI GCAATG 2 cut(s) 16, 39
BsrFI RCCGGY 4 cut(s) 124, 241, 334, 364
BsrI ACTGG 3 cut(s) 188, 224, 272
BssAI RCCGGY 4 cut(s) 124, 241, 334, 364
BssECI CCNNGG 3 cut(s) 25, 348, 456
BssMI GATC 1 cut(s) 583
BssT1I CCWWGG 2 cut(s) 25, 456
Bst2UI CCWGG 1 cut(s) 534
Bst6I CTCTTC 1 cut(s) 657
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 573, 656
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 3 cut(s) 134, 554, 650
BstH2I RGCGCY 2 cut(s) 282, 518
BstHHI GCGC 3 cut(s) 233, 281, 517
BstKTI GATC 1 cut(s) 586
BstMAI GTCTC 1 cut(s) 576
BstMBI GATC 1 cut(s) 583
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 3 cut(s) 36, 95, 419
BstNI CCWGG 1 cut(s) 534
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 4 cut(s) 348, 502, 532, 562
BstSFI CTRYAG 1 cut(s) 489
BstSLI GKGCMC 2 cut(s) 509, 569
BstV1I GCAGC 5 cut(s) 136, 157, 160, 503, 555
BsuRI GGCC 9 cut(s) 63, 245, 260, 293, 338, 368, 398, 507, 567
BtgZI GCGATG 1 cut(s) 408
BtsCI GGATG 3 cut(s) 134, 554, 650
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 84, 195
Cac8I GCNNGC 1 cut(s) 243
CaiI CAGNNNCTG 1 cut(s) 173
CfoI GCGC 3 cut(s) 233, 281, 517
Cfr10I RCCGGY 4 cut(s) 124, 241, 334, 364
Cfr13I GGNCC 5 cut(s) 505, 506, 536, 565, 566
CspAI ACCGGT 1 cut(s) 124
DdeI CTNAG 2 cut(s) 573, 656
DpnI GATC 1 cut(s) 585
DpnII GATC 1 cut(s) 583
EaeI YGGCCR 6 cut(s) 243, 258, 291, 336, 366, 396
Eam1104I CTCTTC 1 cut(s) 657
EarI CTCTTC 1 cut(s) 657
Ecl136II GAGCTC 1 cut(s) 530
Eco130I CCWWGG 2 cut(s) 25, 456
Eco24I GRGCYC 4 cut(s) 509, 532, 569, 652
Eco47I GGWCC 1 cut(s) 536
Eco47III AGCGCT 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 530
Eco91I GGTNACC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 530
EcoO65I GGTNACC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 532
EcoT14I CCWWGG 2 cut(s) 25, 456
EcoT38I GRGCYC 4 cut(s) 509, 532, 569, 652
ErhI CCWWGG 2 cut(s) 25, 456
Esp3I CGTCTC 1 cut(s) 576
FaqI GGGAC 2 cut(s) 425, 522
FauI CCCGC 3 cut(s) 79, 246, 313
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 6 cut(s) 150, 153, 171, 174, 492, 544
FokI GGATG 3 cut(s) 121, 541, 657
FriOI GRGCYC 4 cut(s) 509, 532, 569, 652
Fsp4HI GCNGC 6 cut(s) 150, 153, 171, 174, 492, 544
FspBI CTAG 1 cut(s) 26
GlaI GCGC 3 cut(s) 232, 280, 516
GluI GCNGC 6 cut(s) 150, 153, 171, 174, 492, 544
GsaI CCCAGC 5 cut(s) 149, 170, 434, 446, 543
GsuI CTGGAG 2 cut(s) 207, 393
HaeII RGCGCY 2 cut(s) 282, 518
HaeIII GGCC 9 cut(s) 63, 245, 260, 293, 338, 368, 398, 507, 567
HhaI GCGC 3 cut(s) 233, 281, 517
Hin6I GCGC 3 cut(s) 231, 279, 515
HinP1I GCGC 3 cut(s) 231, 279, 515
HinfI GANTC 2 cut(s) 4, 54
HphI GGTGA 6 cut(s) 72, 121, 150, 171, 192, 472
Hpy166II GTNNAC 1 cut(s) 609
Hpy188I TCNGA 5 cut(s) 59, 527, 583, 588, 644
Hpy8I GTNNAC 1 cut(s) 609
HpyCH4V TGCA 4 cut(s) 39, 422, 491, 616
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 95, 419
HpyF3I CTNAG 2 cut(s) 573, 656
HspAI GCGC 3 cut(s) 231, 279, 515
KroI GCCGGC 1 cut(s) 241
KroNI GCCGGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 1 cut(s) 583
LguI GCTCTTC 1 cut(s) 657
LmnI GCTCC 8 cut(s) 103, 286, 418, 451, 484, 527, 535, 630
Lsp1109I GCAGC 5 cut(s) 136, 157, 160, 503, 555
LweI GCATC 5 cut(s) 206, 431, 555, 563, 654
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 127, 190
MalI GATC 1 cut(s) 585
MboI GATC 1 cut(s) 583
MboII GAAGA 4 cut(s) 13, 613, 631, 644
MhlI GDGCHC 4 cut(s) 509, 532, 569, 652
MlyI GAGTC 2 cut(s) 13, 63
MmeI TCCRAC 4 cut(s) 37, 128, 505, 506
MroNI GCCGGC 1 cut(s) 241
MspA1I CMGCKG 2 cut(s) 149, 170
MspR9I CCNGG 4 cut(s) 350, 504, 534, 564
MvaI CCWGG 1 cut(s) 534
MwoI GCNNNNNNNGC 3 cut(s) 36, 95, 419
NaeI GCCGGC 1 cut(s) 243
NciI CCSGG 3 cut(s) 350, 504, 564
NdeII GATC 1 cut(s) 583
NgoMIV GCCGGC 1 cut(s) 241
NlaIV GGNNCC 4 cut(s) 480, 507, 538, 567
NmuCI GTSAC 2 cut(s) 127, 190
PciSI GCTCTTC 1 cut(s) 657
PdiI GCCGGC 1 cut(s) 243
PinAI ACCGGT 1 cut(s) 124
PkrI GCNGC 6 cut(s) 151, 154, 172, 175, 493, 545
PleI GAGTC 2 cut(s) 12, 62
PpsI GAGTC 2 cut(s) 12, 62
Psp124BI GAGCTC 1 cut(s) 532
Psp6I CCWGG 1 cut(s) 532
PspEI GGTNACC 1 cut(s) 127
PspFI CCCAGC 5 cut(s) 145, 166, 430, 442, 539
PspGI CCWGG 1 cut(s) 532
PspN4I GGNNCC 4 cut(s) 480, 507, 538, 567
PspOMI GGGCCC 2 cut(s) 505, 565
PspPI GGNCC 5 cut(s) 505, 506, 536, 565, 566
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 1 cut(s) 173
PvuII CAGCTG 2 cut(s) 149, 170
SacI GAGCTC 1 cut(s) 532
SapI GCTCTTC 1 cut(s) 657
SatI GCNGC 6 cut(s) 150, 153, 171, 174, 492, 544
Sau3AI GATC 1 cut(s) 583
Sau96I GGNCC 5 cut(s) 505, 506, 536, 565, 566
SchI GAGTC 2 cut(s) 13, 63
ScrFI CCNGG 4 cut(s) 350, 504, 534, 564
SduI GDGCHC 4 cut(s) 509, 532, 569, 652
SfaNI GCATC 5 cut(s) 206, 431, 555, 563, 654
SfcI CTRYAG 1 cut(s) 489
SinI GGWCC 1 cut(s) 536
SsiI CCGC 6 cut(s) 44, 72, 153, 195, 239, 306
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 532
StyD4I CCNGG 4 cut(s) 348, 502, 532, 562
StyI CCWWGG 2 cut(s) 25, 456
TaqI TCGA 1 cut(s) 549
TauI GCSGC 1 cut(s) 155
TscAI CASTG 2 cut(s) 91, 195
TseFI GTSAC 2 cut(s) 127, 190
TseI GCWGC 5 cut(s) 149, 170, 173, 491, 543
Tsp45I GTSAC 2 cut(s) 127, 190
TspRI CASTG 2 cut(s) 91, 195
VpaK11BI GGWCC 1 cut(s) 536
XmaJI CCTAGG 1 cut(s) 25
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.