RLG00000002376

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000072
Physical Location & Seq
Forward (+)
33024390 .. 33025241
852 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002376

Sequence Viewer

Length: 462 bp
ATGAAACAGTTTAAAGAAACAAATGCCATAGGCAACGAGAAAATTAGCTTATATAGCAGTATAACTGATAGTGGTATAGTGAGGTTTACAAGATCTACAGTCTTGAAGAATGTAAAAGAAAGGCCGTCTGACTTGAAAGAAGCTGAAGATCCGCAACCGGAGTCTATGCAGGTTACTGAAGACCTTGCAGCCTTTAAGATGCCATCTAAGTTTTATGATGTTGGGAAACTGAGTTTAGAGGCCACTGATCTAGTACATCAAGTGGAGGAGTGGCAAGAAGAGTATGAGAAAGCGCAGCTTAAAAAACTGATGCAGTTTGTAAACCATAATAGTGATCAGAGTTCTGCTCAAGAAGAAAGAGGTTGGCAGCCACCTGACTCTCAGAGTATCAAGTTGAATTTTGGTGGGGGCTTGCGATTGCAAGAGGGGTTGTGCAGGTGTGGGTGCGGTGTTGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

154

Amino Acids

17.35

Weight (kDa)

4.99

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 426
Acc36I ACCTGC 2 cut(s) 160, 426
AciI CCGC 2 cut(s) 152, 447
AclWI GGATC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 397
AcuI CTGAAG 2 cut(s) 165, 198
AfaI GTAC 1 cut(s) 255
AgsI TTSAA 3 cut(s) 106, 136, 397
AluBI AGCT 3 cut(s) 48, 143, 298
AluI AGCT 3 cut(s) 48, 143, 298
AlwI GGATC 1 cut(s) 143
AoxI GGCC 2 cut(s) 122, 240
ApeKI GCWGC 3 cut(s) 188, 295, 367
ApoI RAATTY 1 cut(s) 397
AspLEI GCGC 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 3 cut(s) 200, 307, 379
BccI CCATC 1 cut(s) 211
BceAI ACGGC 1 cut(s) 109
BclI TGATCA 1 cut(s) 334
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 96
BfuAI ACCTGC 2 cut(s) 160, 426
BglII AGATCT 1 cut(s) 92
BisI GCNGC 3 cut(s) 189, 296, 368
BlsI GCNGC 3 cut(s) 190, 297, 369
BmsI GCATC 2 cut(s) 189, 300
BpiI GAAGAC 1 cut(s) 186
BplI GAGNNNNNCTC 2 cut(s) 331, 363
BpuEI CTTGAG 1 cut(s) 333
BsaWI WCCGGW 1 cut(s) 157
BseMII CTCAG 2 cut(s) 221, 395
BseRI GAGGAG 1 cut(s) 281
BseXI GCAGC 3 cut(s) 200, 307, 379
BsgI GTGCAG 1 cut(s) 454
BshFI GGCC 2 cut(s) 124, 242
BsiSI CCGG 1 cut(s) 158
BsnI GGCC 2 cut(s) 124, 242
Bsp143I GATC 4 cut(s) 92, 148, 247, 334
BspACI CCGC 2 cut(s) 152, 447
BspANI GGCC 2 cut(s) 124, 242
BspCNI CTCAG 2 cut(s) 222, 394
BspMI ACCTGC 2 cut(s) 160, 426
BspPI GGATC 1 cut(s) 143
BssMI GATC 4 cut(s) 92, 148, 247, 334
Bst4CI ACNGT 2 cut(s) 9, 100
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 413
BstDEI CTNAG 3 cut(s) 207, 230, 381
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 4 cut(s) 95, 151, 250, 337
BstMBI GATC 4 cut(s) 92, 148, 247, 334
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 3 cut(s) 200, 307, 379
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 2 cut(s) 92, 148
BstYI RGATCY 2 cut(s) 92, 148
BsuRI GGCC 2 cut(s) 124, 242
BtsIMutI CAGTG 1 cut(s) 243
BveI ACCTGC 2 cut(s) 160, 426
Cac8I GCNNGC 1 cut(s) 413
CfoI GCGC 1 cut(s) 295
Csp6I GTAC 1 cut(s) 254
CviJI RGCY 8 cut(s) 48, 124, 143, 191, 242, 298, 370, 411
CviKI_1 RGCY 8 cut(s) 48, 124, 143, 191, 242, 298, 370, 411
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 3 cut(s) 207, 230, 381
DpnI GATC 4 cut(s) 94, 150, 249, 336
DpnII GATC 4 cut(s) 92, 148, 247, 334
DraI TTTAAA 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco57I CTGAAG 2 cut(s) 165, 198
FaiI YATR 9 cut(s) 29, 52, 54, 62, 77, 167, 216, 285, 327
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 3 cut(s) 189, 296, 368
Fsp4HI GCNGC 3 cut(s) 189, 296, 368
FspBI CTAG 1 cut(s) 251
GlaI GCGC 1 cut(s) 294
GluI GCNGC 3 cut(s) 189, 296, 368
HaeIII GGCC 2 cut(s) 124, 242
HapII CCGG 1 cut(s) 158
HhaI GCGC 1 cut(s) 295
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HinfI GANTC 2 cut(s) 161, 377
HpaII CCGG 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 87, 322
Hpy188I TCNGA 3 cut(s) 130, 339, 384
Hpy188III TCNNGA 2 cut(s) 103, 350
Hpy8I GTNNAC 2 cut(s) 87, 322
HpyCH4III ACNGT 2 cut(s) 9, 100
HpyCH4V TGCA 5 cut(s) 169, 188, 313, 421, 435
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 3 cut(s) 207, 230, 381
HspAI GCGC 1 cut(s) 293
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 4 cut(s) 92, 148, 247, 334
LpnPI CCDG 4 cut(s) 155, 171, 387, 421
Lsp1109I GCAGC 3 cut(s) 200, 307, 379
LweI GCATC 2 cut(s) 189, 300
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 172
MalI GATC 4 cut(s) 94, 150, 249, 336
MboI GATC 4 cut(s) 92, 148, 247, 334
MboII GAAGA 5 cut(s) 118, 158, 191, 290, 365
MflI RGATCY 2 cut(s) 92, 148
MluCI AATT 2 cut(s) 42, 397
MlyI GAGTC 2 cut(s) 170, 371
MnlI CCTC 6 cut(s) 75, 232, 259, 353, 418, 448
MseI TTAA 3 cut(s) 12, 195, 300
MslI CAYNNNNRTG 1 cut(s) 330
MspI CCGG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeII GATC 4 cut(s) 92, 148, 247, 334
PaqCI CACCTGC 1 cut(s) 426
PkrI GCNGC 3 cut(s) 190, 297, 369
PleI GAGTC 2 cut(s) 169, 371
PpsI GAGTC 2 cut(s) 169, 371
PsuI RGATCY 2 cut(s) 92, 148
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 3 cut(s) 12, 195, 300
SatI GCNGC 3 cut(s) 189, 296, 368
Sau3AI GATC 4 cut(s) 92, 148, 247, 334
SchI GAGTC 2 cut(s) 170, 371
SetI ASST 9 cut(s) 50, 86, 145, 174, 186, 300, 364, 376, 440
SfaNI GCATC 2 cut(s) 189, 300
SfcI CTRYAG 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
Sse9I AATT 2 cut(s) 42, 397
SsiI CCGC 2 cut(s) 152, 447
SspMI CTAG 1 cut(s) 251
TaaI ACNGT 2 cut(s) 9, 100
TasI AATT 2 cut(s) 42, 397
TatI WGTACW 1 cut(s) 253
Tru1I TTAA 3 cut(s) 12, 195, 300
Tru9I TTAA 3 cut(s) 12, 195, 300
TscAI CASTG 1 cut(s) 250
TseI GCWGC 3 cut(s) 188, 295, 367
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 250
XapI RAATTY 1 cut(s) 397
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.