Rorug01G0302600

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000072
Physical Location & Seq
Forward (+)
41839154 .. 41843254
4101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0302600.1

Sequence Viewer

Length: 1188 bp
ATGGTGGCTTCAAGGCCGGTCTCGCCTTCGTGGATGAGCACAGCAGCGAGCAGAGTTGATGCCAATTTCAGAGAAAGCAAAGAACAACAAAAACAGAGGCGGCAGCAGCAGAACCAATCTGTTCCCATTCCTGATGCCAATTTGAGTTTCGGAGAGAGGGCTTTGTCTGCTGCTGGTGCTGCTTTTGTTTCCTCGATTCTCGTGAACCCTCTCGATGTTGCCAAGACAAGGTTGCAAGCGCAGGCTGCCGGAGTACCTTACCAGGGCCTATGTGGTACGCCTTGCATTGAAACAAACACGATGCTTCCAGATTTAAGATCATCTGCGCTACGCACACCTTCGCTAATTGGATCCAAGACTGTCTGCCCACCAGAATGTAACCAGTATAAAGGAACACTGGATGTGCTGTTGAAAGTCATACGTCAGGAAGGATTTTGGAGACTCTGGAGAGGAACCAATGCAAGCTTAACATTGGCCATACCAACTGTGGGGATCTACATGCCTTGTTATGACATTTTCCGCAATTTGATGGAAGAGTTCACAACTCAGAATGCACCAAATCTAACACCATATGTCCCATTAGTTGCTGGGTCATTAGCACGATCATTGGCTTGTGTCTCTTGTTACCCTATTGAACTGGCAAGGACACGCATGCAGGCCTTCAAGCAAACCCAAGTTGGTGTCAAGCTTCCAGGAGTTTGGGGAACGCTGACTGGGGCCATCAACCCTGTCAAGAGTACAAACCCCCTTCATAACTTACAAAACTATCGCATCTTGTGGACTGGCCTTGGAGCTCAACTTGCTCGTGATGTTCCTTTTTCTGCAATCTGTTGGTCAACTCTTGAGCCAATAAGGCGCAGAATTCTTGGTCTGGTAGGTGATGAACCTAGTGCAGCCACTATCCTTGGGGCAAATTTCTCTGCTGGATTTGTTGCAGGAAGCCTTGCAGCTGCTGCTACATGTCCGCTAGATGTGGCAAAAACCCGACGACAGATAGAGGATCCTACAAGGGCATTGAAGATGACAACAAGACAAACTTTGCTTGAGATTTGGAGGGATGGAGGAATGAAGGGGTTGTTTATGGGAATTGGTCCACGTGTTGGTCGAGCTGGCCCTTCAGTTGGGATTGTTGTCTCCTTTTATGAAGTTGTCAAGTATGCTATTCATTATAGACAGCTGACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RVT_1 RVT_3 zf-RVT

Protein Analysis

395

Amino Acids

43.03

Weight (kDa)

9.68

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 48 - 84 4.7e-06 Mitochondrial carrier protein
Mito_carr PF00153 129 - 178 5.2e-08 Mitochondrial carrier protein
Mito_carr PF00153 188 - 288 3.9e-10 Mitochondrial carrier protein
Mito_carr PF00153 303 - 388 2.3e-16 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1100
AciI CCGC 3 cut(s) 100, 520, 965
AclWI GGATC 5 cut(s) 345, 358, 500, 995, 1008
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 2 cut(s) 861, 913
AcuI CTGAAG 1 cut(s) 1101
AcvI CACGTG 1 cut(s) 1097
AfaI GTAC 3 cut(s) 255, 277, 739
AfiI CCNNNNNNNGG 5 cut(s) 228, 263, 488, 1100, 1121
AflIII ACRYGT 2 cut(s) 959, 1096
AgsI TTSAA 6 cut(s) 12, 290, 412, 635, 664, 1018
AjnI CCWGG 2 cut(s) 261, 691
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AluBI AGCT 6 cut(s) 465, 688, 794, 950, 1109, 1177
AluI AGCT 6 cut(s) 465, 688, 794, 950, 1109, 1177
Alw21I GWGCWC 2 cut(s) 41, 796
Alw26I GTCTC 4 cut(s) 25, 433, 622, 1138
AlwI GGATC 5 cut(s) 345, 358, 500, 995, 1008
AlwNI CAGNNNCTG 1 cut(s) 953
AoxI GGCC 7 cut(s) 14, 265, 474, 657, 717, 784, 1111
ApoI RAATTY 2 cut(s) 861, 913
AspLEI GCGC 3 cut(s) 241, 328, 858
AspS9I GGNCC 4 cut(s) 265, 717, 1091, 1112
AsuHPI GGTGA 1 cut(s) 890
AvaII GGWCC 1 cut(s) 1091
BalI TGGCCA 1 cut(s) 476
BamHI GGATCC 2 cut(s) 350, 1000
BanII GRGCYC 1 cut(s) 796
BauI CACGAG 2 cut(s) 200, 804
BbrPI CACGTG 1 cut(s) 1097
Bbv12I GWGCWC 2 cut(s) 41, 796
BccI CCATC 3 cut(s) 523, 728, 1052
BciT130I CCWGG 2 cut(s) 263, 693
BcoDI GTCTC 4 cut(s) 25, 433, 622, 1138
BfaI CTAG 2 cut(s) 888, 968
BglI GCCNNNNNGGC 1 cut(s) 853
Bme1390I CCNGG 2 cut(s) 263, 693
Bme18I GGWCC 1 cut(s) 1091
BmgT120I GGNCC 4 cut(s) 265, 717, 1091, 1112
BmiI GGNNCC 4 cut(s) 352, 454, 718, 1002
BmrFI CCNGG 2 cut(s) 263, 693
BmrI ACTGGG 1 cut(s) 723
BmsI GCATC 4 cut(s) 49, 124, 291, 780
BmuI ACTGGG 1 cut(s) 723
BpmI CTGGAG 1 cut(s) 466
BpuEI CTTGAG 2 cut(s) 863, 1064
BsaAI YACGTR 1 cut(s) 1097
BsaI GGTCTC 1 cut(s) 25
BsaJI CCNNGG 3 cut(s) 262, 787, 904
Bsc4I CCNNNNNNNGG 5 cut(s) 228, 263, 488, 1100, 1121
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 5 cut(s) 382, 402, 642, 718, 787
BseBI CCWGG 2 cut(s) 263, 693
BseDI CCNNGG 3 cut(s) 262, 787, 904
BseGI GGATG 3 cut(s) 39, 406, 1063
BseLI CCNNNNNNNGG 5 cut(s) 228, 263, 488, 1100, 1121
BseMII CTCAG 2 cut(s) 560, 1173
BseNI ACTGG 5 cut(s) 382, 402, 642, 718, 787
BseYI CCCAGC 1 cut(s) 587
BsgI GTGCAG 1 cut(s) 912
BshFI GGCC 7 cut(s) 16, 267, 476, 659, 719, 786, 1113
BsiHKAI GWGCWC 2 cut(s) 41, 796
BsiSI CCGG 2 cut(s) 17, 249
BslFI GGGAC 1 cut(s) 560
BslI CCNNNNNNNGG 5 cut(s) 228, 263, 488, 1100, 1121
BsmAI GTCTC 4 cut(s) 25, 433, 622, 1138
BsmFI GGGAC 1 cut(s) 560
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 7 cut(s) 16, 267, 476, 659, 719, 786, 1113
Bso31I GGTCTC 1 cut(s) 25
Bsp1286I GDGCHC 2 cut(s) 41, 796
Bsp143I GATC 5 cut(s) 317, 350, 492, 602, 1000
BspACI CCGC 3 cut(s) 100, 520, 965
BspANI GGCC 7 cut(s) 16, 267, 476, 659, 719, 786, 1113
BspCNI CTCAG 2 cut(s) 559, 1174
BspLI GGNNCC 4 cut(s) 352, 454, 718, 1002
BspPI GGATC 5 cut(s) 345, 358, 500, 995, 1008
BspTNI GGTCTC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 5 cut(s) 382, 402, 642, 718, 787
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 3 cut(s) 262, 787, 904
BssMI GATC 5 cut(s) 317, 350, 492, 602, 1000
BssSI CACGAG 2 cut(s) 200, 804
BssT1I CCWWGG 2 cut(s) 787, 904
Bst2BI CACGAG 2 cut(s) 200, 804
Bst2UI CCWGG 2 cut(s) 263, 693
Bst4CI ACNGT 2 cut(s) 361, 487
Bst6I CTCTTC 1 cut(s) 528
BstAPI GCANNNNNTGC 1 cut(s) 953
BstBAI YACGTR 1 cut(s) 1097
BstC8I GCNNGC 7 cut(s) 49, 237, 243, 463, 653, 657, 1111
BstDEI CTNAG 2 cut(s) 546, 1182
BstF5I GGATG 3 cut(s) 39, 406, 1063
BstHHI GCGC 3 cut(s) 241, 328, 858
BstKTI GATC 5 cut(s) 320, 353, 495, 605, 1003
BstMAI GTCTC 4 cut(s) 25, 433, 622, 1138
BstMBI GATC 5 cut(s) 317, 350, 492, 602, 1000
BstMWI GCNNNNNNNGC 9 cut(s) 22, 106, 167, 176, 179, 245, 800, 853, 953
BstNI CCWGG 2 cut(s) 263, 693
BstNSI RCATGY 3 cut(s) 502, 655, 963
BstSCI CCNGG 2 cut(s) 261, 691
BstX2I RGATCY 3 cut(s) 350, 492, 1000
BstXI CCANNNNNNTGG 1 cut(s) 699
BstYI RGATCY 3 cut(s) 350, 492, 1000
BsuRI GGCC 7 cut(s) 16, 267, 476, 659, 719, 786, 1113
BtsCI GGATG 3 cut(s) 39, 406, 1063
BtsIMutI CAGTG 1 cut(s) 395
Cac8I GCNNGC 7 cut(s) 49, 237, 243, 463, 653, 657, 1111
CaiI CAGNNNCTG 1 cut(s) 953
CfoI GCGC 3 cut(s) 241, 328, 858
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 4 cut(s) 265, 717, 1091, 1112
Csp6I GTAC 3 cut(s) 254, 276, 738
CspCI CAANNNNNGTGG 2 cut(s) 886, 921
CviAII CATG 3 cut(s) 499, 652, 960
CviQI GTAC 3 cut(s) 254, 276, 738
DdeI CTNAG 2 cut(s) 546, 1182
DpnI GATC 5 cut(s) 319, 352, 494, 604, 1002
DpnII GATC 5 cut(s) 317, 350, 492, 602, 1000
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Ecl136II GAGCTC 1 cut(s) 794
Eco130I CCWWGG 2 cut(s) 787, 904
Eco147I AGGCCT 1 cut(s) 659
Eco24I GRGCYC 1 cut(s) 796
Eco31I GGTCTC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 1091
Eco53kI GAGCTC 1 cut(s) 794
Eco57I CTGAAG 1 cut(s) 1101
Eco72I CACGTG 1 cut(s) 1097
EcoICRI GAGCTC 1 cut(s) 794
EcoO109I RGGNCCY 1 cut(s) 265
EcoRI GAATTC 1 cut(s) 861
EcoRII CCWGG 2 cut(s) 261, 691
EcoT14I CCWWGG 2 cut(s) 787, 904
EcoT38I GRGCYC 1 cut(s) 796
ErhI CCWWGG 2 cut(s) 787, 904
FaeI CATG 3 cut(s) 502, 655, 963
FalI AAGNNNNNCTT 2 cut(s) 1021, 1053
FaqI GGGAC 1 cut(s) 560
FatI CATG 3 cut(s) 498, 651, 959
FauNDI CATATG 1 cut(s) 571
FokI GGATG 3 cut(s) 46, 413, 1070
FriOI GRGCYC 1 cut(s) 796
FspBI CTAG 2 cut(s) 888, 968
GlaI GCGC 3 cut(s) 240, 327, 857
GsaI CCCAGC 1 cut(s) 591
GsuI CTGGAG 1 cut(s) 466
HaeIII GGCC 7 cut(s) 16, 267, 476, 659, 719, 786, 1113
HapII CCGG 2 cut(s) 17, 249
HhaI GCGC 3 cut(s) 241, 328, 858
Hin1II CATG 3 cut(s) 502, 655, 963
Hin6I GCGC 3 cut(s) 239, 326, 856
HinP1I GCGC 3 cut(s) 239, 326, 856
HincII GTYRAC 1 cut(s) 837
HindII GTYRAC 1 cut(s) 837
HindIII AAGCTT 2 cut(s) 463, 686
HinfI GANTC 2 cut(s) 196, 441
HpaII CCGG 2 cut(s) 17, 249
HphI GGTGA 1 cut(s) 890
Hpy166II GTNNAC 5 cut(s) 205, 540, 780, 837, 1094
Hpy188I TCNGA 3 cut(s) 71, 152, 549
Hpy188III TCNNGA 9 cut(s) 131, 202, 212, 308, 425, 445, 733, 806, 842
Hpy8I GTNNAC 5 cut(s) 205, 540, 780, 837, 1094
Hpy99I CGWCG 1 cut(s) 990
HpyAV CCTTC 7 cut(s) 36, 348, 422, 670, 758, 1063, 1125
HpyCH4III ACNGT 2 cut(s) 361, 487
HpyCH4IV ACGT 2 cut(s) 421, 1096
HpyCH4V TGCA 9 cut(s) 235, 285, 461, 554, 655, 824, 893, 935, 947
HpyF10VI GCNNNNNNNGC 9 cut(s) 22, 106, 167, 176, 179, 245, 800, 853, 953
HpyF3I CTNAG 2 cut(s) 546, 1182
HpySE526I ACGT 2 cut(s) 421, 1096
Hsp92II CATG 3 cut(s) 502, 655, 963
HspAI GCGC 3 cut(s) 239, 326, 856
Kzo9I GATC 5 cut(s) 317, 350, 492, 602, 1000
LmnI GCTCC 1 cut(s) 791
LweI GCATC 4 cut(s) 49, 124, 291, 780
MaeI CTAG 2 cut(s) 888, 968
MaeII ACGT 2 cut(s) 421, 1096
MaeIII GTNAC 2 cut(s) 377, 623
MalI GATC 5 cut(s) 319, 352, 494, 604, 1002
MboI GATC 5 cut(s) 317, 350, 492, 602, 1000
MboII GAAGA 2 cut(s) 545, 1030
MflI RGATCY 3 cut(s) 350, 492, 1000
MhlI GDGCHC 2 cut(s) 41, 796
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 7 cut(s) 64, 139, 345, 523, 861, 913, 1086
MluNI TGGCCA 1 cut(s) 476
MlyI GAGTC 1 cut(s) 435
MnlI CCTC 8 cut(s) 90, 150, 202, 219, 443, 991, 1047, 1055
Mox20I TGGCCA 1 cut(s) 476
MscI TGGCCA 1 cut(s) 476
MseI TTAA 2 cut(s) 314, 467
MslI CAYNNNNRTG 1 cut(s) 373
Msp20I TGGCCA 1 cut(s) 476
MspA1I CMGCKG 2 cut(s) 950, 1177
MspI CCGG 2 cut(s) 17, 249
MspR9I CCNGG 2 cut(s) 263, 693
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 2 cut(s) 263, 693
MwoI GCNNNNNNNGC 9 cut(s) 22, 106, 167, 176, 179, 245, 800, 853, 953
NdeI CATATG 1 cut(s) 571
NdeII GATC 5 cut(s) 317, 350, 492, 602, 1000
NlaIII CATG 3 cut(s) 502, 655, 963
NlaIV GGNNCC 4 cut(s) 352, 454, 718, 1002
NspI RCATGY 3 cut(s) 502, 655, 963
PaeI GCATGC 1 cut(s) 655
PceI AGGCCT 1 cut(s) 659
PciI ACATGT 1 cut(s) 959
PcsI WCGNNNNNNNCGW 1 cut(s) 1102
PctI GAATGC 1 cut(s) 556
PfeI GAWTC 1 cut(s) 196
PflMI CCANNNNNTGG 1 cut(s) 1100
PfoI TCCNGGA 1 cut(s) 691
PleI GAGTC 1 cut(s) 435
PmaCI CACGTG 1 cut(s) 1097
PmlI CACGTG 1 cut(s) 1097
PpsI GAGTC 1 cut(s) 435
Ppu21I YACGTR 1 cut(s) 1097
PscI ACATGT 1 cut(s) 959
Psp124BI GAGCTC 1 cut(s) 796
Psp6I CCWGG 2 cut(s) 261, 691
PspCI CACGTG 1 cut(s) 1097
PspFI CCCAGC 1 cut(s) 587
PspGI CCWGG 2 cut(s) 261, 691
PspN4I GGNNCC 4 cut(s) 352, 454, 718, 1002
PspPI GGNCC 4 cut(s) 265, 717, 1091, 1112
PstNI CAGNNNCTG 1 cut(s) 953
PsuI RGATCY 3 cut(s) 350, 492, 1000
PvuII CAGCTG 2 cut(s) 950, 1177
RsaI GTAC 3 cut(s) 255, 277, 739
RsaNI GTAC 3 cut(s) 254, 276, 738
RseI CAYNNNNRTG 1 cut(s) 373
SacI GAGCTC 1 cut(s) 796
SaqAI TTAA 2 cut(s) 314, 467
Sau3AI GATC 5 cut(s) 317, 350, 492, 602, 1000
Sau96I GGNCC 4 cut(s) 265, 717, 1091, 1112
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 2 cut(s) 263, 693
SduI GDGCHC 2 cut(s) 41, 796
SfaNI GCATC 4 cut(s) 49, 124, 291, 780
SinI GGWCC 1 cut(s) 1091
SmiMI CAYNNNNRTG 1 cut(s) 373
SmlI CTYRAG 2 cut(s) 842, 1043
SmoI CTYRAG 2 cut(s) 842, 1043
SphI GCATGC 1 cut(s) 655
Sse9I AATT 7 cut(s) 64, 139, 345, 523, 861, 913, 1086
SseBI AGGCCT 1 cut(s) 659
SsiI CCGC 3 cut(s) 100, 520, 965
SspMI CTAG 2 cut(s) 888, 968
SstI GAGCTC 1 cut(s) 796
StuI AGGCCT 1 cut(s) 659
StyD4I CCNGG 2 cut(s) 261, 691
StyI CCWWGG 2 cut(s) 787, 904
TaaI ACNGT 2 cut(s) 361, 487
TaiI ACGT 2 cut(s) 424, 1099
TaqI TCGA 3 cut(s) 194, 213, 1105
TasI AATT 7 cut(s) 64, 139, 345, 523, 861, 913, 1086
TatI WGTACW 1 cut(s) 737
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 2 cut(s) 314, 467
Tru9I TTAA 2 cut(s) 314, 467
TscAI CASTG 1 cut(s) 402
TspDTI ATGAA 5 cut(s) 740, 897, 1082, 1154, 1158
TspRI CASTG 1 cut(s) 402
Van91I CCANNNNNTGG 1 cut(s) 1100
VpaK11BI GGWCC 1 cut(s) 1091
XapI RAATTY 2 cut(s) 861, 913
XceI RCATGY 3 cut(s) 502, 655, 963
XcmI CCANNNNNNNNNTGG 2 cut(s) 269, 484
XspI CTAG 2 cut(s) 888, 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.