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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 176 |
| AatII | GACGTC | 1 cut(s) | 162 |
| Acc36I | ACCTGC | 1 cut(s) | 176 |
| AciI | CCGC | 4 cut(s) | 54, 226, 242, 245 |
| AcyI | GRCGYC | 1 cut(s) | 159 |
| AgeI | ACCGGT | 1 cut(s) | 269 |
| AjnI | CCWGG | 1 cut(s) | 169 |
| AluBI | AGCT | 1 cut(s) | 6 |
| AluI | AGCT | 1 cut(s) | 6 |
| Alw26I | GTCTC | 2 cut(s) | 235, 260 |
| AoxI | GGCC | 1 cut(s) | 166 |
| ApeKI | GCWGC | 2 cut(s) | 6, 121 |
| AsiGI | ACCGGT | 1 cut(s) | 269 |
| AspLEI | GCGC | 2 cut(s) | 107, 193 |
| AspS9I | GGNCC | 3 cut(s) | 84, 167, 218 |
| AsuC2I | CCSGG | 1 cut(s) | 88 |
| AsuHPI | GGTGA | 1 cut(s) | 259 |
| AvaII | GGWCC | 2 cut(s) | 84, 218 |
| BbvI | GCAGC | 1 cut(s) | 133 |
| BceAI | ACGGC | 1 cut(s) | 181 |
| BciT130I | CCWGG | 1 cut(s) | 171 |
| BcnI | CCSGG | 1 cut(s) | 88 |
| BcoDI | GTCTC | 2 cut(s) | 235, 260 |
| BfaI | CTAG | 2 cut(s) | 26, 252 |
| BfoI | RGCGCY | 1 cut(s) | 108 |
| BfuAI | ACCTGC | 1 cut(s) | 176 |
| BisI | GCNGC | 4 cut(s) | 7, 55, 122, 243 |
| BlsI | GCNGC | 4 cut(s) | 8, 56, 123, 244 |
| Bme1390I | CCNGG | 2 cut(s) | 88, 171 |
| Bme18I | GGWCC | 2 cut(s) | 84, 218 |
| BmgT120I | GGNCC | 3 cut(s) | 84, 167, 218 |
| BmrFI | CCNGG | 2 cut(s) | 88, 171 |
| BmsI | GCATC | 2 cut(s) | 172, 267 |
| BpmI | CTGGAG | 1 cut(s) | 302 |
| BpuMI | CCSGG | 1 cut(s) | 88 |
| BsaBI | GATNNNNATC | 1 cut(s) | 21 |
| BsaHI | GRCGYC | 1 cut(s) | 159 |
| BsaI | GGTCTC | 2 cut(s) | 235, 260 |
| BsaJI | CCNNGG | 3 cut(s) | 163, 169, 221 |
| BsaWI | WCCGGW | 1 cut(s) | 269 |
| Bse118I | RCCGGY | 1 cut(s) | 269 |
| Bse1I | ACTGG | 1 cut(s) | 100 |
| Bse8I | GATNNNNATC | 1 cut(s) | 21 |
| BseBI | CCWGG | 1 cut(s) | 171 |
| BseDI | CCNNGG | 3 cut(s) | 163, 169, 221 |
| BseGI | GGATG | 2 cut(s) | 187, 282 |
| BseJI | GATNNNNATC | 1 cut(s) | 21 |
| BseNI | ACTGG | 1 cut(s) | 100 |
| BseRI | GAGGAG | 1 cut(s) | 80 |
| BseXI | GCAGC | 1 cut(s) | 133 |
| BseYI | CCCAGC | 1 cut(s) | 153 |
| Bsh1285I | CGRYCG | 1 cut(s) | 274 |
| BshFI | GGCC | 1 cut(s) | 168 |
| BshTI | ACCGGT | 1 cut(s) | 269 |
| BsiEI | CGRYCG | 1 cut(s) | 274 |
| BsiSI | CCGG | 2 cut(s) | 87, 270 |
| BslFI | GGGAC | 1 cut(s) | 170 |
| BsmAI | GTCTC | 2 cut(s) | 235, 260 |
| BsmFI | GGGAC | 1 cut(s) | 170 |
| BsnI | GGCC | 1 cut(s) | 168 |
| Bso31I | GGTCTC | 2 cut(s) | 235, 260 |
| Bsp143I | GATC | 1 cut(s) | 22 |
| BspACI | CCGC | 4 cut(s) | 54, 226, 242, 245 |
| BspANI | GGCC | 1 cut(s) | 168 |
| BspMI | ACCTGC | 1 cut(s) | 176 |
| BspTNI | GGTCTC | 2 cut(s) | 235, 260 |
| BsrFI | RCCGGY | 1 cut(s) | 269 |
| BsrI | ACTGG | 1 cut(s) | 100 |
| BssAI | RCCGGY | 1 cut(s) | 269 |
| BssECI | CCNNGG | 3 cut(s) | 163, 169, 221 |
| BssMI | GATC | 1 cut(s) | 22 |
| BssNI | GRCGYC | 1 cut(s) | 159 |
| Bst2UI | CCWGG | 1 cut(s) | 171 |
| Bst6I | CTCTTC | 1 cut(s) | 94 |
| BstACI | GRCGYC | 1 cut(s) | 159 |
| BstDEI | CTNAG | 1 cut(s) | 49 |
| BstDSI | CCRYGG | 1 cut(s) | 163 |
| BstF5I | GGATG | 2 cut(s) | 187, 282 |
| BstH2I | RGCGCY | 1 cut(s) | 108 |
| BstHHI | GCGC | 2 cut(s) | 107, 193 |
| BstKTI | GATC | 1 cut(s) | 25 |
| BstMAI | GTCTC | 2 cut(s) | 235, 260 |
| BstMBI | GATC | 1 cut(s) | 22 |
| BstMCI | CGRYCG | 1 cut(s) | 274 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 121 |
| BstNI | CCWGG | 1 cut(s) | 171 |
| BstSCI | CCNGG | 2 cut(s) | 86, 169 |
| BstV1I | GCAGC | 1 cut(s) | 133 |
| BsuRI | GGCC | 1 cut(s) | 168 |
| BtgI | CCRYGG | 1 cut(s) | 163 |
| BtsCI | GGATG | 2 cut(s) | 187, 282 |
| BtsI | GCAGTG | 1 cut(s) | 122 |
| BtsIMutI | CAGTG | 2 cut(s) | 122, 295 |
| BveI | ACCTGC | 1 cut(s) | 176 |
| CfoI | GCGC | 2 cut(s) | 107, 193 |
| Cfr10I | RCCGGY | 1 cut(s) | 269 |
| Cfr13I | GGNCC | 3 cut(s) | 84, 167, 218 |
| CspAI | ACCGGT | 1 cut(s) | 269 |
| CviJI | RGCY | 7 cut(s) | 6, 57, 129, 153, 168, 303, 320 |
| CviKI_1 | RGCY | 7 cut(s) | 6, 57, 129, 153, 168, 303, 320 |
| DdeI | CTNAG | 1 cut(s) | 49 |
| DpnI | GATC | 1 cut(s) | 24 |
| DpnII | GATC | 1 cut(s) | 22 |
| Eam1104I | CTCTTC | 1 cut(s) | 94 |
| EarI | CTCTTC | 1 cut(s) | 94 |
| Eco31I | GGTCTC | 2 cut(s) | 235, 260 |
| Eco47I | GGWCC | 2 cut(s) | 84, 218 |
| EcoRII | CCWGG | 1 cut(s) | 169 |
| FaiI | YATR | 2 cut(s) | 258, 260 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 91, 123 |
| FaqI | GGGAC | 1 cut(s) | 170 |
| FauI | CCCGC | 1 cut(s) | 219 |
| FauNDI | CATATG | 1 cut(s) | 258 |
| Fnu4HI | GCNGC | 4 cut(s) | 7, 55, 122, 243 |
| FokI | GGATG | 2 cut(s) | 194, 289 |
| Fsp4HI | GCNGC | 4 cut(s) | 7, 55, 122, 243 |
| FspBI | CTAG | 2 cut(s) | 26, 252 |
| GlaI | GCGC | 2 cut(s) | 106, 192 |
| GluI | GCNGC | 4 cut(s) | 7, 55, 122, 243 |
| GsaI | CCCAGC | 1 cut(s) | 157 |
| GsuI | CTGGAG | 1 cut(s) | 302 |
| HaeII | RGCGCY | 1 cut(s) | 108 |
| HaeIII | GGCC | 1 cut(s) | 168 |
| HapII | CCGG | 2 cut(s) | 87, 270 |
| HhaI | GCGC | 2 cut(s) | 107, 193 |
| Hin1I | GRCGYC | 1 cut(s) | 159 |
| Hin6I | GCGC | 2 cut(s) | 105, 191 |
| HinP1I | GCGC | 2 cut(s) | 105, 191 |
| HpaII | CCGG | 2 cut(s) | 87, 270 |
| HphI | GGTGA | 1 cut(s) | 259 |
| Hpy166II | GTNNAC | 3 cut(s) | 163, 218, 308 |
| Hpy188I | TCNGA | 1 cut(s) | 276 |
| Hpy8I | GTNNAC | 3 cut(s) | 163, 218, 308 |
| HpyAV | CCTTC | 1 cut(s) | 293 |
| HpyCH4IV | ACGT | 2 cut(s) | 159, 196 |
| HpyCH4V | TGCA | 2 cut(s) | 136, 185 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 121 |
| HpyF3I | CTNAG | 1 cut(s) | 49 |
| HpySE526I | ACGT | 2 cut(s) | 159, 196 |
| Hsp92I | GRCGYC | 1 cut(s) | 159 |
| HspAI | GCGC | 2 cut(s) | 105, 191 |
| Kzo9I | GATC | 1 cut(s) | 22 |
| LmnI | GCTCC | 1 cut(s) | 67 |
| LpnPI | CCDG | 9 cut(s) | 67, 81, 100, 139, 156, 171, 183, 266, 283 |
| Lsp1109I | GCAGC | 1 cut(s) | 133 |
| LweI | GCATC | 2 cut(s) | 172, 267 |
| MaeI | CTAG | 2 cut(s) | 26, 252 |
| MaeII | ACGT | 2 cut(s) | 159, 196 |
| MaeIII | GTNAC | 1 cut(s) | 247 |
| MalI | GATC | 1 cut(s) | 24 |
| MboI | GATC | 1 cut(s) | 22 |
| MboII | GAAGA | 2 cut(s) | 111, 326 |
| MluCI | AATT | 1 cut(s) | 328 |
| MmeI | TCCRAC | 1 cut(s) | 254 |
| MnlI | CCTC | 7 cut(s) | 37, 58, 84, 95, 199, 216, 277 |
| MspI | CCGG | 2 cut(s) | 87, 270 |
| MspR9I | CCNGG | 2 cut(s) | 88, 171 |
| MvaI | CCWGG | 1 cut(s) | 171 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 121 |
| NciI | CCSGG | 1 cut(s) | 88 |
| NdeI | CATATG | 1 cut(s) | 258 |
| NdeII | GATC | 1 cut(s) | 22 |
| NmuCI | GTSAC | 1 cut(s) | 247 |
| PaqCI | CACCTGC | 1 cut(s) | 176 |
| PfoI | TCCNGGA | 1 cut(s) | 86 |
| PinAI | ACCGGT | 1 cut(s) | 269 |
| PkrI | GCNGC | 4 cut(s) | 8, 56, 123, 244 |
| Psp6I | CCWGG | 1 cut(s) | 169 |
| PspFI | CCCAGC | 1 cut(s) | 153 |
| PspGI | CCWGG | 1 cut(s) | 169 |
| PspPI | GGNCC | 3 cut(s) | 84, 167, 218 |
| SatI | GCNGC | 4 cut(s) | 7, 55, 122, 243 |
| Sau3AI | GATC | 1 cut(s) | 22 |
| Sau96I | GGNCC | 3 cut(s) | 84, 167, 218 |
| ScrFI | CCNGG | 2 cut(s) | 88, 171 |
| SetI | ASST | 8 cut(s) | 8, 36, 48, 162, 190, 199, 217, 288 |
| SfaNI | GCATC | 2 cut(s) | 172, 267 |
| SinI | GGWCC | 2 cut(s) | 84, 218 |
| Sse9I | AATT | 1 cut(s) | 328 |
| SsiI | CCGC | 4 cut(s) | 54, 226, 242, 245 |
| SspMI | CTAG | 2 cut(s) | 26, 252 |
| StyD4I | CCNGG | 2 cut(s) | 86, 169 |
| TaiI | ACGT | 2 cut(s) | 162, 199 |
| TaqI | TCGA | 1 cut(s) | 42 |
| TaqII | GACCGA | 1 cut(s) | 235 |
| TasI | AATT | 1 cut(s) | 328 |
| TauI | GCSGC | 2 cut(s) | 57, 245 |
| TscAI | CASTG | 2 cut(s) | 122, 295 |
| TseFI | GTSAC | 1 cut(s) | 247 |
| TseI | GCWGC | 2 cut(s) | 6, 121 |
| Tsp45I | GTSAC | 1 cut(s) | 247 |
| TspRI | CASTG | 2 cut(s) | 122, 295 |
| VpaK11BI | GGWCC | 2 cut(s) | 84, 218 |
| XspI | CTAG | 2 cut(s) | 26, 252 |
| ZraI | GACGTC | 1 cut(s) | 160 |