Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 61 - 172 | 9.1e-09 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 122 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 161 |
| AflIII | ACRYGT | 1 cut(s) | 389 |
| AgsI | TTSAA | 2 cut(s) | 305, 419 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 37, 69 |
| AluBI | AGCT | 4 cut(s) | 82, 263, 287, 494 |
| AluI | AGCT | 4 cut(s) | 82, 263, 287, 494 |
| Alw21I | GWGCWC | 1 cut(s) | 435 |
| Alw26I | GTCTC | 3 cut(s) | 338, 380, 449 |
| AoxI | GGCC | 1 cut(s) | 554 |
| ApeKI | GCWGC | 2 cut(s) | 200, 491 |
| ApoI | RAATTY | 1 cut(s) | 122 |
| AseI | ATTAAT | 1 cut(s) | 579 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 93 |
| AspS9I | GGNCC | 2 cut(s) | 407, 554 |
| AsuHPI | GGTGA | 1 cut(s) | 260 |
| AvaII | GGWCC | 1 cut(s) | 407 |
| BbsI | GAAGAC | 1 cut(s) | 293 |
| Bbv12I | GWGCWC | 1 cut(s) | 435 |
| BbvI | GCAGC | 2 cut(s) | 212, 503 |
| BccI | CCATC | 1 cut(s) | 545 |
| BcoDI | GTCTC | 3 cut(s) | 338, 380, 449 |
| BfaI | CTAG | 2 cut(s) | 158, 284 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 562 |
| BisI | GCNGC | 2 cut(s) | 201, 492 |
| BlsI | GCNGC | 2 cut(s) | 202, 493 |
| Bme18I | GGWCC | 1 cut(s) | 407 |
| BmgT120I | GGNCC | 2 cut(s) | 407, 554 |
| BmiI | GGNNCC | 2 cut(s) | 149, 408 |
| BmsI | GCATC | 1 cut(s) | 187 |
| BpiI | GAAGAC | 1 cut(s) | 293 |
| Bsa29I | ATCGAT | 1 cut(s) | 575 |
| BsaAI | YACGTR | 1 cut(s) | 438 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 161 |
| Bse1I | ACTGG | 1 cut(s) | 451 |
| Bse3DI | GCAATG | 1 cut(s) | 18 |
| BseCI | ATCGAT | 1 cut(s) | 575 |
| BseGI | GGATG | 1 cut(s) | 556 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 161 |
| BseMI | GCAATG | 1 cut(s) | 18 |
| BseMII | CTCAG | 3 cut(s) | 212, 348, 375 |
| BseNI | ACTGG | 1 cut(s) | 451 |
| BseRI | GAGGAG | 2 cut(s) | 370, 416 |
| BseXI | GCAGC | 2 cut(s) | 212, 503 |
| BsgI | GTGCAG | 1 cut(s) | 246 |
| BshFI | GGCC | 1 cut(s) | 556 |
| BshVI | ATCGAT | 1 cut(s) | 575 |
| BsiHKAI | GWGCWC | 1 cut(s) | 435 |
| BsiSI | CCGG | 1 cut(s) | 557 |
| BslFI | GGGAC | 1 cut(s) | 420 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 161 |
| BsmAI | GTCTC | 3 cut(s) | 338, 380, 449 |
| BsmFI | GGGAC | 1 cut(s) | 420 |
| BsmI | GAATGC | 1 cut(s) | 485 |
| BsnI | GGCC | 1 cut(s) | 556 |
| Bsp1286I | GDGCHC | 1 cut(s) | 435 |
| BspANI | GGCC | 1 cut(s) | 556 |
| BspCNI | CTCAG | 3 cut(s) | 213, 349, 376 |
| BspDI | ATCGAT | 1 cut(s) | 575 |
| BspLI | GGNNCC | 2 cut(s) | 149, 408 |
| BsrDI | GCAATG | 1 cut(s) | 18 |
| BsrI | ACTGG | 1 cut(s) | 451 |
| BstBAI | YACGTR | 1 cut(s) | 438 |
| BstDEI | CTNAG | 5 cut(s) | 221, 357, 384, 507, 518 |
| BstF5I | GGATG | 1 cut(s) | 556 |
| BstMAI | GTCTC | 3 cut(s) | 338, 380, 449 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 20, 197, 512, 562 |
| BstNSI | RCATGY | 1 cut(s) | 393 |
| BstV1I | GCAGC | 2 cut(s) | 212, 503 |
| BstV2I | GAAGAC | 1 cut(s) | 293 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 340 |
| Bsu15I | ATCGAT | 1 cut(s) | 575 |
| BsuRI | GGCC | 1 cut(s) | 556 |
| BsuTUI | ATCGAT | 1 cut(s) | 575 |
| BtsCI | GGATG | 1 cut(s) | 556 |
| BtsI | GCAGTG | 2 cut(s) | 105, 326 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 180, 326 |
| Cfr13I | GGNCC | 2 cut(s) | 407, 554 |
| ClaI | ATCGAT | 1 cut(s) | 575 |
| CviAII | CATG | 3 cut(s) | 59, 390, 476 |
| DdeI | CTNAG | 5 cut(s) | 221, 357, 384, 507, 518 |
| DraI | TTTAAA | 1 cut(s) | 127 |
| Eco47I | GGWCC | 1 cut(s) | 407 |
| FaeI | CATG | 3 cut(s) | 62, 393, 479 |
| FaiI | YATR | 9 cut(s) | 60, 75, 267, 290, 320, 391, 441, 477, 569 |
| FaqI | GGGAC | 1 cut(s) | 420 |
| FatI | CATG | 3 cut(s) | 58, 389, 475 |
| Fnu4HI | GCNGC | 2 cut(s) | 201, 492 |
| FokI | GGATG | 1 cut(s) | 563 |
| Fsp4HI | GCNGC | 2 cut(s) | 201, 492 |
| FspBI | CTAG | 2 cut(s) | 158, 284 |
| GluI | GCNGC | 2 cut(s) | 201, 492 |
| HaeIII | GGCC | 1 cut(s) | 556 |
| HapII | CCGG | 1 cut(s) | 557 |
| Hin1II | CATG | 3 cut(s) | 62, 393, 479 |
| HinfI | GANTC | 2 cut(s) | 572, 587 |
| HpaII | CCGG | 1 cut(s) | 557 |
| HphI | GGTGA | 1 cut(s) | 260 |
| Hpy166II | GTNNAC | 1 cut(s) | 251 |
| Hpy188I | TCNGA | 2 cut(s) | 358, 385 |
| Hpy188III | TCNNGA | 1 cut(s) | 419 |
| Hpy8I | GTNNAC | 1 cut(s) | 251 |
| HpyAV | CCTTC | 2 cut(s) | 121, 155 |
| HpyCH4IV | ACGT | 1 cut(s) | 437 |
| HpyCH4V | TGCA | 6 cut(s) | 200, 227, 269, 443, 483, 491 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 20, 197, 512, 562 |
| HpyF3I | CTNAG | 5 cut(s) | 221, 357, 384, 507, 518 |
| HpySE526I | ACGT | 1 cut(s) | 437 |
| Hsp92II | CATG | 3 cut(s) | 62, 393, 479 |
| LmnI | GCTCC | 2 cut(s) | 153, 260 |
| LpnPI | CCDG | 3 cut(s) | 68, 432, 570 |
| Lsp1109I | GCAGC | 2 cut(s) | 212, 503 |
| LweI | GCATC | 1 cut(s) | 187 |
| MaeI | CTAG | 2 cut(s) | 158, 284 |
| MaeII | ACGT | 1 cut(s) | 437 |
| MaeIII | GTNAC | 2 cut(s) | 167, 599 |
| MboII | GAAGA | 3 cut(s) | 98, 131, 293 |
| MfeI | CAATTG | 1 cut(s) | 52 |
| MhlI | GDGCHC | 1 cut(s) | 435 |
| MluCI | AATT | 7 cut(s) | 5, 30, 52, 122, 276, 305, 372 |
| MnlI | CCTC | 7 cut(s) | 124, 181, 209, 352, 391, 394, 397 |
| MroXI | GAANNNNTTC | 1 cut(s) | 93 |
| MseI | TTAA | 6 cut(s) | 126, 212, 375, 461, 546, 579 |
| MslI | CAYNNNNRTG | 2 cut(s) | 338, 428 |
| MspI | CCGG | 1 cut(s) | 557 |
| MunI | CAATTG | 1 cut(s) | 52 |
| Mva1269I | GAATGC | 1 cut(s) | 485 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 20, 197, 512, 562 |
| NlaIII | CATG | 3 cut(s) | 62, 393, 479 |
| NlaIV | GGNNCC | 2 cut(s) | 149, 408 |
| NspI | RCATGY | 1 cut(s) | 393 |
| PciI | ACATGT | 1 cut(s) | 389 |
| PctI | GAATGC | 1 cut(s) | 485 |
| PdmI | GAANNNNTTC | 1 cut(s) | 93 |
| PfeI | GAWTC | 2 cut(s) | 572, 587 |
| PkrI | GCNGC | 2 cut(s) | 202, 493 |
| Ppu21I | YACGTR | 1 cut(s) | 438 |
| PscI | ACATGT | 1 cut(s) | 389 |
| PshBI | ATTAAT | 1 cut(s) | 579 |
| PspN4I | GGNNCC | 2 cut(s) | 149, 408 |
| PspPI | GGNCC | 2 cut(s) | 407, 554 |
| RseI | CAYNNNNRTG | 2 cut(s) | 338, 428 |
| SaqAI | TTAA | 6 cut(s) | 126, 212, 375, 461, 546, 579 |
| SatI | GCNGC | 2 cut(s) | 201, 492 |
| Sau96I | GGNCC | 2 cut(s) | 407, 554 |
| SduI | GDGCHC | 1 cut(s) | 435 |
| SetI | ASST | 9 cut(s) | 84, 211, 265, 289, 297, 301, 440, 496, 606 |
| SfaNI | GCATC | 1 cut(s) | 187 |
| SinI | GGWCC | 1 cut(s) | 407 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 338, 428 |
| Sse9I | AATT | 7 cut(s) | 5, 30, 52, 122, 276, 305, 372 |
| SspMI | CTAG | 2 cut(s) | 158, 284 |
| TaiI | ACGT | 1 cut(s) | 440 |
| TaqI | TCGA | 2 cut(s) | 315, 575 |
| TasI | AATT | 7 cut(s) | 5, 30, 52, 122, 276, 305, 372 |
| TfiI | GAWTC | 2 cut(s) | 572, 587 |
| Tru1I | TTAA | 6 cut(s) | 126, 212, 375, 461, 546, 579 |
| Tru9I | TTAA | 6 cut(s) | 126, 212, 375, 461, 546, 579 |
| TscAI | CASTG | 3 cut(s) | 112, 187, 333 |
| TseI | GCWGC | 2 cut(s) | 200, 491 |
| TspDTI | ATGAA | 1 cut(s) | 492 |
| TspRI | CASTG | 3 cut(s) | 112, 187, 333 |
| VpaK11BI | GGWCC | 1 cut(s) | 407 |
| VspI | ATTAAT | 1 cut(s) | 579 |
| XapI | RAATTY | 1 cut(s) | 122 |
| XceI | RCATGY | 1 cut(s) | 393 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 112 |
| XmnI | GAANNNNTTC | 1 cut(s) | 93 |
| XspI | CTAG | 2 cut(s) | 158, 284 |