Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 123 | 6.4e-25 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 89, 388 |
| AclWI | GGATC | 1 cut(s) | 22 |
| AcsI | RAATTY | 1 cut(s) | 223 |
| AfaI | GTAC | 1 cut(s) | 127 |
| AflIII | ACRYGT | 1 cut(s) | 367 |
| AgsI | TTSAA | 1 cut(s) | 383 |
| AhlI | ACTAGT | 1 cut(s) | 455 |
| AjnI | CCWGG | 1 cut(s) | 25 |
| AluBI | AGCT | 3 cut(s) | 188, 350, 492 |
| AluI | AGCT | 3 cut(s) | 188, 350, 492 |
| AlwI | GGATC | 1 cut(s) | 22 |
| Ama87I | CYCGRG | 1 cut(s) | 375 |
| AoxI | GGCC | 2 cut(s) | 73, 410 |
| ApeKI | GCWGC | 2 cut(s) | 97, 347 |
| ApoI | RAATTY | 1 cut(s) | 223 |
| AspS9I | GGNCC | 3 cut(s) | 326, 410, 446 |
| AsuC2I | CCSGG | 2 cut(s) | 376, 377 |
| AsuHPI | GGTGA | 2 cut(s) | 307, 349 |
| AvaI | CYCGRG | 1 cut(s) | 375 |
| AvaII | GGWCC | 2 cut(s) | 326, 446 |
| BbvCI | CCTCAGC | 1 cut(s) | 36 |
| BbvI | GCAGC | 2 cut(s) | 109, 359 |
| BccI | CCATC | 6 cut(s) | 5, 174, 254, 437, 467, 471 |
| BceAI | ACGGC | 1 cut(s) | 60 |
| BciT130I | CCWGG | 1 cut(s) | 27 |
| BcnI | CCSGG | 2 cut(s) | 376, 377 |
| BcuI | ACTAGT | 1 cut(s) | 455 |
| BfaI | CTAG | 2 cut(s) | 330, 456 |
| BfmI | CTRYAG | 1 cut(s) | 129 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 418 |
| BisI | GCNGC | 2 cut(s) | 98, 348 |
| BlsI | GCNGC | 2 cut(s) | 99, 349 |
| Bme1390I | CCNGG | 3 cut(s) | 27, 376, 377 |
| Bme18I | GGWCC | 2 cut(s) | 326, 446 |
| BmeT110I | CYCGRG | 1 cut(s) | 375 |
| BmgT120I | GGNCC | 3 cut(s) | 326, 410, 446 |
| BmiI | GGNNCC | 1 cut(s) | 448 |
| BmrFI | CCNGG | 3 cut(s) | 27, 376, 377 |
| BpmI | CTGGAG | 1 cut(s) | 233 |
| Bpu10I | CCTNAGC | 1 cut(s) | 36 |
| BpuMI | CCSGG | 2 cut(s) | 376, 377 |
| BsaJI | CCNNGG | 2 cut(s) | 375, 416 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 230, 260 |
| Bse1I | ACTGG | 1 cut(s) | 510 |
| BseBI | CCWGG | 1 cut(s) | 27 |
| BseDI | CCNNGG | 2 cut(s) | 375, 416 |
| BseGI | GGATG | 4 cut(s) | 185, 265, 478, 482 |
| BseMII | CTCAG | 1 cut(s) | 27 |
| BseNI | ACTGG | 1 cut(s) | 510 |
| BseXI | GCAGC | 2 cut(s) | 109, 359 |
| BshFI | GGCC | 2 cut(s) | 75, 412 |
| BsiHKCI | CYCGRG | 1 cut(s) | 375 |
| BsiSI | CCGG | 1 cut(s) | 376 |
| BslFI | GGGAC | 1 cut(s) | 432 |
| BsmFI | GGGAC | 1 cut(s) | 432 |
| BsnI | GGCC | 2 cut(s) | 75, 412 |
| BsoBI | CYCGRG | 1 cut(s) | 375 |
| Bsp143I | GATC | 1 cut(s) | 14 |
| BspACI | CCGC | 2 cut(s) | 89, 388 |
| BspANI | GGCC | 2 cut(s) | 75, 412 |
| BspCNI | CTCAG | 1 cut(s) | 28 |
| BspLI | GGNNCC | 1 cut(s) | 448 |
| BspMAI | CTGCAG | 1 cut(s) | 133 |
| BspPI | GGATC | 1 cut(s) | 22 |
| BsrI | ACTGG | 1 cut(s) | 510 |
| BssECI | CCNNGG | 2 cut(s) | 375, 416 |
| BssMI | GATC | 1 cut(s) | 14 |
| BssT1I | CCWWGG | 1 cut(s) | 416 |
| Bst2UI | CCWGG | 1 cut(s) | 27 |
| Bst6I | CTCTTC | 1 cut(s) | 237 |
| BstDEI | CTNAG | 2 cut(s) | 36, 234 |
| BstF5I | GGATG | 4 cut(s) | 185, 265, 478, 482 |
| BstKTI | GATC | 1 cut(s) | 17 |
| BstMBI | GATC | 1 cut(s) | 14 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 418 |
| BstNI | CCWGG | 1 cut(s) | 27 |
| BstNSI | RCATGY | 3 cut(s) | 253, 311, 371 |
| BstSCI | CCNGG | 3 cut(s) | 25, 374, 375 |
| BstSFI | CTRYAG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 2 cut(s) | 109, 359 |
| BsuRI | GGCC | 2 cut(s) | 75, 412 |
| BtsCI | GGATG | 4 cut(s) | 185, 265, 478, 482 |
| BtsIMutI | CAGTG | 2 cut(s) | 24, 517 |
| Cfr13I | GGNCC | 3 cut(s) | 326, 410, 446 |
| Cfr9I | CCCGGG | 1 cut(s) | 375 |
| Csp6I | GTAC | 1 cut(s) | 126 |
| CviAII | CATG | 5 cut(s) | 250, 273, 308, 368, 424 |
| CviJI | RGCY | 9 cut(s) | 35, 53, 75, 188, 350, 374, 412, 421, 492 |
| CviKI_1 | RGCY | 9 cut(s) | 35, 53, 75, 188, 350, 374, 412, 421, 492 |
| CviQI | GTAC | 1 cut(s) | 126 |
| DdeI | CTNAG | 2 cut(s) | 36, 234 |
| DpnI | GATC | 1 cut(s) | 16 |
| DpnII | GATC | 1 cut(s) | 14 |
| Eam1104I | CTCTTC | 1 cut(s) | 237 |
| EarI | CTCTTC | 1 cut(s) | 237 |
| Eco130I | CCWWGG | 1 cut(s) | 416 |
| Eco47I | GGWCC | 2 cut(s) | 326, 446 |
| Eco88I | CYCGRG | 1 cut(s) | 375 |
| EcoRII | CCWGG | 1 cut(s) | 25 |
| EcoT14I | CCWWGG | 1 cut(s) | 416 |
| ErhI | CCWWGG | 1 cut(s) | 416 |
| FaeI | CATG | 5 cut(s) | 253, 276, 311, 371, 427 |
| FaiI | YATR | 8 cut(s) | 251, 274, 309, 354, 356, 369, 425, 452 |
| FaqI | GGGAC | 1 cut(s) | 432 |
| FatI | CATG | 5 cut(s) | 249, 272, 307, 367, 423 |
| FauNDI | CATATG | 1 cut(s) | 354 |
| Fnu4HI | GCNGC | 2 cut(s) | 98, 348 |
| FokI | GGATG | 4 cut(s) | 192, 272, 485, 489 |
| Fsp4HI | GCNGC | 2 cut(s) | 98, 348 |
| FspBI | CTAG | 2 cut(s) | 330, 456 |
| GluI | GCNGC | 2 cut(s) | 98, 348 |
| GsuI | CTGGAG | 1 cut(s) | 233 |
| HaeIII | GGCC | 2 cut(s) | 75, 412 |
| HapII | CCGG | 1 cut(s) | 376 |
| Hin1II | CATG | 5 cut(s) | 253, 276, 311, 371, 427 |
| HinfI | GANTC | 1 cut(s) | 300 |
| HpaII | CCGG | 1 cut(s) | 376 |
| HphI | GGTGA | 2 cut(s) | 307, 349 |
| Hpy188I | TCNGA | 2 cut(s) | 62, 256 |
| Hpy188III | TCNNGA | 1 cut(s) | 212 |
| Hpy99I | CGWCG | 1 cut(s) | 440 |
| HpyAV | CCTTC | 4 cut(s) | 24, 169, 377, 462 |
| HpyCH4V | TGCA | 6 cut(s) | 131, 143, 249, 272, 311, 427 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 418 |
| HpyF3I | CTNAG | 2 cut(s) | 36, 234 |
| Hsp92II | CATG | 5 cut(s) | 253, 276, 311, 371, 427 |
| Kzo9I | GATC | 1 cut(s) | 14 |
| LpnPI | CCDG | 6 cut(s) | 12, 39, 57, 176, 197, 389 |
| Lsp1109I | GCAGC | 2 cut(s) | 109, 359 |
| MaeI | CTAG | 2 cut(s) | 330, 456 |
| MalI | GATC | 1 cut(s) | 16 |
| MboI | GATC | 1 cut(s) | 14 |
| MboII | GAAGA | 1 cut(s) | 254 |
| MluCI | AATT | 3 cut(s) | 4, 144, 223 |
| MmeI | TCCRAC | 1 cut(s) | 328 |
| MnlI | CCTC | 7 cut(s) | 31, 129, 208, 232, 250, 328, 423 |
| MseI | TTAA | 2 cut(s) | 111, 147 |
| MspI | CCGG | 1 cut(s) | 376 |
| MspR9I | CCNGG | 3 cut(s) | 27, 376, 377 |
| MvaI | CCWGG | 1 cut(s) | 27 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 418 |
| NciI | CCSGG | 2 cut(s) | 376, 377 |
| NdeI | CATATG | 1 cut(s) | 354 |
| NdeII | GATC | 1 cut(s) | 14 |
| NlaIII | CATG | 5 cut(s) | 253, 276, 311, 371, 427 |
| NlaIV | GGNNCC | 1 cut(s) | 448 |
| NspI | RCATGY | 3 cut(s) | 253, 311, 371 |
| PciI | ACATGT | 1 cut(s) | 367 |
| PfeI | GAWTC | 1 cut(s) | 300 |
| PfoI | TCCNGGA | 1 cut(s) | 25 |
| PkrI | GCNGC | 2 cut(s) | 99, 349 |
| PscI | ACATGT | 1 cut(s) | 367 |
| Psp6I | CCWGG | 1 cut(s) | 25 |
| PspGI | CCWGG | 1 cut(s) | 25 |
| PspN4I | GGNNCC | 1 cut(s) | 448 |
| PspPI | GGNCC | 3 cut(s) | 326, 410, 446 |
| PstI | CTGCAG | 1 cut(s) | 133 |
| RsaI | GTAC | 1 cut(s) | 127 |
| RsaNI | GTAC | 1 cut(s) | 126 |
| SaqAI | TTAA | 2 cut(s) | 111, 147 |
| SatI | GCNGC | 2 cut(s) | 98, 348 |
| Sau3AI | GATC | 1 cut(s) | 14 |
| Sau96I | GGNCC | 3 cut(s) | 326, 410, 446 |
| ScrFI | CCNGG | 3 cut(s) | 27, 376, 377 |
| SetI | ASST | 7 cut(s) | 42, 190, 219, 290, 339, 352, 494 |
| SfcI | CTRYAG | 1 cut(s) | 129 |
| SinI | GGWCC | 2 cut(s) | 326, 446 |
| SmaI | CCCGGG | 1 cut(s) | 377 |
| SpeI | ACTAGT | 1 cut(s) | 455 |
| Sse9I | AATT | 3 cut(s) | 4, 144, 223 |
| SsiI | CCGC | 2 cut(s) | 89, 388 |
| SspMI | CTAG | 2 cut(s) | 330, 456 |
| StyD4I | CCNGG | 3 cut(s) | 25, 374, 375 |
| StyI | CCWWGG | 1 cut(s) | 416 |
| TaqI | TCGA | 1 cut(s) | 435 |
| TasI | AATT | 3 cut(s) | 4, 144, 223 |
| TfiI | GAWTC | 1 cut(s) | 300 |
| Tru1I | TTAA | 2 cut(s) | 111, 147 |
| Tru9I | TTAA | 2 cut(s) | 111, 147 |
| TscAI | CASTG | 2 cut(s) | 24, 517 |
| TseI | GCWGC | 2 cut(s) | 97, 347 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspMI | CCCGGG | 1 cut(s) | 375 |
| TspRI | CASTG | 2 cut(s) | 24, 517 |
| VpaK11BI | GGWCC | 2 cut(s) | 326, 446 |
| XapI | RAATTY | 1 cut(s) | 223 |
| XceI | RCATGY | 3 cut(s) | 253, 311, 371 |
| XmaI | CCCGGG | 1 cut(s) | 375 |
| XspI | CTAG | 2 cut(s) | 330, 456 |