Rorug01G0071700

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000072
Physical Location & Seq
Forward (+)
11675740 .. 11678322
2583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0071700.1

Sequence Viewer

Length: 2583 bp
ATGAAACCAATTCTAGCCCATCCTCTCTACCTTCCCTTCTTTCTACACATCGTAACCCTACTCCTGGCTGGATCGTCATCAACGCCTAGCTACACTCCGATCGATGACATCACCCTTGCTTGTGGCTTTTCCGGCAACCAACCCACTACTAATTATAACCTTCGAAATTGGACCGGAGATATAAACTCAAAATTCTCCCCCACACAAGTTGATCACACAAACACCCACTCTGAAGTCAGAAAAGCTCCGTTTGCAGGCCAAGTACCATTCAACGCAGCACGGCTTTCTCACTCGGCATTCACTTATAGGTTTCCCCTCTCTCCCGGCCAAAAGTTTATCCGCTTGCACTTCAACCCAGCTTCATACCCAGACTTCGACCGCTCCAAATCCCATTTCTCTGTGAAAGCTGGTGGTTTCACTCTTCTCAAAGACTTCAACGCTTTTGCCAGTGCAAAAAATGATTTCATGGATACGTTCATTAGAGAATTCTGCATCAACATAGACTCGCACCAGCAGAGTCTAAACATCACATTCTCGCCAACAAGAGAAATCCCAGATGCCTACGCATTCATCAACGGAATCGAAATCGTGTCCATGCCAGTCAATCTATACTACACCGCAGCCGAAAGCCAAGGGATTCGGTATACAGGCAGCCAACTAAACTATTACATTGAAAACAGCACAGCTCTGGAAATGATGTATCGAATCAACATCGGAGGAAATTTGGTCTCACCAGAAGGAGACACCGGCATGTACCGCAGCTGGGATGCAACGGACGGTCTCTACTTAGATGATGTGAGTAGAAGATTAAGCATTATACATACAAGTAGGGTTCAACTGAGTTTTGATGAAACTCCTGAATACACAGCTCCAAAAGAAGTTTACATTACGGGTCGGTCAATGGGCCCAAACAAAACCGTAACACTGAGCTACGATCTCACCTGGTCTTTTCCTGTACATCCCGAGTTTTTTTATCTGGTAAGGCTCCATTTTTGTGAGTTTGAAGAAATGATGACAGACCCCGGAGACCGGGTGTTCTTCATCTACCTAGCCAATCAAACGGTTGAGAAACAATTGGACATAATCCAGTGGAGTGGTGGCAATGGGGTTCCGGTGTACAGAGACTATATTGTATACATGCCCGGCCAAGGAAGCAGGAAGTCAGTTAATCTCTTTCTCGCACTGCAAGCAAACCCAAATGAATGGGAGACTAAATACAGTGATGCAATCTTGAATGGGCTCGAAATCTTCAAACTCAATGACACAAACGGCAATCTCGCCGGACCCAATCCCGACCCACCACCGCCGGAGGAAAAACCAAATGTGAAACAGGAAAGCTCTAGAAAACCGAAGAAGAAGTCGATTCCTATGCTTGCTATCCTTGTCGGTGTAGTTTCGGTCTTACTTGTTCTTTCCCTAGTCGGGATTTTAGTTTTCGAGCGTGGAAGAAAACTCAAGTACTCCAGCTCCAACCCCAGGATGACGAGGTCAACCACGAACCTTGAGTCAACTTTCCCATCTTATTTATGTCGTTACTTTTCATTGGCAGAGATCAAATCCGCCACCAAAAACTTCGATGACACTCTTATCGTTGGAATTGGTGGGTTTGGCCACGTGTACAAAGGACACTTTGATGATGGGGCCACCCTTGTTGCAATCAAACGGCTCAAAGCCACTTCATTGCAGGGCACCCTTGAGTTCATGACAGAAATCAAGATGCTCTCTCGACTCCGCCACCGCCATTTGGTGTCTTTGATCGGATATTGTGCCGATCAAGGTGAGATGGTCTTAGTGTACGATTACATGGCACGTGGGACCCTTAGTGATCATTTGCACCACACTGAGAAACCGCATCTTTCTTGGGAACAACGACTTCAGATTTGTATCGGTGCGGCGCAAGGTCTGCACTACCTTCATACAGGTACCAAAGGCACCATCATTCACCGTGACGTAAAGAGCGCAAACATATTAATAGACGAGAAATGGGTGGCCAAGATTTCAGATTTTGGGTTGTCAAAAATGGGCAATATCACAATGTCTAAAACCCACATTAGCACGAAGGTGAAAGGTAGTTTCGGATATCTTGACCCTGATTATTACCGGCGCCAACAATTGACTGAGAAGTCTGACGTGTACTCATTTGGCGTAGTGTTATGCGAAGTATTGTGTGGGAGGCCAGCTGTGACCATCGTGGATAATAATCGAGTTGGCCTGGCTGGATGGGTTAAAAAGTGTCATCGCGACGGGAAACTTGATCAGATTGTTGACCCAAATTTGAAGAGTGAAATTGCAGTCCGATGCTTGCATAAATTTGCTTCCATTGCAATGAGTTGCATGGATGATAATGGGATCAATCGGCCGTCAATGGATGATGTTGTGGGAGGGCTTCAGTTTGCATTGCAGATGCAGGAAAAGAATGAGGATTATATTGATCACATTGAAAGGACGGTTCAAGATGAGATTTCATTGATCAAGGACAATGAAGGGTCTTGTTCTAGTGAGCAAACCAGTGGGGCGAACGAATCCGTTCAAGAGTTGACCAGGACAATTTTCTCCGAGATTATTGATCCGGTTGGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

860

Amino Acids

96.68

Weight (kDa)

6.44

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 40 - 418 1.3e-26 Malectin-like domain
Malectin PF11721 234 - 377 3.1e-09 Malectin domain
Pkinase PF00069 530 - 792 1e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 531 - 793 2.6e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AasI GACNNNNNNGTC 1 cut(s) 2122
Acc65I GGTACC 1 cut(s) 1922
AccB1I GGYRCC 4 cut(s) 1688, 1922, 1931, 2103
AccBSI CCGCTC 1 cut(s) 381
AccI GTMKAC 2 cut(s) 644, 1134
AccII CGCG 1 cut(s) 2241
AclWI GGATC 3 cut(s) 79, 2357, 2561
AcoI YGGCCR 5 cut(s) 325, 1144, 1609, 1989, 2357
AcsI RAATTY 5 cut(s) 191, 485, 721, 2272, 2309
AcuI CTGAAG 3 cut(s) 252, 1859, 2372
AcvI CACGTG 2 cut(s) 1615, 1811
AcyI GRCGYC 1 cut(s) 2104
AfaI GTAC 9 cut(s) 264, 755, 957, 1118, 1460, 1619, 1796, 1924, 2135
AfiI CCNNNNNNNGG 8 cut(s) 64, 254, 763, 1029, 1148, 1422, 1476, 1744
AflIII ACRYGT 2 cut(s) 1614, 2130
AjiI CACGTC 1 cut(s) 2131
AjnI CCWGG 5 cut(s) 63, 941, 1475, 2211, 2540
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AleI CACNNNNGTG 1 cut(s) 2060
Alw26I GTCTC 6 cut(s) 733, 735, 785, 1020, 1116, 1202
AlwI GGATC 3 cut(s) 79, 2357, 2561
Ama87I CYCGRG 1 cut(s) 962
ApaI GGGCCC 1 cut(s) 908
ApeKI GCWGC 4 cut(s) 275, 620, 651, 759
ApoI RAATTY 5 cut(s) 191, 485, 721, 2272, 2309
ArsI GACNNNNNNTTYG 6 cut(s) 1343, 1375, 1490, 1522, 1863, 1895
AseI ATTAAT 1 cut(s) 1970
Asp700I GAANNNNTTC 1 cut(s) 2526
Asp718I GGTACC 1 cut(s) 1922
AspLEI GCGC 3 cut(s) 1897, 1961, 2106
AspS9I GGNCC 6 cut(s) 171, 904, 905, 1283, 1641, 1815
AsuC2I CCSGG 4 cut(s) 324, 1023, 1031, 1143
AsuHPI GGTGA 6 cut(s) 103, 723, 931, 1790, 1934, 2074
AsuII TTCGAA 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 962
AvaII GGWCC 3 cut(s) 171, 1283, 1815
BaeGI GKGCMC 2 cut(s) 908, 1691
BalI TGGCCA 2 cut(s) 1611, 1991
BanI GGYRCC 4 cut(s) 1688, 1922, 1931, 2103
BanII GRGCYC 2 cut(s) 908, 1242
BbrPI CACGTG 2 cut(s) 1615, 1811
BbvI GCAGC 4 cut(s) 287, 632, 663, 771
BccI CCATC 7 cut(s) 27, 1525, 1631, 1777, 1943, 2195, 2214
BceAI ACGGC 4 cut(s) 296, 1285, 1679, 2344
BcgI CGANNNNNNTGC 2 cut(s) 1351, 1385
BciT130I CCWGG 5 cut(s) 65, 943, 1477, 2213, 2542
BciVI GTATCC 1 cut(s) 463
BclI TGATCA 5 cut(s) 211, 1825, 2254, 2431, 2469
BcnI CCSGG 4 cut(s) 324, 1023, 1031, 1143
BcoDI GTCTC 6 cut(s) 733, 735, 785, 1020, 1116, 1202
BfaI CTAG 6 cut(s) 14, 87, 1049, 1341, 1418, 2496
BfoI RGCGCY 1 cut(s) 2107
BfuI GTATCC 1 cut(s) 463
BisI GCNGC 5 cut(s) 276, 621, 652, 760, 1893
BlsI GCNGC 5 cut(s) 277, 622, 653, 761, 1894
BmcAI AGTACT 1 cut(s) 1460
Bme1390I CCNGG 9 cut(s) 65, 324, 943, 1023, 1031, 1143, 1477, 2213, 2542
Bme18I GGWCC 3 cut(s) 171, 1283, 1815
BmeT110I CYCGRG 1 cut(s) 962
BmgBI CACGTC 1 cut(s) 2131
BmgT120I GGNCC 6 cut(s) 171, 904, 905, 1283, 1641, 1815
BmrFI CCNGG 9 cut(s) 65, 324, 943, 1023, 1031, 1143, 1477, 2213, 2542
BmsI GCATC 8 cut(s) 501, 547, 757, 1213, 1707, 1861, 2288, 2394
BpmI CTGGAG 1 cut(s) 1447
Bpu14I TTCGAA 1 cut(s) 163
BpuEI CTTGAG 3 cut(s) 1439, 1523, 1715
BpuMI CCSGG 4 cut(s) 324, 1023, 1031, 1143
Bsa29I ATCGAT 1 cut(s) 102
BsaAI YACGTR 2 cut(s) 1615, 1811
BsaBI GATNNNNATC 3 cut(s) 76, 1883, 2199
BsaHI GRCGYC 1 cut(s) 2104
BsaI GGTCTC 3 cut(s) 733, 785, 1020
BsaJI CCNNGG 4 cut(s) 631, 1021, 1147, 1475
BsaWI WCCGGW 3 cut(s) 173, 1111, 2569
BsaXI ACNNNNNCTCC 4 cut(s) 1017, 1047, 1451, 1481
Bsc4I CCNNNNNNNGG 8 cut(s) 64, 254, 763, 1029, 1148, 1422, 1476, 1744
Bse118I RCCGGY 2 cut(s) 746, 2100
Bse1I ACTGG 4 cut(s) 447, 599, 1087, 2508
Bse3DI GCAATG 5 cut(s) 1108, 1679, 2319, 2331, 2396
Bse8I GATNNNNATC 3 cut(s) 76, 1883, 2199
BseBI CCWGG 5 cut(s) 65, 943, 1477, 2213, 2542
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 4 cut(s) 631, 1021, 1147, 1475
BseGI GGATG 7 cut(s) 19, 772, 958, 1485, 2225, 2344, 2374
BseJI GATNNNNATC 3 cut(s) 76, 1883, 2199
BseLI CCNNNNNNNGG 8 cut(s) 64, 254, 763, 1029, 1148, 1422, 1476, 1744
BseMI GCAATG 5 cut(s) 1108, 1679, 2319, 2331, 2396
BseMII CTCAG 4 cut(s) 830, 917, 1833, 2109
BseNI ACTGG 4 cut(s) 447, 599, 1087, 2508
BseSI GKGCMC 2 cut(s) 908, 1691
BseX3I CGGCCG 1 cut(s) 2357
BseXI GCAGC 4 cut(s) 287, 632, 663, 771
BseYI CCCAGC 2 cut(s) 355, 762
BsgI GTGCAG 1 cut(s) 1889
Bsh1236I CGCG 1 cut(s) 2241
Bsh1285I CGRYCG 3 cut(s) 102, 379, 2360
BshNI GGYRCC 4 cut(s) 1688, 1922, 1931, 2103
BshVI ATCGAT 1 cut(s) 102
BsiEI CGRYCG 3 cut(s) 102, 379, 2360
BsiHKCI CYCGRG 1 cut(s) 962
BslFI GGGAC 1 cut(s) 1828
BslI CCNNNNNNNGG 8 cut(s) 64, 254, 763, 1029, 1148, 1422, 1476, 1744
BsmAI GTCTC 6 cut(s) 733, 735, 785, 1020, 1116, 1202
BsmFI GGGAC 1 cut(s) 1828
BsmI GAATGC 2 cut(s) 296, 566
Bso31I GGTCTC 3 cut(s) 733, 785, 1020
BsoBI CYCGRG 1 cut(s) 962
Bsp119I TTCGAA 1 cut(s) 163
Bsp120I GGGCCC 1 cut(s) 904
Bsp1286I GDGCHC 3 cut(s) 908, 1242, 1691
Bsp1407I TGTACA 3 cut(s) 955, 1116, 1617
Bsp68I TCGCGA 1 cut(s) 2241
BspCNI CTCAG 4 cut(s) 831, 918, 1834, 2110
BspDI ATCGAT 1 cut(s) 102
BspFNI CGCG 1 cut(s) 2241
BspHI TCATGA 1 cut(s) 1701
BspPI GGATC 3 cut(s) 79, 2357, 2561
BspT104I TTCGAA 1 cut(s) 163
BspT107I GGYRCC 4 cut(s) 1688, 1922, 1931, 2103
BspTNI GGTCTC 3 cut(s) 733, 785, 1020
BsrBI CCGCTC 1 cut(s) 381
BsrDI GCAATG 5 cut(s) 1108, 1679, 2319, 2331, 2396
BsrFI RCCGGY 2 cut(s) 746, 2100
BsrGI TGTACA 3 cut(s) 955, 1116, 1617
BsrI ACTGG 4 cut(s) 447, 599, 1087, 2508
BssAI RCCGGY 2 cut(s) 746, 2100
BssECI CCNNGG 4 cut(s) 631, 1021, 1147, 1475
BssNAI GTATAC 2 cut(s) 645, 1135
BssNI GRCGYC 1 cut(s) 2104
BssT1I CCWWGG 2 cut(s) 631, 1147
Bst1107I GTATAC 2 cut(s) 645, 1135
Bst2UI CCWGG 5 cut(s) 65, 943, 1477, 2213, 2542
Bst4CI ACNGT 6 cut(s) 779, 919, 1063, 1220, 1946, 2449
Bst6I CTCTTC 2 cut(s) 426, 2273
BstACI GRCGYC 1 cut(s) 2104
BstAPI GCANNNNNTGC 1 cut(s) 1903
BstAUI TGTACA 3 cut(s) 955, 1116, 1617
BstBAI YACGTR 2 cut(s) 1615, 1811
BstBI TTCGAA 1 cut(s) 163
BstC8I GCNNGC 6 cut(s) 256, 344, 1188, 1374, 2178, 2303
BstDEI CTNAG 7 cut(s) 787, 839, 926, 1789, 1820, 1842, 2118
BstF5I GGATG 7 cut(s) 19, 772, 958, 1485, 2225, 2344, 2374
BstFNI CGCG 1 cut(s) 2241
BstH2I RGCGCY 1 cut(s) 2107
BstHHI GCGC 3 cut(s) 1897, 1961, 2106
BstMAI GTCTC 6 cut(s) 733, 735, 785, 1020, 1116, 1202
BstMCI CGRYCG 3 cut(s) 102, 379, 2360
BstMWI GCNNNNNNNGC 7 cut(s) 132, 251, 756, 1152, 1187, 1903, 2321
BstNI CCWGG 5 cut(s) 65, 943, 1477, 2213, 2542
BstNSI RCATGY 2 cut(s) 754, 1141
BstSCI CCNGG 9 cut(s) 63, 322, 941, 1021, 1029, 1141, 1475, 2211, 2540
BstSLI GKGCMC 2 cut(s) 908, 1691
BstUI CGCG 1 cut(s) 2241
BstV1I GCAGC 4 cut(s) 287, 632, 663, 771
BstXI CCANNNNNNTGG 2 cut(s) 1094, 1203
BstZ17I GTATAC 2 cut(s) 645, 1135
BstZI CGGCCG 1 cut(s) 2357
Bsu15I ATCGAT 1 cut(s) 102
BsuI GTATCC 1 cut(s) 463
BsuTUI ATCGAT 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 2222
BtrI CACGTC 1 cut(s) 2131
BtsCI GGATG 7 cut(s) 19, 772, 958, 1485, 2225, 2344, 2374
BtsI GCAGTG 1 cut(s) 1181
BtsIMutI CAGTG 7 cut(s) 454, 923, 1094, 1181, 1225, 1839, 2515
BtuMI TCGCGA 1 cut(s) 2241
Cac8I GCNNGC 6 cut(s) 256, 344, 1188, 1374, 2178, 2303
CciI TCATGA 1 cut(s) 1701
CfoI GCGC 3 cut(s) 1897, 1961, 2106
Cfr10I RCCGGY 2 cut(s) 746, 2100
Cfr13I GGNCC 6 cut(s) 171, 904, 905, 1283, 1641, 1815
ClaI ATCGAT 1 cut(s) 102
CsiI ACCWGGT 1 cut(s) 941
Csp6I GTAC 9 cut(s) 263, 754, 956, 1117, 1459, 1618, 1795, 1923, 2134
CspCI CAANNNNNGTGG 6 cut(s) 190, 225, 1483, 1518, 1633, 1668
CviAII CATG 7 cut(s) 466, 595, 751, 1138, 1702, 1804, 2335
CviQI GTAC 9 cut(s) 263, 754, 956, 1117, 1459, 1618, 1795, 1923, 2134
DdeI CTNAG 7 cut(s) 787, 839, 926, 1789, 1820, 1842, 2118
DinI GGCGCC 1 cut(s) 2105
DrdI GACNNNNNNGTC 1 cut(s) 2122
DseDI GACNNNNNNGTC 1 cut(s) 2122
EaeI YGGCCR 5 cut(s) 325, 1144, 1609, 1989, 2357
EagI CGGCCG 1 cut(s) 2357
Eam1104I CTCTTC 2 cut(s) 426, 2273
EarI CTCTTC 2 cut(s) 426, 2273
EciI GGCGGA 2 cut(s) 1549, 1721
EclXI CGGCCG 1 cut(s) 2357
Eco130I CCWWGG 2 cut(s) 631, 1147
Eco24I GRGCYC 2 cut(s) 908, 1242
Eco31I GGTCTC 3 cut(s) 733, 785, 1020
Eco32I GATATC 1 cut(s) 2081
Eco47I GGWCC 3 cut(s) 171, 1283, 1815
Eco52I CGGCCG 1 cut(s) 2357
Eco57I CTGAAG 3 cut(s) 252, 1859, 2372
Eco72I CACGTG 2 cut(s) 1615, 1811
Eco88I CYCGRG 1 cut(s) 962
EcoO109I RGGNCCY 1 cut(s) 1815
EcoRI GAATTC 1 cut(s) 485
EcoRII CCWGG 5 cut(s) 63, 941, 1475, 2211, 2540
EcoRV GATATC 1 cut(s) 2081
EcoT14I CCWWGG 2 cut(s) 631, 1147
EcoT38I GRGCYC 2 cut(s) 908, 1242
EgeI GGCGCC 1 cut(s) 2105
EheI GGCGCC 1 cut(s) 2105
ErhI CCWWGG 2 cut(s) 631, 1147
FaeI CATG 7 cut(s) 469, 598, 754, 1141, 1705, 1807, 2338
FaqI GGGAC 1 cut(s) 1828
FatI CATG 7 cut(s) 465, 594, 750, 1137, 1701, 1803, 2334
FbaI TGATCA 5 cut(s) 211, 1825, 2254, 2431, 2469
FblI GTMKAC 2 cut(s) 644, 1134
Fnu4HI GCNGC 5 cut(s) 276, 621, 652, 760, 1893
FokI GGATG 7 cut(s) 6, 779, 945, 1492, 2232, 2351, 2381
FriOI GRGCYC 2 cut(s) 908, 1242
Fsp4HI GCNGC 5 cut(s) 276, 621, 652, 760, 1893
FspBI CTAG 6 cut(s) 14, 87, 1049, 1341, 1418, 2496
GlaI GCGC 3 cut(s) 1896, 1960, 2105
GluI GCNGC 5 cut(s) 276, 621, 652, 760, 1893
GsaI CCCAGC 2 cut(s) 359, 766
GsuI CTGGAG 1 cut(s) 1447
HaeII RGCGCY 1 cut(s) 2107
HhaI GCGC 3 cut(s) 1897, 1961, 2106
Hin1I GRCGYC 1 cut(s) 2104
Hin1II CATG 7 cut(s) 469, 598, 754, 1141, 1705, 1807, 2338
Hin6I GCGC 3 cut(s) 1895, 1959, 2104
HinP1I GCGC 3 cut(s) 1895, 1959, 2104
HincII GTYRAC 4 cut(s) 1491, 1509, 2266, 2538
HindII GTYRAC 4 cut(s) 1491, 1509, 2266, 2538
HinfI GANTC 9 cut(s) 503, 517, 579, 637, 705, 1363, 1505, 1728, 2522
HphI GGTGA 6 cut(s) 103, 723, 931, 1790, 1934, 2074
Hpy99I CGWCG 1 cut(s) 2246
HpyAV CCTTC 7 cut(s) 41, 46, 170, 731, 1922, 2053, 2477
HpyCH4III ACNGT 6 cut(s) 779, 919, 1063, 1220, 1946, 2449
HpyCH4IV ACGT 5 cut(s) 473, 1614, 1810, 1950, 2130
HpyF10VI GCNNNNNNNGC 7 cut(s) 132, 251, 756, 1152, 1187, 1903, 2321
HpyF3I CTNAG 7 cut(s) 787, 839, 926, 1789, 1820, 1842, 2118
HpySE526I ACGT 5 cut(s) 473, 1614, 1810, 1950, 2130
Hsp92I GRCGYC 1 cut(s) 2104
Hsp92II CATG 7 cut(s) 469, 598, 754, 1141, 1705, 1807, 2338
HspAI GCGC 3 cut(s) 1895, 1959, 2104
KasI GGCGCC 1 cut(s) 2103
KflI GGGWCCC 1 cut(s) 1815
KpnI GGTACC 1 cut(s) 1926
Ksp22I TGATCA 5 cut(s) 211, 1825, 2254, 2431, 2469
LmnI GCTCC 5 cut(s) 250, 386, 874, 990, 1472
Lsp1109I GCAGC 4 cut(s) 287, 632, 663, 771
LweI GCATC 8 cut(s) 501, 547, 757, 1213, 1707, 1861, 2288, 2394
MabI ACCWGGT 1 cut(s) 941
MaeI CTAG 6 cut(s) 14, 87, 1049, 1341, 1418, 2496
MaeII ACGT 5 cut(s) 473, 1614, 1810, 1950, 2130
MaeIII GTNAC 5 cut(s) 52, 919, 1532, 1946, 2182
MbiI CCGCTC 1 cut(s) 381
MboII GAAGA 9 cut(s) 413, 816, 1016, 1030, 1240, 1363, 1366, 1458, 2290
MfeI CAATTG 2 cut(s) 1073, 2111
MhlI GDGCHC 3 cut(s) 908, 1242, 1691
MlsI TGGCCA 2 cut(s) 1611, 1991
MluNI TGGCCA 2 cut(s) 1611, 1991
Mly113I GGCGCC 1 cut(s) 2104
MlyI GAGTC 4 cut(s) 497, 526, 1514, 1722
MmeI TCCRAC 3 cut(s) 1494, 1573, 2554
MnlI CCTC 8 cut(s) 33, 326, 710, 1303, 1479, 2166, 2375, 2413
Mox20I TGGCCA 2 cut(s) 1611, 1991
MroXI GAANNNNTTC 1 cut(s) 2526
MscI TGGCCA 2 cut(s) 1611, 1991
MseI TTAA 4 cut(s) 809, 1167, 1970, 2226
MslI CAYNNNNRTG 5 cut(s) 749, 993, 1632, 2060, 2324
Msp20I TGGCCA 2 cut(s) 1611, 1991
MspA1I CMGCKG 2 cut(s) 762, 2180
MspR9I CCNGG 9 cut(s) 65, 324, 943, 1023, 1031, 1143, 1477, 2213, 2542
MunI CAATTG 2 cut(s) 1073, 2111
Mva1269I GAATGC 2 cut(s) 296, 566
MvaI CCWGG 5 cut(s) 65, 943, 1477, 2213, 2542
MvnI CGCG 1 cut(s) 2241
MwoI GCNNNNNNNGC 7 cut(s) 132, 251, 756, 1152, 1187, 1903, 2321
NarI GGCGCC 1 cut(s) 2104
NciI CCSGG 4 cut(s) 324, 1023, 1031, 1143
NlaIII CATG 7 cut(s) 469, 598, 754, 1141, 1705, 1807, 2338
NmeAIII GCCGAG 1 cut(s) 272
NmuCI GTSAC 2 cut(s) 1946, 2182
NruI TCGCGA 1 cut(s) 2241
NspI RCATGY 2 cut(s) 754, 1141
NspV TTCGAA 1 cut(s) 163
OliI CACNNNNGTG 1 cut(s) 2060
PagI TCATGA 1 cut(s) 1701
PctI GAATGC 2 cut(s) 296, 566
PdmI GAANNNNTTC 1 cut(s) 2526
PfeI GAWTC 5 cut(s) 579, 637, 705, 1363, 2522
PflFI GACNNNGTC 1 cut(s) 1486
PkrI GCNGC 5 cut(s) 277, 622, 653, 761, 1894
Ple19I CGATCG 1 cut(s) 102
PleI GAGTC 4 cut(s) 497, 525, 1513, 1722
PluTI GGCGCC 1 cut(s) 2107
PmaCI CACGTG 2 cut(s) 1615, 1811
PmlI CACGTG 2 cut(s) 1615, 1811
PpsI GAGTC 4 cut(s) 497, 525, 1513, 1722
Ppu21I YACGTR 2 cut(s) 1615, 1811
PpuMI RGGWCCY 1 cut(s) 1815
PshBI ATTAAT 1 cut(s) 1970
PsiI TTATAA 1 cut(s) 156
Psp5II RGGWCCY 1 cut(s) 1815
Psp6I CCWGG 5 cut(s) 63, 941, 1475, 2211, 2540
PspCI CACGTG 2 cut(s) 1615, 1811
PspFI CCCAGC 2 cut(s) 355, 762
PspGI CCWGG 5 cut(s) 63, 941, 1475, 2211, 2540
PspOMI GGGCCC 1 cut(s) 904
PspPI GGNCC 6 cut(s) 171, 904, 905, 1283, 1641, 1815
PspPPI RGGWCCY 1 cut(s) 1815
PsyI GACNNNGTC 1 cut(s) 1486
PvuI CGATCG 1 cut(s) 102
PvuII CAGCTG 2 cut(s) 762, 2180
RruI TCGCGA 1 cut(s) 2241
RsaI GTAC 9 cut(s) 264, 755, 957, 1118, 1460, 1619, 1796, 1924, 2135
RsaNI GTAC 9 cut(s) 263, 754, 956, 1117, 1459, 1618, 1795, 1923, 2134
RseI CAYNNNNRTG 5 cut(s) 749, 993, 1632, 2060, 2324
SaqAI TTAA 4 cut(s) 809, 1167, 1970, 2226
SatI GCNGC 5 cut(s) 276, 621, 652, 760, 1893
Sau96I GGNCC 6 cut(s) 171, 904, 905, 1283, 1641, 1815
ScaI AGTACT 1 cut(s) 1460
SchI GAGTC 4 cut(s) 497, 526, 1514, 1722
ScrFI CCNGG 9 cut(s) 65, 324, 943, 1023, 1031, 1143, 1477, 2213, 2542
SduI GDGCHC 3 cut(s) 908, 1242, 1691
SexAI ACCWGGT 1 cut(s) 941
SfaNI GCATC 8 cut(s) 501, 547, 757, 1213, 1707, 1861, 2288, 2394
SfoI GGCGCC 1 cut(s) 2105
SfuI TTCGAA 1 cut(s) 163
SinI GGWCC 3 cut(s) 171, 1283, 1815
SmiMI CAYNNNNRTG 5 cut(s) 749, 993, 1632, 2060, 2324
SmlI CTYRAG 3 cut(s) 1454, 1502, 1694
SmoI CTYRAG 3 cut(s) 1454, 1502, 1694
SspDI GGCGCC 1 cut(s) 2103
SspMI CTAG 6 cut(s) 14, 87, 1049, 1341, 1418, 2496
StyD4I CCNGG 9 cut(s) 63, 322, 941, 1021, 1029, 1141, 1475, 2211, 2540
StyI CCWWGG 2 cut(s) 631, 1147
TaaI ACNGT 6 cut(s) 779, 919, 1063, 1220, 1946, 2449
TaiI ACGT 5 cut(s) 476, 1617, 1813, 1953, 2133
TaqII GACCGA 2 cut(s) 885, 1387
TatI WGTACW 5 cut(s) 955, 1116, 1458, 1617, 2133
TauI GCSGC 1 cut(s) 1895
TfiI GAWTC 5 cut(s) 579, 637, 705, 1363, 2522
Tru1I TTAA 4 cut(s) 809, 1167, 1970, 2226
Tru9I TTAA 4 cut(s) 809, 1167, 1970, 2226
TscAI CASTG 7 cut(s) 454, 930, 1094, 1188, 1225, 1846, 2515
TseFI GTSAC 2 cut(s) 1946, 2182
TseI GCWGC 4 cut(s) 275, 620, 651, 759
Tsp45I GTSAC 2 cut(s) 1946, 2182
TspGWI ACGGA 4 cut(s) 237, 591, 788, 2515
TspRI CASTG 7 cut(s) 454, 930, 1094, 1188, 1225, 1846, 2515
Tth111I GACNNNGTC 1 cut(s) 1486
VpaK11BI GGWCC 3 cut(s) 171, 1283, 1815
VspI ATTAAT 1 cut(s) 1970
XapI RAATTY 5 cut(s) 191, 485, 721, 2272, 2309
XbaI TCTAGA 1 cut(s) 1340
XceI RCATGY 2 cut(s) 754, 1141
XcmI CCANNNNNNNNNTGG 1 cut(s) 1094
XmiI GTMKAC 2 cut(s) 644, 1134
XmnI GAANNNNTTC 1 cut(s) 2526
XspI CTAG 6 cut(s) 14, 87, 1049, 1341, 1418, 2496
ZrmI AGTACT 1 cut(s) 1460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.