Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 73, 138, 204, 326 |
| AclWI | GGATC | 3 cut(s) | 323, 336, 467 |
| AcuI | CTGAAG | 2 cut(s) | 312, 507 |
| AfaI | GTAC | 2 cut(s) | 48, 302 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 15, 338, 433 |
| AgsI | TTSAA | 5 cut(s) | 86, 115, 244, 526, 556 |
| AluBI | AGCT | 5 cut(s) | 79, 169, 178, 351, 411 |
| AluI | AGCT | 5 cut(s) | 79, 169, 178, 351, 411 |
| AlwI | GGATC | 3 cut(s) | 323, 336, 467 |
| ApeKI | GCWGC | 2 cut(s) | 76, 323 |
| AsuHPI | GGTGA | 1 cut(s) | 230 |
| AsuII | TTCGAA | 1 cut(s) | 367 |
| BamHI | GGATCC | 1 cut(s) | 328 |
| BbsI | GAAGAC | 1 cut(s) | 104 |
| BbvI | GCAGC | 2 cut(s) | 88, 310 |
| BccI | CCATC | 2 cut(s) | 311, 431 |
| BclI | TGATCA | 1 cut(s) | 172 |
| BfaI | CTAG | 2 cut(s) | 195, 264 |
| BisI | GCNGC | 3 cut(s) | 74, 77, 324 |
| BlsI | GCNGC | 3 cut(s) | 75, 78, 325 |
| BmcAI | AGTACT | 1 cut(s) | 48 |
| BmiI | GGNNCC | 3 cut(s) | 7, 330, 419 |
| BmsI | GCATC | 1 cut(s) | 24 |
| BpiI | GAAGAC | 1 cut(s) | 104 |
| BpmI | CTGGAG | 1 cut(s) | 77 |
| Bpu14I | TTCGAA | 1 cut(s) | 367 |
| BpuEI | CTTGAG | 1 cut(s) | 164 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 15, 338, 433 |
| Bse1I | ACTGG | 2 cut(s) | 12, 419 |
| Bse3DI | GCAATG | 2 cut(s) | 303, 550 |
| BseGI | GGATG | 2 cut(s) | 39, 442 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 15, 338, 433 |
| BseMI | GCAATG | 2 cut(s) | 303, 550 |
| BseNI | ACTGG | 2 cut(s) | 12, 419 |
| BseXI | GCAGC | 2 cut(s) | 88, 310 |
| BsgI | GTGCAG | 1 cut(s) | 384 |
| BslFI | GGGAC | 1 cut(s) | 261 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 15, 338, 433 |
| BsmFI | GGGAC | 1 cut(s) | 261 |
| Bsp119I | TTCGAA | 1 cut(s) | 367 |
| Bsp1407I | TGTACA | 1 cut(s) | 300 |
| Bsp143I | GATC | 3 cut(s) | 172, 328, 472 |
| BspACI | CCGC | 4 cut(s) | 73, 138, 204, 326 |
| BspLI | GGNNCC | 3 cut(s) | 7, 330, 419 |
| BspPI | GGATC | 3 cut(s) | 323, 336, 467 |
| BspT104I | TTCGAA | 1 cut(s) | 367 |
| BsrDI | GCAATG | 2 cut(s) | 303, 550 |
| BsrGI | TGTACA | 1 cut(s) | 300 |
| BsrI | ACTGG | 2 cut(s) | 12, 419 |
| BssMI | GATC | 3 cut(s) | 172, 328, 472 |
| Bst4CI | ACNGT | 1 cut(s) | 433 |
| Bst6I | CTCTTC | 1 cut(s) | 291 |
| BstAUI | TGTACA | 1 cut(s) | 300 |
| BstBI | TTCGAA | 1 cut(s) | 367 |
| BstC8I | GCNNGC | 1 cut(s) | 541 |
| BstDEI | CTNAG | 1 cut(s) | 499 |
| BstF5I | GGATG | 2 cut(s) | 39, 442 |
| BstKTI | GATC | 3 cut(s) | 175, 331, 475 |
| BstMBI | GATC | 3 cut(s) | 172, 328, 472 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 175, 320, 540 |
| BstV1I | GCAGC | 2 cut(s) | 88, 310 |
| BstV2I | GAAGAC | 1 cut(s) | 104 |
| BstX2I | RGATCY | 1 cut(s) | 328 |
| BstYI | RGATCY | 1 cut(s) | 328 |
| BtsCI | GGATG | 2 cut(s) | 39, 442 |
| BtsI | GCAGTG | 2 cut(s) | 456, 541 |
| BtsIMutI | CAGTG | 4 cut(s) | 19, 429, 456, 541 |
| Cac8I | GCNNGC | 1 cut(s) | 541 |
| CseI | GACGC | 1 cut(s) | 443 |
| Csp6I | GTAC | 2 cut(s) | 47, 301 |
| CviJI | RGCY | 8 cut(s) | 8, 25, 79, 169, 178, 233, 351, 411 |
| CviKI_1 | RGCY | 8 cut(s) | 8, 25, 79, 169, 178, 233, 351, 411 |
| CviQI | GTAC | 2 cut(s) | 47, 301 |
| DdeI | CTNAG | 1 cut(s) | 499 |
| DpnI | GATC | 3 cut(s) | 174, 330, 474 |
| DpnII | GATC | 3 cut(s) | 172, 328, 472 |
| DraI | TTTAAA | 1 cut(s) | 274 |
| Eam1104I | CTCTTC | 1 cut(s) | 291 |
| EarI | CTCTTC | 1 cut(s) | 291 |
| Eco57I | CTGAAG | 2 cut(s) | 312, 507 |
| FaiI | YATR | 4 cut(s) | 58, 124, 389, 483 |
| FaqI | GGGAC | 1 cut(s) | 261 |
| FbaI | TGATCA | 1 cut(s) | 172 |
| Fnu4HI | GCNGC | 3 cut(s) | 74, 77, 324 |
| FokI | GGATG | 2 cut(s) | 46, 449 |
| Fsp4HI | GCNGC | 3 cut(s) | 74, 77, 324 |
| FspBI | CTAG | 2 cut(s) | 195, 264 |
| GluI | GCNGC | 3 cut(s) | 74, 77, 324 |
| GsuI | CTGGAG | 1 cut(s) | 77 |
| HgaI | GACGC | 1 cut(s) | 443 |
| HincII | GTYRAC | 1 cut(s) | 550 |
| HindII | GTYRAC | 1 cut(s) | 550 |
| HindIII | AAGCTT | 1 cut(s) | 349 |
| HinfI | GANTC | 3 cut(s) | 115, 336, 364 |
| HphI | GGTGA | 1 cut(s) | 230 |
| Hpy166II | GTNNAC | 1 cut(s) | 550 |
| Hpy188I | TCNGA | 3 cut(s) | 129, 341, 472 |
| Hpy188III | TCNNGA | 3 cut(s) | 94, 181, 290 |
| Hpy8I | GTNNAC | 1 cut(s) | 550 |
| Hpy99I | CGWCG | 1 cut(s) | 156 |
| HpyAV | CCTTC | 1 cut(s) | 431 |
| HpyCH4III | ACNGT | 1 cut(s) | 433 |
| HpyCH4V | TGCA | 5 cut(s) | 37, 253, 401, 534, 539 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 175, 320, 540 |
| HpyF3I | CTNAG | 1 cut(s) | 499 |
| Ksp22I | TGATCA | 1 cut(s) | 172 |
| Kzo9I | GATC | 3 cut(s) | 172, 328, 472 |
| LmnI | GCTCC | 1 cut(s) | 5 |
| LpnPI | CCDG | 5 cut(s) | 15, 25, 107, 303, 400 |
| Lsp1109I | GCAGC | 2 cut(s) | 88, 310 |
| LweI | GCATC | 1 cut(s) | 24 |
| MaeI | CTAG | 2 cut(s) | 195, 264 |
| MaeIII | GTNAC | 1 cut(s) | 223 |
| MalI | GATC | 3 cut(s) | 174, 330, 474 |
| MboI | GATC | 3 cut(s) | 172, 328, 472 |
| MboII | GAAGA | 7 cut(s) | 109, 172, 210, 278, 354, 357, 500 |
| MflI | RGATCY | 1 cut(s) | 328 |
| MluCI | AATT | 2 cut(s) | 110, 309 |
| MmeI | TCCRAC | 2 cut(s) | 137, 484 |
| MnlI | CCTC | 9 cut(s) | 15, 19, 56, 214, 223, 294, 376, 439, 478 |
| MseI | TTAA | 1 cut(s) | 273 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 175, 320, 540 |
| NdeII | GATC | 3 cut(s) | 172, 328, 472 |
| NlaIV | GGNNCC | 3 cut(s) | 7, 330, 419 |
| NspV | TTCGAA | 1 cut(s) | 367 |
| PfeI | GAWTC | 3 cut(s) | 115, 336, 364 |
| PkrI | GCNGC | 3 cut(s) | 75, 78, 325 |
| PspN4I | GGNNCC | 3 cut(s) | 7, 330, 419 |
| PsuI | RGATCY | 1 cut(s) | 328 |
| RsaI | GTAC | 2 cut(s) | 48, 302 |
| RsaNI | GTAC | 2 cut(s) | 47, 301 |
| SaqAI | TTAA | 1 cut(s) | 273 |
| SatI | GCNGC | 3 cut(s) | 74, 77, 324 |
| Sau3AI | GATC | 3 cut(s) | 172, 328, 472 |
| ScaI | AGTACT | 1 cut(s) | 48 |
| SetI | ASST | 8 cut(s) | 81, 171, 180, 225, 353, 387, 413, 423 |
| SfaNI | GCATC | 1 cut(s) | 24 |
| SfuI | TTCGAA | 1 cut(s) | 367 |
| SmlI | CTYRAG | 1 cut(s) | 179 |
| SmoI | CTYRAG | 1 cut(s) | 179 |
| Sse9I | AATT | 2 cut(s) | 110, 309 |
| SsiI | CCGC | 4 cut(s) | 73, 138, 204, 326 |
| SspMI | CTAG | 2 cut(s) | 195, 264 |
| TaaI | ACNGT | 1 cut(s) | 433 |
| TaqI | TCGA | 2 cut(s) | 20, 367 |
| TaqII | GACCGA | 1 cut(s) | 116 |
| TasI | AATT | 2 cut(s) | 110, 309 |
| TatI | WGTACW | 2 cut(s) | 46, 300 |
| TauI | GCSGC | 1 cut(s) | 76 |
| TfiI | GAWTC | 3 cut(s) | 115, 336, 364 |
| Tru1I | TTAA | 1 cut(s) | 273 |
| Tru9I | TTAA | 1 cut(s) | 273 |
| TscAI | CASTG | 4 cut(s) | 19, 436, 456, 541 |
| TseI | GCWGC | 2 cut(s) | 76, 323 |
| TspGWI | ACGGA | 1 cut(s) | 242 |
| TspRI | CASTG | 4 cut(s) | 19, 436, 456, 541 |
| XspI | CTAG | 2 cut(s) | 195, 264 |
| ZrmI | AGTACT | 1 cut(s) | 48 |