Rorug04G0211000

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000072
Physical Location & Seq
Forward (+)
36723917 .. 36728170
4254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0211000.1

Sequence Viewer

Length: 1611 bp
ATGAAGATGAACATTATAAACAATGCAGACTCTTTGGAAGTAGCACTATTCTTGGTTCTGCTCCCACAGTTCACCTTCTTCACATTTGTTCATGGAGAAATTCCAACCACACTTGATGGGCCCTTCAAGCCTGTCACCGTCCCAGTTGACACAAGCTTTCGAGGCAATGCCGTTGACTTGCCAGACTCTGATCCTCGAGTTCGAAGAATCGTCAAAGGGTTCGAGCCTGAACAAATCTCTGTCTCCCTCTCTGCAACCCATGACTCTGTTTGGATATCTTGGATCACAGGGGAATTTCAAATTGGGGATGACATAACGCCATTGGATCCGGACACTGTTGCAAGTGTTGTTGTATATGGAAGGTATGAATATCCCATGACTAATCAATCGACGGGGTATTCTCTGGTTTACAATCAGCTTTATGAGCTTGAAGGCCTTCAAAACTACACTTCTGGAATTATACATCATGTTCGTCTCACAGGTCTGATGCCCAACACCCTGTATCAGTATCAATGTGGAGATCCTTCTATTCCAGCAATGAGCGATGTTTCTTATTTCCAGACTATGCCAGTATCTGGGCCCGAGAGTTATCCTGGCAGAATAGCTGTGGTGGGGGACCTAGGTCTTACATATAACACCACCTCAACAGTTGATCATTTGTTGATCAACCATCCTGATCTTCTTTTATTGGTGGGGGATGTTAGTGATGCTAACCTGTATTTTACAAATGGAACTGCGGATCATTGCTTTCATGAGCAAACTTATCAGCCTCGTTGGGATTACTGGGGAAGGTACATGCAGCCTCTAGTGTCCAAGGTTCCAGTAATGGTAGTAGAAGGGGACCATGAGATTGAGAAACAGGCTGGAAATCAAATGTTTGCTGCTTACAGTTCCCGATTTGCATTCCCCTCGGAAGAGAGTGAATCATCATCTTCGTTATTCTATTCTTTCAATGCAGGGGGGATACACTTTGTAATGCTTGGTGCCTACACATCTTATGAGAAATCAGGGGACCAGTATAACTGGTTGGAGCTAGATCTGGCTAATGTTGACAGAAATGTGACTCCATGGTTGGTAGCTGCATGGCACCCACCATGGTACAGCACCTACACGGCACATTACAGAGAAGCGGAGTGCATGAGAGTTGAGCTGGAAGACATACTTTATGAGTATGGTGTTGATATCGTCTTCAATGGCCATGTTCATGCATATGAGAGGTCAAATCAAGTATACAACTATACTTTAGATCCATGTGGTCCTATTTATATCACAGTTGGTGATGGCGGTAACGGTGAGATGATGGATATTGCACACGCTGATGAACCTGGAAACTGCCCGCAACCATCTATGATGCCTGGTCAAAATATGGAATGTTTTTGTGCATTTAATTTCACTTCAGGCCCAGCAGCAGGAAAATTCTGTTGGGATGAGCAACCTGAGTATAGTGCATATAGAGAAAGTAGCTTTGGGCATGGACTTCTAGAGGTGAGAAATGAGACTCATGCTTTATGGACATGGCATCGAAATCAGGACTTGTACAATCATGCTAGAGATCAAATTTACATAGTAAGGCAGCCTGATATATGTCCAGTTAAGGCCAATGGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

536

Amino Acids

60.52

Weight (kDa)

4.6

Isoelectric Point (pI)

31.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pur_ac_phosph_N PF16656 76 - 188 1.5e-14 Purple acid Phosphatase, N-terminal domain
Metallophos PF00149 200 - 404 2e-20 Calcineurin-like phosphoesterase
Metallophos_C PF14008 473 - 511 1.9e-10 Iron/zinc purple acid phosphatase-like protein C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 17
AccB1I GGYRCC 2 cut(s) 983, 1086
AccB7I CCANNNNNTGG 1 cut(s) 575
AccI GTMKAC 1 cut(s) 1230
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 4 cut(s) 737, 1130, 1284, 1337
AclWI GGATC 7 cut(s) 185, 290, 320, 333, 515, 747, 1241
AcoI YGGCCR 1 cut(s) 1195
AcsI RAATTY 4 cut(s) 99, 293, 1415, 1557
AcuI CTGAAG 1 cut(s) 1380
AfaI GTAC 4 cut(s) 794, 1100, 1538, 1606
AfiI CCNNNNNNNGG 2 cut(s) 575, 1409
AgsI TTSAA 6 cut(s) 127, 299, 431, 440, 952, 1192
AjnI CCWGG 3 cut(s) 592, 1324, 1354
AjuI GAANNNNNNNTTGG 6 cut(s) 285, 317, 1405, 1437, 1449, 1481
AluBI AGCT 8 cut(s) 156, 418, 427, 605, 1033, 1079, 1150, 1464
AluI AGCT 8 cut(s) 156, 418, 427, 605, 1033, 1079, 1150, 1464
Alw26I GTCTC 3 cut(s) 247, 479, 1490
AlwI GGATC 7 cut(s) 185, 290, 320, 333, 515, 747, 1241
AlwNI CAGNNNCTG 2 cut(s) 188, 575
Ama87I CYCGRG 2 cut(s) 195, 581
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 6 cut(s) 119, 433, 578, 1195, 1399, 1596
ApaI GGGCCC 2 cut(s) 123, 582
ApeKI GCWGC 5 cut(s) 799, 881, 1079, 1406, 1573
ApoI RAATTY 4 cut(s) 99, 293, 1415, 1557
Asp700I GAANNNNTTC 1 cut(s) 435
AspA2I CCTAGG 1 cut(s) 619
AspS9I GGNCC 9 cut(s) 119, 120, 578, 579, 616, 841, 1012, 1256, 1400
AsuHPI GGTGA 5 cut(s) 64, 127, 1289, 1304, 1498
AsuII TTCGAA 1 cut(s) 202
AvaI CYCGRG 2 cut(s) 195, 581
AvaII GGWCC 4 cut(s) 616, 841, 1012, 1256
AvrII CCTAGG 1 cut(s) 619
BaeGI GKGCMC 2 cut(s) 123, 582
BalI TGGCCA 1 cut(s) 1197
BamHI GGATCC 1 cut(s) 325
BanI GGYRCC 2 cut(s) 983, 1086
BanII GRGCYC 2 cut(s) 123, 582
BbsI GAAGAC 2 cut(s) 1161, 1180
BbvI GCAGC 5 cut(s) 811, 868, 1066, 1418, 1585
BccI CCATC 5 cut(s) 110, 678, 1274, 1294, 1351
BceAI ACGGC 2 cut(s) 155, 1128
BcgI CGANNNNNNTGC 2 cut(s) 891, 925
BciT130I CCWGG 3 cut(s) 594, 1326, 1356
BciVI GTATCC 1 cut(s) 957
BclI TGATCA 2 cut(s) 652, 663
BcoDI GTCTC 3 cut(s) 247, 479, 1490
BfaI CTAG 5 cut(s) 620, 806, 1034, 1481, 1548
BfuI GTATCC 1 cut(s) 957
BglII AGATCT 1 cut(s) 1036
BisI GCNGC 5 cut(s) 800, 882, 1080, 1407, 1574
BlnI CCTAGG 1 cut(s) 619
BlsI GCNGC 5 cut(s) 801, 883, 1081, 1408, 1575
Bme1390I CCNGG 3 cut(s) 594, 1326, 1356
Bme18I GGWCC 4 cut(s) 616, 841, 1012, 1256
BmeT110I CYCGRG 2 cut(s) 195, 581
BmgT120I GGNCC 9 cut(s) 119, 120, 578, 579, 616, 841, 1012, 1256, 1400
BmiI GGNNCC 9 cut(s) 121, 327, 580, 617, 819, 842, 985, 1013, 1088
BmrFI CCNGG 3 cut(s) 594, 1326, 1356
BmrI ACTGGG 2 cut(s) 137, 793
BmsI GCATC 4 cut(s) 477, 697, 1341, 1528
BmuI ACTGGG 2 cut(s) 137, 793
BoxI GACNNNNGTC 1 cut(s) 621
BpiI GAAGAC 2 cut(s) 1161, 1180
Bpu14I TTCGAA 1 cut(s) 202
BsaJI CCNNGG 5 cut(s) 619, 813, 909, 1067, 1094
BsaWI WCCGGW 1 cut(s) 328
Bsc4I CCNNNNNNNGG 2 cut(s) 575, 1409
Bse1I ACTGG 7 cut(s) 143, 569, 788, 821, 1015, 1028, 1589
Bse3DI GCAATG 3 cut(s) 172, 543, 742
BseAI TCCGGA 1 cut(s) 328
BseBI CCWGG 3 cut(s) 594, 1326, 1356
BseDI CCNNGG 5 cut(s) 619, 813, 909, 1067, 1094
BseGI GGATG 4 cut(s) 313, 670, 703, 1432
BseLI CCNNNNNNNGG 2 cut(s) 575, 1409
BseMI GCAATG 3 cut(s) 172, 543, 742
BseMII CTCAG 1 cut(s) 1428
BseNI ACTGG 7 cut(s) 143, 569, 788, 821, 1015, 1028, 1589
BseSI GKGCMC 2 cut(s) 123, 582
BseXI GCAGC 5 cut(s) 811, 868, 1066, 1418, 1585
BseYI CCCAGC 1 cut(s) 1402
BshFI GGCC 6 cut(s) 121, 435, 580, 1197, 1401, 1598
BshNI GGYRCC 2 cut(s) 983, 1086
BsiHKCI CYCGRG 2 cut(s) 195, 581
BsiSI CCGG 1 cut(s) 329
BslFI GGGAC 4 cut(s) 125, 629, 854, 1025
BslI CCNNNNNNNGG 2 cut(s) 575, 1409
BsmAI GTCTC 3 cut(s) 247, 479, 1490
BsmBI CGTCTC 1 cut(s) 479
BsmFI GGGAC 4 cut(s) 125, 629, 854, 1025
BsmI GAATGC 1 cut(s) 902
BsnI GGCC 6 cut(s) 121, 435, 580, 1197, 1401, 1598
BsoBI CYCGRG 2 cut(s) 195, 581
Bsp119I TTCGAA 1 cut(s) 202
Bsp120I GGGCCC 2 cut(s) 119, 578
Bsp1286I GDGCHC 2 cut(s) 123, 582
Bsp13I TCCGGA 1 cut(s) 328
Bsp1407I TGTACA 1 cut(s) 1536
Bsp19I CCATGG 2 cut(s) 1067, 1094
BspACI CCGC 4 cut(s) 737, 1130, 1284, 1337
BspANI GGCC 6 cut(s) 121, 435, 580, 1197, 1401, 1598
BspCNI CTCAG 1 cut(s) 1429
BspEI TCCGGA 1 cut(s) 328
BspHI TCATGA 1 cut(s) 751
BspLI GGNNCC 9 cut(s) 121, 327, 580, 617, 819, 842, 985, 1013, 1088
BspPI GGATC 7 cut(s) 185, 290, 320, 333, 515, 747, 1241
BspT104I TTCGAA 1 cut(s) 202
BspT107I GGYRCC 2 cut(s) 983, 1086
BsrDI GCAATG 3 cut(s) 172, 543, 742
BsrGI TGTACA 1 cut(s) 1536
BsrI ACTGG 7 cut(s) 143, 569, 788, 821, 1015, 1028, 1589
BssECI CCNNGG 5 cut(s) 619, 813, 909, 1067, 1094
BssNAI GTATAC 1 cut(s) 1231
BssT1I CCWWGG 4 cut(s) 619, 813, 1067, 1094
Bst1107I GTATAC 1 cut(s) 1231
Bst2UI CCWGG 3 cut(s) 594, 1326, 1356
Bst4CI ACNGT 7 cut(s) 69, 139, 337, 649, 890, 1273, 1292
Bst6I CTCTTC 1 cut(s) 909
BstAUI TGTACA 1 cut(s) 1536
BstBI TTCGAA 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 1337
BstDEI CTNAG 1 cut(s) 1437
BstDSI CCRYGG 2 cut(s) 1067, 1094
BstF5I GGATG 4 cut(s) 313, 670, 703, 1432
BstMAI GTCTC 3 cut(s) 247, 479, 1490
BstMWI GCNNNNNNNGC 3 cut(s) 127, 162, 424
BstNI CCWGG 3 cut(s) 594, 1326, 1356
BstNSI RCATGY 1 cut(s) 799
BstPAI GACNNNNGTC 1 cut(s) 621
BstSCI CCNGG 3 cut(s) 592, 1324, 1354
BstSLI GKGCMC 2 cut(s) 123, 582
BstV1I GCAGC 5 cut(s) 811, 868, 1066, 1418, 1585
BstV2I GAAGAC 2 cut(s) 1161, 1180
BstX2I RGATCY 4 cut(s) 325, 520, 1036, 1246
BstYI RGATCY 4 cut(s) 325, 520, 1036, 1246
BstZ17I GTATAC 1 cut(s) 1231
BsuI GTATCC 1 cut(s) 957
BsuRI GGCC 6 cut(s) 121, 435, 580, 1197, 1401, 1598
BtgI CCRYGG 2 cut(s) 1067, 1094
BtgZI GCGATG 1 cut(s) 558
BtsCI GGATG 4 cut(s) 313, 670, 703, 1432
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 1337
CaiI CAGNNNCTG 2 cut(s) 188, 575
CciI TCATGA 1 cut(s) 751
Cfr13I GGNCC 9 cut(s) 119, 120, 578, 579, 616, 841, 1012, 1256, 1400
Csp6I GTAC 4 cut(s) 793, 1099, 1537, 1605
CviQI GTAC 4 cut(s) 793, 1099, 1537, 1605
DdeI CTNAG 1 cut(s) 1437
EaeI YGGCCR 1 cut(s) 1195
Eam1104I CTCTTC 1 cut(s) 909
EarI CTCTTC 1 cut(s) 909
Eco130I CCWWGG 4 cut(s) 619, 813, 1067, 1094
Eco147I AGGCCT 1 cut(s) 435
Eco24I GRGCYC 2 cut(s) 123, 582
Eco32I GATATC 2 cut(s) 276, 1183
Eco47I GGWCC 4 cut(s) 616, 841, 1012, 1256
Eco57I CTGAAG 1 cut(s) 1380
Eco88I CYCGRG 2 cut(s) 195, 581
EcoO109I RGGNCCY 2 cut(s) 120, 616
EcoRII CCWGG 3 cut(s) 592, 1324, 1354
EcoRV GATATC 2 cut(s) 276, 1183
EcoT14I CCWWGG 4 cut(s) 619, 813, 1067, 1094
EcoT22I ATGCAT 1 cut(s) 1210
EcoT38I GRGCYC 2 cut(s) 123, 582
ErhI CCWWGG 4 cut(s) 619, 813, 1067, 1094
Esp3I CGTCTC 1 cut(s) 479
FalI AAGNNNNNCTT 2 cut(s) 1146, 1178
FaqI GGGAC 4 cut(s) 125, 629, 854, 1025
FauI CCCGC 1 cut(s) 1344
FauNDI CATATG 1 cut(s) 1210
FbaI TGATCA 2 cut(s) 652, 663
FblI GTMKAC 1 cut(s) 1230
Fnu4HI GCNGC 5 cut(s) 800, 882, 1080, 1407, 1574
FokI GGATG 4 cut(s) 320, 657, 710, 1439
FriOI GRGCYC 2 cut(s) 123, 582
Fsp4HI GCNGC 5 cut(s) 800, 882, 1080, 1407, 1574
FspBI CTAG 5 cut(s) 620, 806, 1034, 1481, 1548
GluI GCNGC 5 cut(s) 800, 882, 1080, 1407, 1574
GsaI CCCAGC 1 cut(s) 1406
HaeIII GGCC 6 cut(s) 121, 435, 580, 1197, 1401, 1598
HapII CCGG 1 cut(s) 329
HincII GTYRAC 3 cut(s) 148, 175, 1051
HindII GTYRAC 3 cut(s) 148, 175, 1051
HindIII AAGCTT 1 cut(s) 154
HinfI GANTC 7 cut(s) 29, 185, 207, 263, 923, 1063, 1498
HpaII CCGG 1 cut(s) 329
HphI GGTGA 5 cut(s) 64, 127, 1289, 1304, 1498
Hpy166II GTNNAC 6 cut(s) 72, 148, 175, 409, 1051, 1231
Hpy188I TCNGA 3 cut(s) 190, 486, 913
Hpy188III TCNNGA 8 cut(s) 329, 453, 559, 674, 752, 894, 1481, 1529
Hpy8I GTNNAC 6 cut(s) 72, 148, 175, 409, 1051, 1231
Hpy99I CGWCG 1 cut(s) 394
HpyAV CCTTC 8 cut(s) 85, 133, 354, 425, 446, 534, 783, 830
HpyCH4III ACNGT 7 cut(s) 69, 139, 337, 649, 890, 1273, 1292
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 162, 424
HpyF3I CTNAG 1 cut(s) 1437
Kpn2I TCCGGA 1 cut(s) 328
Ksp22I TGATCA 2 cut(s) 652, 663
LmnI GCTCC 2 cut(s) 66, 1030
Lsp1109I GCAGC 5 cut(s) 811, 868, 1066, 1418, 1585
LweI GCATC 4 cut(s) 477, 697, 1341, 1528
MaeI CTAG 5 cut(s) 620, 806, 1034, 1481, 1548
MaeIII GTNAC 3 cut(s) 133, 1060, 1286
MboII GAAGA 8 cut(s) 16, 70, 216, 671, 924, 926, 1166, 1180
MflI RGATCY 4 cut(s) 325, 520, 1036, 1246
MhlI GDGCHC 2 cut(s) 123, 582
MlsI TGGCCA 1 cut(s) 1197
MluCI AATT 7 cut(s) 99, 293, 300, 456, 1387, 1415, 1557
MluNI TGGCCA 1 cut(s) 1197
MlyI GAGTC 5 cut(s) 23, 179, 257, 1057, 1492
MmeI TCCRAC 2 cut(s) 128, 1008
MnlI CCTC 9 cut(s) 155, 204, 257, 652, 780, 813, 919, 1209, 1477
Mox20I TGGCCA 1 cut(s) 1197
Mph1103I ATGCAT 1 cut(s) 1210
MroI TCCGGA 1 cut(s) 328
MroXI GAANNNNTTC 1 cut(s) 435
MscI TGGCCA 1 cut(s) 1197
MseI TTAA 2 cut(s) 1386, 1593
MslI CAYNNNNRTG 3 cut(s) 1203, 1209, 1317
Msp20I TGGCCA 1 cut(s) 1197
MspI CCGG 1 cut(s) 329
MspR9I CCNGG 3 cut(s) 594, 1326, 1356
Mva1269I GAATGC 1 cut(s) 902
MvaI CCWGG 3 cut(s) 594, 1326, 1356
MwoI GCNNNNNNNGC 3 cut(s) 127, 162, 424
NcoI CCATGG 2 cut(s) 1067, 1094
NdeI CATATG 1 cut(s) 1210
NlaIV GGNNCC 9 cut(s) 121, 327, 580, 617, 819, 842, 985, 1013, 1088
NmuCI GTSAC 2 cut(s) 133, 1060
NsiI ATGCAT 1 cut(s) 1210
NspI RCATGY 1 cut(s) 799
NspV TTCGAA 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 195
PagI TCATGA 1 cut(s) 751
PceI AGGCCT 1 cut(s) 435
PctI GAATGC 1 cut(s) 902
PdmI GAANNNNTTC 1 cut(s) 435
PfeI GAWTC 2 cut(s) 207, 923
PflMI CCANNNNNTGG 1 cut(s) 575
PkrI GCNGC 5 cut(s) 801, 883, 1081, 1408, 1575
PleI GAGTC 5 cut(s) 23, 179, 257, 1057, 1492
PpsI GAGTC 5 cut(s) 23, 179, 257, 1057, 1492
PpuMI RGGWCCY 1 cut(s) 616
PshAI GACNNNNGTC 1 cut(s) 621
PsiI TTATAA 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 616
Psp6I CCWGG 3 cut(s) 592, 1324, 1354
PspFI CCCAGC 1 cut(s) 1402
PspGI CCWGG 3 cut(s) 592, 1324, 1354
PspN4I GGNNCC 9 cut(s) 121, 327, 580, 617, 819, 842, 985, 1013, 1088
PspOMI GGGCCC 2 cut(s) 119, 578
PspPI GGNCC 9 cut(s) 119, 120, 578, 579, 616, 841, 1012, 1256, 1400
PspPPI RGGWCCY 1 cut(s) 616
PspXI VCTCGAGB 1 cut(s) 195
PstNI CAGNNNCTG 2 cut(s) 188, 575
PsuI RGATCY 4 cut(s) 325, 520, 1036, 1246
RsaI GTAC 4 cut(s) 794, 1100, 1538, 1606
RsaNI GTAC 4 cut(s) 793, 1099, 1537, 1605
RseI CAYNNNNRTG 3 cut(s) 1203, 1209, 1317
SaqAI TTAA 2 cut(s) 1386, 1593
SatI GCNGC 5 cut(s) 800, 882, 1080, 1407, 1574
Sau96I GGNCC 9 cut(s) 119, 120, 578, 579, 616, 841, 1012, 1256, 1400
SchI GAGTC 5 cut(s) 23, 179, 257, 1057, 1492
ScrFI CCNGG 3 cut(s) 594, 1326, 1356
SduI GDGCHC 2 cut(s) 123, 582
SfaNI GCATC 4 cut(s) 477, 697, 1341, 1528
Sfr274I CTCGAG 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 202
SinI GGWCC 4 cut(s) 616, 841, 1012, 1256
SlaI CTCGAG 1 cut(s) 195
SmiMI CAYNNNNRTG 3 cut(s) 1203, 1209, 1317
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
Sse9I AATT 7 cut(s) 99, 293, 300, 456, 1387, 1415, 1557
SseBI AGGCCT 1 cut(s) 435
SsiI CCGC 4 cut(s) 737, 1130, 1284, 1337
SspMI CTAG 5 cut(s) 620, 806, 1034, 1481, 1548
StuI AGGCCT 1 cut(s) 435
StyD4I CCNGG 3 cut(s) 592, 1324, 1354
StyI CCWWGG 4 cut(s) 619, 813, 1067, 1094
TaaI ACNGT 7 cut(s) 69, 139, 337, 649, 890, 1273, 1292
TaqI TCGA 6 cut(s) 160, 196, 202, 222, 389, 1522
TasI AATT 7 cut(s) 99, 293, 300, 456, 1387, 1415, 1557
TatI WGTACW 1 cut(s) 1536
TfiI GAWTC 2 cut(s) 207, 923
Tru1I TTAA 2 cut(s) 1386, 1593
Tru9I TTAA 2 cut(s) 1386, 1593
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 2 cut(s) 133, 1060
TseI GCWGC 5 cut(s) 799, 881, 1079, 1406, 1573
Tsp45I GTSAC 2 cut(s) 133, 1060
TspDTI ATGAA 7 cut(s) 17, 23, 80, 381, 740, 1193, 1335
TspRI CASTG 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 575
VpaK11BI GGWCC 4 cut(s) 616, 841, 1012, 1256
XapI RAATTY 4 cut(s) 99, 293, 1415, 1557
XbaI TCTAGA 1 cut(s) 1480
XceI RCATGY 1 cut(s) 799
XhoI CTCGAG 1 cut(s) 195
XmaJI CCTAGG 1 cut(s) 619
XmiI GTMKAC 1 cut(s) 1230
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 5 cut(s) 620, 806, 1034, 1481, 1548
Zsp2I ATGCAT 1 cut(s) 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.