Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Myb_DNA-binding | PF00249 | 21 - 67 | 1.6e-15 | Myb-like DNA-binding domain |
| Myb_DNA-bind_6 | PF13921 | 23 - 81 | 2e-13 | Myb-like DNA-binding domain |
| Myb_DNA-binding | PF00249 | 73 - 118 | 2.4e-17 | Myb-like DNA-binding domain |
| Myb_DNA-bind_6 | PF13921 | 77 - 121 | 1.8e-07 | Myb-like DNA-binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 393 |
| Acc36I | ACCTGC | 2 cut(s) | 393, 750 |
| AccB1I | GGYRCC | 1 cut(s) | 391 |
| AccI | GTMKAC | 1 cut(s) | 779 |
| AciI | CCGC | 4 cut(s) | 369, 384, 408, 412 |
| AclWI | GGATC | 1 cut(s) | 920 |
| AcoI | YGGCCR | 1 cut(s) | 409 |
| AcsI | RAATTY | 1 cut(s) | 679 |
| AfaI | GTAC | 3 cut(s) | 101, 514, 737 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 238, 388, 395, 445, 563 |
| AflIII | ACRYGT | 1 cut(s) | 225 |
| AgsI | TTSAA | 4 cut(s) | 94, 157, 355, 679 |
| AhlI | ACTAGT | 1 cut(s) | 875 |
| AjnI | CCWGG | 3 cut(s) | 231, 307, 394 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 831, 863 |
| AluBI | AGCT | 5 cut(s) | 23, 174, 268, 675, 726 |
| AluI | AGCT | 5 cut(s) | 23, 174, 268, 675, 726 |
| Alw21I | GWGCWC | 1 cut(s) | 614 |
| Alw26I | GTCTC | 3 cut(s) | 101, 196, 216 |
| AlwI | GGATC | 1 cut(s) | 920 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 726 |
| AoxI | GGCC | 2 cut(s) | 71, 409 |
| ApeKI | GCWGC | 6 cut(s) | 28, 507, 573, 720, 723, 842 |
| ApoI | RAATTY | 1 cut(s) | 679 |
| AsuHPI | GGTGA | 3 cut(s) | 128, 452, 659 |
| BanI | GGYRCC | 1 cut(s) | 391 |
| BauI | CACGAG | 1 cut(s) | 543 |
| BbsI | GAAGAC | 1 cut(s) | 249 |
| Bbv12I | GWGCWC | 1 cut(s) | 614 |
| BbvI | GCAGC | 6 cut(s) | 40, 519, 585, 732, 735, 854 |
| BccI | CCATC | 4 cut(s) | 180, 471, 637, 711 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 756, 790 |
| BciT130I | CCWGG | 3 cut(s) | 233, 309, 396 |
| BclI | TGATCA | 1 cut(s) | 430 |
| BcoDI | GTCTC | 3 cut(s) | 101, 196, 216 |
| BcuI | ACTAGT | 1 cut(s) | 875 |
| BfaI | CTAG | 2 cut(s) | 876, 946 |
| BfmI | CTRYAG | 2 cut(s) | 175, 652 |
| BfuAI | ACCTGC | 2 cut(s) | 393, 750 |
| BisI | GCNGC | 8 cut(s) | 29, 409, 412, 508, 574, 721, 724, 843 |
| BlsI | GCNGC | 8 cut(s) | 30, 410, 413, 509, 575, 722, 725, 844 |
| BmcAI | AGTACT | 2 cut(s) | 514, 737 |
| Bme1390I | CCNGG | 3 cut(s) | 233, 309, 396 |
| BmiI | GGNNCC | 2 cut(s) | 393, 555 |
| BmrFI | CCNGG | 3 cut(s) | 233, 309, 396 |
| BmrI | ACTGGG | 1 cut(s) | 136 |
| BmsI | GCATC | 3 cut(s) | 546, 842, 894 |
| BmuI | ACTGGG | 1 cut(s) | 136 |
| BpiI | GAAGAC | 1 cut(s) | 249 |
| BpmI | CTGGAG | 1 cut(s) | 417 |
| BpuEI | CTTGAG | 1 cut(s) | 220 |
| BsaAI | YACGTR | 1 cut(s) | 103 |
| BsaBI | GATNNNNATC | 1 cut(s) | 456 |
| BsaI | GGTCTC | 1 cut(s) | 196 |
| BsaJI | CCNNGG | 1 cut(s) | 231 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 238, 388, 395, 445, 563 |
| Bse118I | RCCGGY | 1 cut(s) | 388 |
| Bse1I | ACTGG | 4 cut(s) | 131, 344, 644, 858 |
| Bse3DI | GCAATG | 1 cut(s) | 807 |
| Bse8I | GATNNNNATC | 1 cut(s) | 456 |
| BseBI | CCWGG | 3 cut(s) | 233, 309, 396 |
| BseDI | CCNNGG | 1 cut(s) | 231 |
| BseGI | GGATG | 2 cut(s) | 648, 857 |
| BseJI | GATNNNNATC | 1 cut(s) | 456 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 238, 388, 395, 445, 563 |
| BseMI | GCAATG | 1 cut(s) | 807 |
| BseNI | ACTGG | 4 cut(s) | 131, 344, 644, 858 |
| BseRI | GAGGAG | 2 cut(s) | 92, 251 |
| BseX3I | CGGCCG | 1 cut(s) | 409 |
| BseXI | GCAGC | 6 cut(s) | 40, 519, 585, 732, 735, 854 |
| BseYI | CCCAGC | 1 cut(s) | 726 |
| Bsh1285I | CGRYCG | 1 cut(s) | 412 |
| BshFI | GGCC | 2 cut(s) | 73, 411 |
| BshNI | GGYRCC | 1 cut(s) | 391 |
| BsiEI | CGRYCG | 1 cut(s) | 412 |
| BsiHKAI | GWGCWC | 1 cut(s) | 614 |
| BsiSI | CCGG | 1 cut(s) | 389 |
| BslFI | GGGAC | 1 cut(s) | 214 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 238, 388, 395, 445, 563 |
| BsmAI | GTCTC | 3 cut(s) | 101, 196, 216 |
| BsmFI | GGGAC | 1 cut(s) | 214 |
| BsmI | GAATGC | 2 cut(s) | 264, 891 |
| BsnI | GGCC | 2 cut(s) | 73, 411 |
| Bso31I | GGTCTC | 1 cut(s) | 196 |
| Bsp1286I | GDGCHC | 1 cut(s) | 614 |
| Bsp143I | GATC | 5 cut(s) | 146, 430, 586, 667, 925 |
| BspACI | CCGC | 4 cut(s) | 369, 384, 408, 412 |
| BspANI | GGCC | 2 cut(s) | 73, 411 |
| BspHI | TCATGA | 2 cut(s) | 433, 606 |
| BspLI | GGNNCC | 2 cut(s) | 393, 555 |
| BspMI | ACCTGC | 2 cut(s) | 393, 750 |
| BspPI | GGATC | 1 cut(s) | 920 |
| BspT107I | GGYRCC | 1 cut(s) | 391 |
| BspTNI | GGTCTC | 1 cut(s) | 196 |
| BsrDI | GCAATG | 1 cut(s) | 807 |
| BsrFI | RCCGGY | 1 cut(s) | 388 |
| BsrI | ACTGG | 4 cut(s) | 131, 344, 644, 858 |
| BssAI | RCCGGY | 1 cut(s) | 388 |
| BssECI | CCNNGG | 1 cut(s) | 231 |
| BssMI | GATC | 5 cut(s) | 146, 430, 586, 667, 925 |
| BssSI | CACGAG | 1 cut(s) | 543 |
| Bst2BI | CACGAG | 1 cut(s) | 543 |
| Bst2UI | CCWGG | 3 cut(s) | 233, 309, 396 |
| Bst4CI | ACNGT | 3 cut(s) | 136, 281, 656 |
| Bst6I | CTCTTC | 1 cut(s) | 543 |
| BstBAI | YACGTR | 1 cut(s) | 103 |
| BstC8I | GCNNGC | 1 cut(s) | 373 |
| BstDEI | CTNAG | 2 cut(s) | 182, 525 |
| BstF5I | GGATG | 2 cut(s) | 648, 857 |
| BstKTI | GATC | 5 cut(s) | 149, 433, 589, 670, 928 |
| BstMAI | GTCTC | 3 cut(s) | 101, 196, 216 |
| BstMBI | GATC | 5 cut(s) | 146, 430, 586, 667, 925 |
| BstMCI | CGRYCG | 1 cut(s) | 412 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 34, 408, 504, 869 |
| BstNI | CCWGG | 3 cut(s) | 233, 309, 396 |
| BstNSI | RCATGY | 1 cut(s) | 229 |
| BstSCI | CCNGG | 3 cut(s) | 231, 307, 394 |
| BstSFI | CTRYAG | 2 cut(s) | 175, 652 |
| BstV1I | GCAGC | 6 cut(s) | 40, 519, 585, 732, 735, 854 |
| BstV2I | GAAGAC | 1 cut(s) | 249 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 48 |
| BstZI | CGGCCG | 1 cut(s) | 409 |
| BsuRI | GGCC | 2 cut(s) | 73, 411 |
| BtsCI | GGATG | 2 cut(s) | 648, 857 |
| BtsI | GCAGTG | 1 cut(s) | 867 |
| BtsIMutI | CAGTG | 3 cut(s) | 287, 865, 867 |
| BveI | ACCTGC | 2 cut(s) | 393, 750 |
| Cac8I | GCNNGC | 1 cut(s) | 373 |
| CaiI | CAGNNNCTG | 1 cut(s) | 726 |
| CciI | TCATGA | 2 cut(s) | 433, 606 |
| CciNI | GCGGCCGC | 1 cut(s) | 409 |
| Cfr10I | RCCGGY | 1 cut(s) | 388 |
| CseI | GACGC | 1 cut(s) | 852 |
| Csp6I | GTAC | 3 cut(s) | 100, 513, 736 |
| CviAII | CATG | 4 cut(s) | 113, 226, 434, 607 |
| CviQI | GTAC | 3 cut(s) | 100, 513, 736 |
| DdeI | CTNAG | 2 cut(s) | 182, 525 |
| DpnI | GATC | 5 cut(s) | 148, 432, 588, 669, 927 |
| DpnII | GATC | 5 cut(s) | 146, 430, 586, 667, 925 |
| EaeI | YGGCCR | 1 cut(s) | 409 |
| EagI | CGGCCG | 1 cut(s) | 409 |
| Eam1104I | CTCTTC | 1 cut(s) | 543 |
| EarI | CTCTTC | 1 cut(s) | 543 |
| EclXI | CGGCCG | 1 cut(s) | 409 |
| Eco31I | GGTCTC | 1 cut(s) | 196 |
| Eco52I | CGGCCG | 1 cut(s) | 409 |
| EcoRII | CCWGG | 3 cut(s) | 231, 307, 394 |
| EcoT22I | ATGCAT | 1 cut(s) | 264 |
| FaeI | CATG | 4 cut(s) | 116, 229, 437, 610 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 47, 79, 182, 214 |
| FaqI | GGGAC | 1 cut(s) | 214 |
| FatI | CATG | 4 cut(s) | 112, 225, 433, 606 |
| FauI | CCCGC | 1 cut(s) | 391 |
| FbaI | TGATCA | 1 cut(s) | 430 |
| FblI | GTMKAC | 1 cut(s) | 779 |
| Fnu4HI | GCNGC | 8 cut(s) | 29, 409, 412, 508, 574, 721, 724, 843 |
| FokI | GGATG | 2 cut(s) | 655, 864 |
| Fsp4HI | GCNGC | 8 cut(s) | 29, 409, 412, 508, 574, 721, 724, 843 |
| FspBI | CTAG | 2 cut(s) | 876, 946 |
| GluI | GCNGC | 8 cut(s) | 29, 409, 412, 508, 574, 721, 724, 843 |
| GsaI | CCCAGC | 1 cut(s) | 730 |
| GsuI | CTGGAG | 1 cut(s) | 417 |
| HaeIII | GGCC | 2 cut(s) | 73, 411 |
| HapII | CCGG | 1 cut(s) | 389 |
| HgaI | GACGC | 1 cut(s) | 852 |
| Hin1II | CATG | 4 cut(s) | 116, 229, 437, 610 |
| HincII | GTYRAC | 1 cut(s) | 780 |
| HindII | GTYRAC | 1 cut(s) | 780 |
| HindIII | AAGCTT | 2 cut(s) | 21, 266 |
| HinfI | GANTC | 3 cut(s) | 109, 157, 821 |
| HpaII | CCGG | 1 cut(s) | 389 |
| HphI | GGTGA | 3 cut(s) | 128, 452, 659 |
| Hpy166II | GTNNAC | 2 cut(s) | 780, 867 |
| Hpy188I | TCNGA | 4 cut(s) | 162, 257, 448, 672 |
| Hpy188III | TCNNGA | 4 cut(s) | 434, 467, 545, 607 |
| Hpy8I | GTNNAC | 2 cut(s) | 780, 867 |
| Hpy99I | CGWCG | 2 cut(s) | 778, 781 |
| HpyAV | CCTTC | 2 cut(s) | 113, 486 |
| HpyCH4III | ACNGT | 3 cut(s) | 136, 281, 656 |
| HpyCH4IV | ACGT | 2 cut(s) | 102, 217 |
| HpyCH4V | TGCA | 5 cut(s) | 28, 262, 767, 855, 889 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 34, 408, 504, 869 |
| HpyF3I | CTNAG | 2 cut(s) | 182, 525 |
| HpySE526I | ACGT | 2 cut(s) | 102, 217 |
| Hsp92II | CATG | 4 cut(s) | 116, 229, 437, 610 |
| Ksp22I | TGATCA | 1 cut(s) | 430 |
| Kzo9I | GATC | 5 cut(s) | 146, 430, 586, 667, 925 |
| LmnI | GCTCC | 2 cut(s) | 380, 495 |
| Lsp1109I | GCAGC | 6 cut(s) | 40, 519, 585, 732, 735, 854 |
| LweI | GCATC | 3 cut(s) | 546, 842, 894 |
| MaeI | CTAG | 2 cut(s) | 876, 946 |
| MaeII | ACGT | 2 cut(s) | 102, 217 |
| MaeIII | GTNAC | 5 cut(s) | 285, 485, 629, 647, 659 |
| MalI | GATC | 5 cut(s) | 148, 432, 588, 669, 927 |
| MboI | GATC | 5 cut(s) | 146, 430, 586, 667, 925 |
| MboII | GAAGA | 6 cut(s) | 70, 106, 202, 254, 343, 560 |
| MhlI | GDGCHC | 1 cut(s) | 614 |
| MluCI | AATT | 3 cut(s) | 567, 679, 750 |
| MlyI | GAGTC | 1 cut(s) | 103 |
| MmeI | TCCRAC | 1 cut(s) | 29 |
| Mph1103I | ATGCAT | 1 cut(s) | 264 |
| MslI | CAYNNNNRTG | 1 cut(s) | 850 |
| MspA1I | CMGCKG | 1 cut(s) | 726 |
| MspI | CCGG | 1 cut(s) | 389 |
| MspR9I | CCNGG | 3 cut(s) | 233, 309, 396 |
| Mva1269I | GAATGC | 2 cut(s) | 264, 891 |
| MvaI | CCWGG | 3 cut(s) | 233, 309, 396 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 34, 408, 504, 869 |
| NdeII | GATC | 5 cut(s) | 146, 430, 586, 667, 925 |
| NlaIII | CATG | 4 cut(s) | 116, 229, 437, 610 |
| NlaIV | GGNNCC | 2 cut(s) | 393, 555 |
| NmuCI | GTSAC | 2 cut(s) | 285, 647 |
| NotI | GCGGCCGC | 1 cut(s) | 409 |
| NsiI | ATGCAT | 1 cut(s) | 264 |
| NspI | RCATGY | 1 cut(s) | 229 |
| PagI | TCATGA | 2 cut(s) | 433, 606 |
| PaqCI | CACCTGC | 1 cut(s) | 393 |
| PciI | ACATGT | 1 cut(s) | 225 |
| PctI | GAATGC | 2 cut(s) | 264, 891 |
| PfeI | GAWTC | 2 cut(s) | 157, 821 |
| PkrI | GCNGC | 8 cut(s) | 30, 410, 413, 509, 575, 722, 725, 844 |
| PleI | GAGTC | 1 cut(s) | 103 |
| PpsI | GAGTC | 1 cut(s) | 103 |
| Ppu21I | YACGTR | 1 cut(s) | 103 |
| PscI | ACATGT | 1 cut(s) | 225 |
| Psp6I | CCWGG | 3 cut(s) | 231, 307, 394 |
| PspFI | CCCAGC | 1 cut(s) | 726 |
| PspGI | CCWGG | 3 cut(s) | 231, 307, 394 |
| PspN4I | GGNNCC | 2 cut(s) | 393, 555 |
| PstNI | CAGNNNCTG | 1 cut(s) | 726 |
| PvuII | CAGCTG | 1 cut(s) | 726 |
| RsaI | GTAC | 3 cut(s) | 101, 514, 737 |
| RsaNI | GTAC | 3 cut(s) | 100, 513, 736 |
| RseI | CAYNNNNRTG | 1 cut(s) | 850 |
| SalI | GTCGAC | 1 cut(s) | 778 |
| SatI | GCNGC | 8 cut(s) | 29, 409, 412, 508, 574, 721, 724, 843 |
| Sau3AI | GATC | 5 cut(s) | 146, 430, 586, 667, 925 |
| ScaI | AGTACT | 2 cut(s) | 514, 737 |
| SchI | GAGTC | 1 cut(s) | 103 |
| ScrFI | CCNGG | 3 cut(s) | 233, 309, 396 |
| SduI | GDGCHC | 1 cut(s) | 614 |
| SfaNI | GCATC | 3 cut(s) | 546, 842, 894 |
| SfcI | CTRYAG | 2 cut(s) | 175, 652 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 850 |
| SmlI | CTYRAG | 1 cut(s) | 199 |
| SmoI | CTYRAG | 1 cut(s) | 199 |
| SpeI | ACTAGT | 1 cut(s) | 875 |
| Sse9I | AATT | 3 cut(s) | 567, 679, 750 |
| SsiI | CCGC | 4 cut(s) | 369, 384, 408, 412 |
| SspMI | CTAG | 2 cut(s) | 876, 946 |
| StyD4I | CCNGG | 3 cut(s) | 231, 307, 394 |
| TaaI | ACNGT | 3 cut(s) | 136, 281, 656 |
| TaiI | ACGT | 2 cut(s) | 105, 220 |
| TaqI | TCGA | 5 cut(s) | 313, 684, 779, 792, 837 |
| TaqII | GACCGA | 1 cut(s) | 545 |
| TasI | AATT | 3 cut(s) | 567, 679, 750 |
| TatI | WGTACW | 2 cut(s) | 512, 735 |
| TauI | GCSGC | 2 cut(s) | 411, 414 |
| TfiI | GAWTC | 2 cut(s) | 157, 821 |
| TscAI | CASTG | 3 cut(s) | 294, 865, 874 |
| TseFI | GTSAC | 2 cut(s) | 285, 647 |
| TseI | GCWGC | 6 cut(s) | 28, 507, 573, 720, 723, 842 |
| Tsp45I | GTSAC | 2 cut(s) | 285, 647 |
| TspDTI | ATGAA | 2 cut(s) | 339, 796 |
| TspGWI | ACGGA | 1 cut(s) | 332 |
| TspRI | CASTG | 3 cut(s) | 294, 865, 874 |
| XapI | RAATTY | 1 cut(s) | 679 |
| XceI | RCATGY | 1 cut(s) | 229 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 723 |
| XmiI | GTMKAC | 1 cut(s) | 779 |
| XspI | CTAG | 2 cut(s) | 876, 946 |
| ZrmI | AGTACT | 2 cut(s) | 514, 737 |
| Zsp2I | ATGCAT | 1 cut(s) | 264 |