Rorug04G0153600
ERF Family

Ribosomal protein L34e superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000072
Physical Location & Seq
Forward (+)
26948112 .. 26956839
8728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0153600.1

Sequence Viewer

Length: 2151 bp
ATGGATATTGTTGAATCTATACAAGATCTTCCAGTTCAGGATCCACCAGTGGAGGAGTTCTCCTCTGCTGATTTGATTTGGACCAAATTTGGCAATTCCGAGAATCATGATGATGCAGCCCTCATTCCTTATGACCGAGTAGACGAATTTATAATCGGTGAATGCTCAAATTTAGAGTGTCCAACGCGATTTCATATTGAGAGGGGAAGAAAAAGAAAGAAGGGCAGCTTAAAGGAGTACGCTGATGATGAGTATTTGGAATATAAGCTGTATTGGTGTTCTTTTGGTCCTGAAAATTATGGGGAAGGTGGGGGTATTTTACCTAGCAGAAGATATCGACTCAACACCCGCAATCGCGCTGCTAGACCTCAATCTATGCGGGGCTGTACATGCAATTTTGTGGTGAAGCGTCTCTATGCACGTCCATCACTTGCACTACTTATCTATCATCAGAGGCGTCATGTGAACAAATCTGGTTTTGTTTGCCATGGCCCACTTGATGGAGATGCCATTGGGCCCGGAGCCAAGACAGTTCCATATATCTGTAATGAGATTCAACAACAAACAATGTCTATGATCTATCTGGGTGTTCCTGAAGAGAATATACTAGAAAAACACATTGAGGGGATTGAGCGATATTGTGCTTCAAATGCAAAAGTCAATAGCCTTGCTTCCCAGTATGTCCACAAACTTGGGATGATTATTCAAAGGTCTACCCATGAATTGGATCTTGATGATCAAGCCAGCATCCGCATGTGGGTTGAGCGCAATAAGAAATCCATATTCATTCATCAGGATACTTCAGAAACTGATCCTTTCATTCTGGGGATTCAGACTGAGTGGCAACTGCAACAATTGATACGTTTTGGCCATCGCAGTCTCATTGCAATTGATTCAACATTTGGTATAAAGAGACTTAAGTATCCTTTGTGCACACTTCTTGTCTTTGATTCTAGACAACATGCACTCCCTGTTGCATGGATCATCACACGCAGCTTTTCAAAGCCAGATGTGTCTAAATGGATGACAGCTCTACTTGGTCGAGCTCGTAGTGTTGAGCCTGGATGGAGGGCCAGTGGGTTTTTAATTGATGATGCAGCAGCTGAGACTGATCCCATCAGGGATATTTTTGGTTGTCCTGTCCTATTTTCCCTCTGGCGTGTTCGAAGATCATGGCTGAGGAATATTGTAAAGAAATGCAATAACATTGAAGTTCAACGGGAACTTTTTAAAAGTCTGGGTAATATTGTGCATGGCATTTGGGGTGCAAGTGATACAGCGGTTGCCTTAGAACAACTTACCCAGGATTTTGTTGATCAGACTGCTTTTATGGAATATTTTAAAAGTCATTGGGTGCCTAAGATTGAAATGTGGCTTTCAACAATGAGAAGTCTTCCGCTTGCAAGTCAGGAGGCATCTGGTGCTATTGAAGCATATCACGTGAAGTTGAAAGTGAAATTGTTTGATGATTCACATCTTGGAGCACTCCAAAGAGTTGATTGGTTAGTGCACAAACTGACAACTGAGCTGCACTCAGGCTACTGGCTCGACCGATATGCTGATGAATGTGATTCTTTTCAAAACGTCAAGGAAGAATATATTGCTTCTACATCTTGGCACAGGGCACTGCAAATTCCTGATTCTGCTGTTACCTTGGATGATAAAAACCGTCTCTTTGCCAAGGTTTCAAGCCAGAAAGACAGTAGCATTGTACATCTAGTGTGGAATCCCGGATCAGAATTTTCCTTTTGTGACTGTGTGTGGTCGATGCAAGGAAACATTTGCAAGCATGTCATCAAAGTCAATATGATCTGTGAAAGTCATCAAGGTTATCAACCTTCCATGTCTTTCCAGTCATTCAAAGAGTTGCTCGTCAGCCTATCAAAGAAACCAATGGAGGATTCAATTTCACAAGATCTATCAATGGCCTGGACTATGCAAATGCTCGAGCAAATACGGAACCTTGTAGAAGTGACTAGAGCCAATGATATTGGCACCGTGGTAAACAATCTGCCACTGCAATGGGCTTCCAGAAGAGGCAGAACAGGTGTTGGAAAGCCATCAACTGCTCTTACGACTCTTCCTTCTAGTAAAAGGAGTGCATCAAGGCAGAAGACCCGCAAGCGAAGAAGATTGTCAACATTAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

716

Amino Acids

81.97

Weight (kDa)

8.54

Isoelectric Point (pI)

53.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AccB1I GGYRCC 2 cut(s) 1354, 1994
AccB7I CCANNNNNTGG 2 cut(s) 500, 724
AccI GTMKAC 2 cut(s) 141, 713
AccII CGCG 2 cut(s) 187, 357
AciI CCGC 6 cut(s) 349, 379, 751, 1280, 1397, 2119
AclWI GGATC 7 cut(s) 35, 48, 735, 806, 989, 1106, 1741
AcoI YGGCCR 1 cut(s) 868
AcsI RAATTY 5 cut(s) 86, 146, 169, 1632, 1739
AcuI CTGAAG 2 cut(s) 615, 786
AcvI CACGTG 1 cut(s) 1441
AcyI GRCGYC 1 cut(s) 457
AfaI GTAC 3 cut(s) 239, 388, 1713
AfiI CCNNNNNNNGG 3 cut(s) 500, 724, 757
AflII CTTAAG 1 cut(s) 917
AjiI CACGTC 1 cut(s) 422
AjnI CCWGG 3 cut(s) 1060, 1302, 1928
AjuI GAANNNNNNNTTGG 2 cut(s) 1885, 1917
AluBI AGCT 7 cut(s) 228, 268, 996, 1031, 1046, 1103, 1528
AluI AGCT 7 cut(s) 228, 268, 996, 1031, 1046, 1103, 1528
Alw21I GWGCWC 4 cut(s) 935, 1048, 1486, 1512
Alw26I GTCTC 5 cut(s) 416, 884, 907, 1100, 1676
Alw44I GTGCAC 2 cut(s) 931, 1508
AlwI GGATC 7 cut(s) 35, 48, 735, 806, 989, 1106, 1741
AlwNI CAGNNNCTG 2 cut(s) 809, 1103
Ama87I CYCGRG 1 cut(s) 1946
AoxI GGCC 5 cut(s) 490, 515, 868, 1071, 1926
ApaI GGGCCC 1 cut(s) 519
ApaLI GTGCAC 2 cut(s) 931, 1508
ApeKI GCWGC 7 cut(s) 116, 225, 359, 993, 1097, 1100, 1528
ApoI RAATTY 5 cut(s) 86, 146, 169, 1632, 1739
AspLEI GCGC 2 cut(s) 359, 768
AspS9I GGNCC 6 cut(s) 81, 287, 491, 515, 516, 1071
AsuC2I CCSGG 2 cut(s) 519, 1731
AsuHPI GGTGA 2 cut(s) 170, 415
AsuII TTCGAA 1 cut(s) 1165
AvaI CYCGRG 1 cut(s) 1946
AvaII GGWCC 2 cut(s) 81, 287
BaeGI GKGCMC 4 cut(s) 519, 935, 1512, 1627
BaeI ACNNNNGTAYC 4 cut(s) 905, 938, 1266, 1299
BalI TGGCCA 1 cut(s) 870
BamHI GGATCC 1 cut(s) 40
BanI GGYRCC 2 cut(s) 1354, 1994
BanII GRGCYC 2 cut(s) 519, 1048
BarI GAAGNNNNNNTAC 2 cut(s) 588, 620
BbrPI CACGTG 1 cut(s) 1441
BbsI GAAGAC 2 cut(s) 1385, 2120
Bbv12I GWGCWC 4 cut(s) 935, 1048, 1486, 1512
BbvCI CCTCAGC 1 cut(s) 1178
BbvI GCAGC 7 cut(s) 128, 237, 346, 1005, 1109, 1112, 1515
BccI CCATC 6 cut(s) 433, 494, 879, 1059, 1124, 2068
BcgI CGANNNNNNTGC 2 cut(s) 1538, 1572
BciT130I CCWGG 3 cut(s) 1062, 1304, 1930
BciVI GTATCC 2 cut(s) 790, 933
BclI TGATCA 2 cut(s) 736, 1315
BcnI CCSGG 2 cut(s) 519, 1731
BcoDI GTCTC 5 cut(s) 416, 884, 907, 1100, 1676
BfaI CTAG 7 cut(s) 324, 363, 608, 954, 1718, 1977, 2088
BfrI CTTAAG 1 cut(s) 917
BfuI GTATCC 2 cut(s) 790, 933
BglII AGATCT 2 cut(s) 25, 1915
BisI GCNGC 7 cut(s) 117, 226, 360, 994, 1098, 1101, 1529
BlsI GCNGC 7 cut(s) 118, 227, 361, 995, 1099, 1102, 1530
Bme1390I CCNGG 5 cut(s) 519, 1062, 1304, 1731, 1930
Bme18I GGWCC 2 cut(s) 81, 287
BmeT110I CYCGRG 1 cut(s) 1946
BmgBI CACGTC 1 cut(s) 422
BmgT120I GGNCC 6 cut(s) 81, 287, 491, 515, 516, 1071
BmiI GGNNCC 6 cut(s) 42, 517, 523, 1356, 1961, 1996
BmrFI CCNGG 5 cut(s) 519, 1062, 1304, 1731, 1930
BmrI ACTGGG 1 cut(s) 670
BmsI GCATC 7 cut(s) 103, 496, 756, 1084, 1424, 1758, 2111
BmuI ACTGGG 1 cut(s) 670
BpiI GAAGAC 2 cut(s) 1385, 2120
BplI GAGNNNNNCTC 6 cut(s) 44, 76, 47, 79, 1517, 1549
Bpu10I CCTNAGC 1 cut(s) 1178
Bpu14I TTCGAA 1 cut(s) 1165
BpuMI CCSGG 2 cut(s) 519, 1731
BsaAI YACGTR 1 cut(s) 1441
BsaBI GATNNNNATC 1 cut(s) 1473
BsaHI GRCGYC 1 cut(s) 457
BsaJI CCNNGG 5 cut(s) 487, 1302, 1653, 1680, 1998
BsaXI ACNNNNNCTCC 4 cut(s) 951, 981, 1060, 1090
Bsc4I CCNNNNNNNGG 3 cut(s) 500, 724, 757
Bse1I ACTGG 6 cut(s) 32, 47, 676, 1074, 1547, 1852
Bse3DI GCAATG 2 cut(s) 882, 2027
Bse8I GATNNNNATC 1 cut(s) 1473
BseBI CCWGG 3 cut(s) 1062, 1304, 1930
BseDI CCNNGG 5 cut(s) 487, 1302, 1653, 1680, 1998
BseGI GGATG 5 cut(s) 702, 747, 1029, 1070, 1663
BseJI GATNNNNATC 1 cut(s) 1473
BseLI CCNNNNNNNGG 3 cut(s) 500, 724, 757
BseMI GCAATG 2 cut(s) 882, 2027
BseMII CTCAG 5 cut(s) 828, 1095, 1169, 1515, 1548
BseNI ACTGG 6 cut(s) 32, 47, 676, 1074, 1547, 1852
BseRI GAGGAG 2 cut(s) 52, 68
BseSI GKGCMC 4 cut(s) 519, 935, 1512, 1627
BseXI GCAGC 7 cut(s) 128, 237, 346, 1005, 1109, 1112, 1515
BsgI GTGCAG 1 cut(s) 1514
Bsh1236I CGCG 2 cut(s) 187, 357
Bsh1285I CGRYCG 1 cut(s) 1552
BshFI GGCC 5 cut(s) 492, 517, 870, 1073, 1928
BshNI GGYRCC 2 cut(s) 1354, 1994
BsiEI CGRYCG 1 cut(s) 1552
BsiHKAI GWGCWC 4 cut(s) 935, 1048, 1486, 1512
BsiHKCI CYCGRG 1 cut(s) 1946
BsiSI CCGG 2 cut(s) 519, 1731
BslI CCNNNNNNNGG 3 cut(s) 500, 724, 757
BsmAI GTCTC 5 cut(s) 416, 884, 907, 1100, 1676
BsmBI CGTCTC 2 cut(s) 416, 1676
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 5 cut(s) 492, 517, 870, 1073, 1928
BsoBI CYCGRG 1 cut(s) 1946
Bsp119I TTCGAA 1 cut(s) 1165
Bsp120I GGGCCC 1 cut(s) 515
Bsp1286I GDGCHC 6 cut(s) 519, 935, 1048, 1486, 1512, 1627
Bsp1407I TGTACA 2 cut(s) 386, 1711
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 6 cut(s) 349, 379, 751, 1280, 1397, 2119
BspANI GGCC 5 cut(s) 492, 517, 870, 1073, 1928
BspCNI CTCAG 5 cut(s) 829, 1096, 1170, 1516, 1547
BspFNI CGCG 2 cut(s) 187, 357
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 6 cut(s) 42, 517, 523, 1356, 1961, 1996
BspPI GGATC 7 cut(s) 35, 48, 735, 806, 989, 1106, 1741
BspT104I TTCGAA 1 cut(s) 1165
BspT107I GGYRCC 2 cut(s) 1354, 1994
BspTI CTTAAG 1 cut(s) 917
BsrDI GCAATG 2 cut(s) 882, 2027
BsrGI TGTACA 2 cut(s) 386, 1711
BsrI ACTGG 6 cut(s) 32, 47, 676, 1074, 1547, 1852
BssECI CCNNGG 5 cut(s) 487, 1302, 1653, 1680, 1998
BssNI GRCGYC 1 cut(s) 457
BssT1I CCWWGG 3 cut(s) 487, 1653, 1680
Bst2UI CCWGG 3 cut(s) 1062, 1304, 1930
Bst4CI ACNGT 5 cut(s) 532, 1670, 1703, 1757, 1999
Bst6I CTCTTC 3 cut(s) 591, 2029, 2085
BstACI GRCGYC 1 cut(s) 457
BstAFI CTTAAG 1 cut(s) 917
BstAPI GCANNNNNTGC 1 cut(s) 1421
BstAUI TGTACA 2 cut(s) 386, 1711
BstBAI YACGTR 1 cut(s) 1441
BstBI TTCGAA 1 cut(s) 1165
BstC8I GCNNGC 4 cut(s) 745, 1401, 1787, 2123
BstDEI CTNAG 7 cut(s) 837, 1104, 1178, 1288, 1359, 1524, 1534
BstDSI CCRYGG 2 cut(s) 487, 1998
BstF5I GGATG 5 cut(s) 702, 747, 1029, 1070, 1663
BstFNI CGCG 2 cut(s) 187, 357
BstHHI GCGC 2 cut(s) 359, 768
BstMAI GTCTC 5 cut(s) 416, 884, 907, 1100, 1676
BstMCI CGRYCG 1 cut(s) 1552
BstMWI GCNNNNNNNGC 4 cut(s) 390, 650, 1421, 1430
BstNI CCWGG 3 cut(s) 1062, 1304, 1930
BstNSI RCATGY 4 cut(s) 393, 757, 965, 1793
BstSCI CCNGG 5 cut(s) 517, 1060, 1302, 1729, 1928
BstSLI GKGCMC 4 cut(s) 519, 935, 1512, 1627
BstUI CGCG 2 cut(s) 187, 357
BstV1I GCAGC 7 cut(s) 128, 237, 346, 1005, 1109, 1112, 1515
BstV2I GAAGAC 2 cut(s) 1385, 2120
BstX2I RGATCY 4 cut(s) 25, 40, 727, 1915
BstXI CCANNNNNNTGG 2 cut(s) 692, 2022
BstYI RGATCY 4 cut(s) 25, 40, 727, 1915
BsuI GTATCC 2 cut(s) 790, 933
BsuRI GGCC 5 cut(s) 492, 517, 870, 1073, 1928
BtgI CCRYGG 2 cut(s) 487, 1998
BtgZI GCGATG 1 cut(s) 857
BtrI CACGTC 1 cut(s) 422
BtsCI GGATG 5 cut(s) 702, 747, 1029, 1070, 1663
BtsI GCAGTG 2 cut(s) 1625, 2015
BtsIMutI CAGTG 4 cut(s) 54, 1081, 1625, 2015
Cac8I GCNNGC 4 cut(s) 745, 1401, 1787, 2123
CaiI CAGNNNCTG 2 cut(s) 809, 1103
CciI TCATGA 1 cut(s) 106
CfoI GCGC 2 cut(s) 359, 768
Cfr13I GGNCC 6 cut(s) 81, 287, 491, 515, 516, 1071
CseI GACGC 2 cut(s) 398, 446
Csp6I GTAC 3 cut(s) 238, 387, 1712
CviQI GTAC 3 cut(s) 238, 387, 1712
DdeI CTNAG 7 cut(s) 837, 1104, 1178, 1288, 1359, 1524, 1534
DraI TTTAAA 2 cut(s) 1231, 1342
EaeI YGGCCR 1 cut(s) 868
Eam1104I CTCTTC 3 cut(s) 591, 2029, 2085
EarI CTCTTC 3 cut(s) 591, 2029, 2085
Ecl136II GAGCTC 1 cut(s) 1046
Eco130I CCWWGG 3 cut(s) 487, 1653, 1680
Eco24I GRGCYC 2 cut(s) 519, 1048
Eco32I GATATC 1 cut(s) 335
Eco47I GGWCC 2 cut(s) 81, 287
Eco53kI GAGCTC 1 cut(s) 1046
Eco57I CTGAAG 2 cut(s) 615, 786
Eco72I CACGTG 1 cut(s) 1441
Eco88I CYCGRG 1 cut(s) 1946
EcoICRI GAGCTC 1 cut(s) 1046
EcoRII CCWGG 3 cut(s) 1060, 1302, 1928
EcoRV GATATC 1 cut(s) 335
EcoT14I CCWWGG 3 cut(s) 487, 1653, 1680
EcoT38I GRGCYC 2 cut(s) 519, 1048
ErhI CCWWGG 3 cut(s) 487, 1653, 1680
Esp3I CGTCTC 2 cut(s) 416, 1676
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FauI CCCGC 3 cut(s) 356, 372, 2126
FbaI TGATCA 2 cut(s) 736, 1315
FblI GTMKAC 2 cut(s) 141, 713
Fnu4HI GCNGC 7 cut(s) 117, 226, 360, 994, 1098, 1101, 1529
FokI GGATG 5 cut(s) 709, 734, 1036, 1077, 1670
FriOI GRGCYC 2 cut(s) 519, 1048
Fsp4HI GCNGC 7 cut(s) 117, 226, 360, 994, 1098, 1101, 1529
FspBI CTAG 7 cut(s) 324, 363, 608, 954, 1718, 1977, 2088
GlaI GCGC 2 cut(s) 358, 767
GluI GCNGC 7 cut(s) 117, 226, 360, 994, 1098, 1101, 1529
HaeIII GGCC 5 cut(s) 492, 517, 870, 1073, 1928
HapII CCGG 2 cut(s) 519, 1731
HgaI GACGC 2 cut(s) 398, 446
HhaI GCGC 2 cut(s) 359, 768
Hin1I GRCGYC 1 cut(s) 457
Hin6I GCGC 2 cut(s) 357, 766
HinP1I GCGC 2 cut(s) 357, 766
HincII GTYRAC 1 cut(s) 2139
HindII GTYRAC 1 cut(s) 2139
HpaII CCGG 2 cut(s) 519, 1731
HphI GGTGA 2 cut(s) 170, 415
Hpy166II GTNNAC 8 cut(s) 142, 466, 685, 714, 933, 1510, 2005, 2139
Hpy188I TCNGA 6 cut(s) 100, 453, 805, 834, 1320, 1738
Hpy8I GTNNAC 8 cut(s) 142, 466, 685, 714, 933, 1510, 2005, 2139
HpyAV CCTTC 4 cut(s) 214, 299, 1848, 2094
HpyCH4III ACNGT 5 cut(s) 532, 1670, 1703, 1757, 1999
HpyCH4IV ACGT 4 cut(s) 421, 862, 1440, 1584
HpyF10VI GCNNNNNNNGC 4 cut(s) 390, 650, 1421, 1430
HpyF3I CTNAG 7 cut(s) 837, 1104, 1178, 1288, 1359, 1524, 1534
HpySE526I ACGT 4 cut(s) 421, 862, 1440, 1584
Hsp92I GRCGYC 1 cut(s) 457
HspAI GCGC 2 cut(s) 357, 766
Ksp22I TGATCA 2 cut(s) 736, 1315
LmnI GCTCC 2 cut(s) 521, 1481
Lsp1109I GCAGC 7 cut(s) 128, 237, 346, 1005, 1109, 1112, 1515
LweI GCATC 7 cut(s) 103, 496, 756, 1084, 1424, 1758, 2111
MaeI CTAG 7 cut(s) 324, 363, 608, 954, 1718, 1977, 2088
MaeII ACGT 4 cut(s) 421, 862, 1440, 1584
MaeIII GTNAC 3 cut(s) 1648, 1751, 1972
MfeI CAATTG 2 cut(s) 854, 888
MflI RGATCY 4 cut(s) 25, 40, 727, 1915
MhlI GDGCHC 6 cut(s) 519, 935, 1048, 1486, 1512, 1627
MlsI TGGCCA 1 cut(s) 870
MluNI TGGCCA 1 cut(s) 870
MlyI GAGTC 2 cut(s) 333, 2071
MmeI TCCRAC 2 cut(s) 206, 2032
Mox20I TGGCCA 1 cut(s) 870
MscI TGGCCA 1 cut(s) 870
MseI TTAA 6 cut(s) 230, 918, 1085, 1230, 1341, 2144
MslI CAYNNNNRTG 3 cut(s) 111, 752, 2020
Msp20I TGGCCA 1 cut(s) 870
MspA1I CMGCKG 2 cut(s) 1103, 1280
MspCI CTTAAG 1 cut(s) 917
MspI CCGG 2 cut(s) 519, 1731
MspR9I CCNGG 5 cut(s) 519, 1062, 1304, 1731, 1930
MunI CAATTG 2 cut(s) 854, 888
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 3 cut(s) 1062, 1304, 1930
MvnI CGCG 2 cut(s) 187, 357
MwoI GCNNNNNNNGC 4 cut(s) 390, 650, 1421, 1430
NciI CCSGG 2 cut(s) 519, 1731
NcoI CCATGG 1 cut(s) 487
NlaIV GGNNCC 6 cut(s) 42, 517, 523, 1356, 1961, 1996
NmuCI GTSAC 2 cut(s) 1751, 1972
NspI RCATGY 4 cut(s) 393, 757, 965, 1793
NspV TTCGAA 1 cut(s) 1165
PaeR7I CTCGAG 1 cut(s) 1946
PagI TCATGA 1 cut(s) 106
PctI GAATGC 1 cut(s) 167
PflMI CCANNNNNTGG 2 cut(s) 500, 724
PfoI TCCNGGA 1 cut(s) 1729
PkrI GCNGC 7 cut(s) 118, 227, 361, 995, 1099, 1102, 1530
PleI GAGTC 2 cut(s) 333, 2071
PmaCI CACGTG 1 cut(s) 1441
PmlI CACGTG 1 cut(s) 1441
PpsI GAGTC 2 cut(s) 333, 2071
Ppu21I YACGTR 1 cut(s) 1441
PsiI TTATAA 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 1048
Psp6I CCWGG 3 cut(s) 1060, 1302, 1928
PspCI CACGTG 1 cut(s) 1441
PspGI CCWGG 3 cut(s) 1060, 1302, 1928
PspN4I GGNNCC 6 cut(s) 42, 517, 523, 1356, 1961, 1996
PspOMI GGGCCC 1 cut(s) 515
PspPI GGNCC 6 cut(s) 81, 287, 491, 515, 516, 1071
PspXI VCTCGAGB 1 cut(s) 1946
PstNI CAGNNNCTG 2 cut(s) 809, 1103
PsuI RGATCY 4 cut(s) 25, 40, 727, 1915
PvuII CAGCTG 1 cut(s) 1103
RsaI GTAC 3 cut(s) 239, 388, 1713
RsaNI GTAC 3 cut(s) 238, 387, 1712
RseI CAYNNNNRTG 3 cut(s) 111, 752, 2020
SacI GAGCTC 1 cut(s) 1048
SaqAI TTAA 6 cut(s) 230, 918, 1085, 1230, 1341, 2144
SatI GCNGC 7 cut(s) 117, 226, 360, 994, 1098, 1101, 1529
Sau96I GGNCC 6 cut(s) 81, 287, 491, 515, 516, 1071
SchI GAGTC 2 cut(s) 333, 2071
ScrFI CCNGG 5 cut(s) 519, 1062, 1304, 1731, 1930
SduI GDGCHC 6 cut(s) 519, 935, 1048, 1486, 1512, 1627
SfaNI GCATC 7 cut(s) 103, 496, 756, 1084, 1424, 1758, 2111
Sfr274I CTCGAG 1 cut(s) 1946
SfuI TTCGAA 1 cut(s) 1165
SinI GGWCC 2 cut(s) 81, 287
SlaI CTCGAG 1 cut(s) 1946
SmiMI CAYNNNNRTG 3 cut(s) 111, 752, 2020
SmlI CTYRAG 2 cut(s) 917, 1946
SmoI CTYRAG 2 cut(s) 917, 1946
SsiI CCGC 6 cut(s) 349, 379, 751, 1280, 1397, 2119
SspI AATATT 3 cut(s) 1186, 1246, 1337
SspMI CTAG 7 cut(s) 324, 363, 608, 954, 1718, 1977, 2088
SstI GAGCTC 1 cut(s) 1048
StyD4I CCNGG 5 cut(s) 517, 1060, 1302, 1729, 1928
StyI CCWWGG 3 cut(s) 487, 1653, 1680
TaaI ACNGT 5 cut(s) 532, 1670, 1703, 1757, 1999
TaiI ACGT 4 cut(s) 424, 865, 1443, 1587
TaqI TCGA 6 cut(s) 337, 1042, 1165, 1548, 1766, 1947
TaqII GACCGA 2 cut(s) 150, 1566
TatI WGTACW 2 cut(s) 386, 1711
Tru1I TTAA 6 cut(s) 230, 918, 1085, 1230, 1341, 2144
Tru9I TTAA 6 cut(s) 230, 918, 1085, 1230, 1341, 2144
TscAI CASTG 4 cut(s) 54, 1081, 1632, 2022
TseFI GTSAC 2 cut(s) 1751, 1972
TseI GCWGC 7 cut(s) 116, 225, 359, 993, 1097, 1100, 1528
Tsp45I GTSAC 2 cut(s) 1751, 1972
TspDTI ATGAA 6 cut(s) 182, 735, 775, 779, 808, 1578
TspGWI ACGGA 1 cut(s) 1972
TspRI CASTG 4 cut(s) 54, 1081, 1632, 2022
Van91I CCANNNNNTGG 2 cut(s) 500, 724
Vha464I CTTAAG 1 cut(s) 917
VneI GTGCAC 2 cut(s) 931, 1508
VpaK11BI GGWCC 2 cut(s) 81, 287
XapI RAATTY 5 cut(s) 86, 146, 169, 1632, 1739
XbaI TCTAGA 1 cut(s) 953
XceI RCATGY 4 cut(s) 393, 757, 965, 1793
XhoI CTCGAG 1 cut(s) 1946
XmiI GTMKAC 2 cut(s) 141, 713
XspI CTAG 7 cut(s) 324, 363, 608, 954, 1718, 1977, 2088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.