FvH4_4g13062

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000072
Physical Location & Seq
Reverse (-)
16692130 .. 16697452
5323 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13062.t1

Sequence Viewer

Length: 3669 bp
ATGGCAACGAGAACCACAGCAAAGGATGTATTCTATATTGATCCAGAGTGTTCTCTGAAAGGGAAAAGATTTGGTCTCTTCCCCAAACCAAAAGTTTGGTCCATGAAAGTGCAAGACGATGATTTTGTTGATAGAGTTCGTTCTCGAACCTCTTTTGAAGAAGAGAATGGAATGGAGATGGCCGGGATGGAGGTAGACGGTCAAGGGGTTGAAATGTCAGGGGAGCCTCCGTCCAAACGTCGAAGACAGCTGTCGGAAAATTTACTGTCTATTCTTCCCAGGAAAGATGAACAGAGTAATTCTCGGGATATGATTGAGATTGACATGCCGGATGTTACGGAGAGTAATTTGAGGGATAGCCAAGCCGGATTTTCCTCTGCAAAATTTATCGGGTTTGAGTCGAAAACAGAAAATTTGGGCGGCATTCAAGTCTCTTTGAGAGGAGCTAGCACACGTGGGAAGGAGAAAATTGGTTACGTTGAGCTGGGCTCAGTTGTTTCCAAGCCCAATATGATTGTAAATGGAGATAAGGCCCAAACTAAAGTCTCCATGGAAGGAATTTTTGTCCCAAAGCCCGAAGTCACAAAAGATAAGGCAATTAGCTCTCTCTCCCCTAAGCCTAAAACGAGAACTCTTACCCAGAAGAGTGTTCGCTCAGGTGGTGGCAAAGGAAAAGAAGTGGAGATTCATGAGGTCGGCAAGCAAGAAGTGCGACGAGGACAGAGTGAAGAGCAAACTGCAGGAAATGATGGCAGGACTCTTGAGAAAAAGAGGAGAGGCAAGAAGGTAGTGGTGGCGCAAGGGACGACTGCGACGGGGGCTGATAATGATCATAAGGTGAAATGCGGTAAGGGTAATAAATGTGGCAGAGGAAGAGGTTTTGTAGTGGGTCATGGACGTGTCTATACGCGCAGGTCAGTTTCTCATTTTGTTTCTGGTGTATCAATGTCTGCTGATGTTAACTCAACCGTGATGGGCTCCGGTTGTAGTGTAGTAGGTAAAGTCGGTTTTAGCAGCGGTGGCTTGGCAATGTGTTGGAAAAACAAGATGGAGGTGCGACCAGTGGGTTCCTCCCAAGGTCACATTGATGTCGCAGTTTTGTTTAAAGGGCAAGTAATAAGGGTTACTGGATTCTATGGGAATCCTGACTCTCAACTTAGACACTTTTCGTGGGATCTGCTGAGGCGCATCGCAAAGTCAGTCAGGGGTCCATGGATTGTGTTTGGGGACTTTAACGAATTACTGTGCATTGGAGATAAAAGAGGGGGTGGTGAACGGCCTGAAGCTCAAATTCGGAGATTCCGTGAAGCAGTAGATGAGTGTGGCTTACAGGAGGTAGAATTCTCAGGGCCGACCTTTACATGGAAGAGGGGGACCTTGCTAGAAAGACTAGACAGATGTTTCATTAATGAGGAAGCAGGGGTTTTGTTTCCACGATTTCATGAAGCACATGTGGATGTGGGAGCTTCTGACCATCTCTCATTAGTCTTATTTTCAGAGGGGTTAAATTGTGGGAGAAAAGGAGGATGGAAGGGGCTAAGAAGGTTCCAATTTGAACCTTTCTGGGCTAAGGAGCAGGAGAGTAAACAAGTAGTCGCTGATGCTTGGCAGAGTGATGGGAACCAATTAAATAATGTACGAGCCAAACTGGCTGGTGTATCAAAGGAGCTACAAAGGTGGAATGAGAACAAATTTGGCCTTATTCCCAAAAAGATACGACAACTTAATAAGGAACTGGAGCAATGTCCTTTTGATAGTAGTGATGAAGTAGTGCAAAATCGGAGAAATGCTATTGTGGCGGAGCTTAATAAGTCCCTGGAAATTGAGGAGTCGATTTGGAGACAAAGGTCTAGAATTAATTGGCTACAAGAGGGTGATCGGAATACTAAATTTTTTCATGGTTTTGCCAAAGGGAGGGGGCGGAAGAATAGGGTGTTGGGAATTATGTCTAGCACTGGTGAATGGATTGAGCAAGAGACTGAGATTCAACAAGCTTTCAACACTCACTTTTCTCAGTTGTTCACTTCAGAAGGATGTGATCATATGGAGCTGGTTTTGGACACTGTTCAGAGAAAAGTCACAGATGACATGAATGCTAAGCTGAACAAGCCGAATAAGATGGATGGAGGACTAGGCTTCCGTGACATTGAATGTTTTAATCAAGCACTACTAGCAAAAACTGTTTGGAGGATTGTAATGCAGCCGACCTCTCTAGCCAATAGGGTTTTACAAGCTAAATATGTTCATGGTGGAGACTGGGCAGCGGCACCGATTGGACCAAAACCGTCTTTCATTTGGAGAAGTTTGGTGTGGGGGAAAAAGCTTTTATGTGCTGGTATTAGATGGCGGGTTGGTAATGGTACTGCAATCCGAATCTGGGAGGATAAATGGCTTCCCTCTCCGTGGTCTTTTCGAGTAGTAACTCCAAGGTTTATGGATAGCAACACTAGAGTGAGTACTTTGATGACGAGTCCAAGTATGTGGGATGTAATTTTTATTCAAACTCACTTCCTTCCTGTGGATGCGGATAAAATCTTGTCCATTCCAGTATGTGAAAGGAGTGGAAGTGATGTAGCTATTTGGCACTACACAAATGATGGATATTACACTGTGAAATCTGGTTACTGGTTGGCAATGGAGTTAAAACAGGTAGGAAAGAGCACGAGCAGTAGTGGTGAGAAGGGTGAAACCAACTCCAATTCGGTATGGAGTATTATCTGGGGTCTCTCAGTCCCAAACAAAGTCAAGCTCTTTCTTTGGAGAGCTTGCCATGCCTTCTTGCCTTGTGTTGAGCGTTTGTTTAAACGAAAAGTGTGTTCTTCGGATATTTGTAGTAGGTGTGGTGGTGCCAGTGAATCAGTTTTACACAGTTTATGGGCTTGCCGCATAGCTCAGAAAGTGTGGAAGTATTCCTGGTTAGCTGGAGTGGTGAAGCTATGGAAATTTCAGTCTTTTAGTGATCTCTTACATAGGGTGGCTATGGAGGGCACGAATAAAGAGTTGGATTTGTTTGGATTAGTTTGCTGGTGGATCTGGAAGTGTAGGAATGATACTATACATGGTAAGGAGGGTCTGAAGCCTGATATACTTGTCCAGCGGTGCAAGGAATGGCAGTCAGAATTAGCTCAGACTCAGAGCACTAACAAACCGATTACTGGTTTTGTTGTAAAGGAGATAGTGCGCACCCCACAGGTCAGTAACACTTCTAGTTCTCTATTGTATTTTGATGGGGCTGTGGATAAGTTAAATGGAAGGGTGGGAGTAGGAGCTGTGGTGTTGAACCCAGAACATGGCCTTCTAGGTGCCTTATCAATACCACTTCCTCTTTCTCTAAACCCAAAAGCCACGGAAGCACTTGCCTTGTGGTATGGAATTGAGTATGGAAAGAAGCTGGGATTATTAAATGTTGATATAAGAGGTGATGCTCTTAATGTGCTTAATGGCTTAAATACTCGTGGCTGGGACTTCAGCGAGATAGGAGGCGTTCTTGATGCAGTGAGGTTGACTATGACTGAATTTGAGATAGTTTCGTGGAGGCATGTGAAGAAACGCTTCAATGCAGTAGCACATGAACTAGCTAGAAAGGCTTTGTCATTAGCAGAAGGTTGGTTTTGCAAAGAGCAAGGGCCTGAATGGCTCCTTCAGTTAATTGCTGGTAGTAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

1223

Amino Acids

136.92

Weight (kDa)

9.33

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 333 - 492 7.4e-09 Endonuclease/Exonuclease/phosphatase family
zf-RVT PF13966 897 - 968 1.3e-12 zinc-binding in reverse transcriptase
RVT_3 PF13456 1075 - 1196 4.1e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 3182
Acc36I ACCTGC 1 cut(s) 903
AccB1I GGYRCC 3 cut(s) 2266, 2846, 3302
AccB7I CCANNNNNTGG 1 cut(s) 3290
AccI GTMKAC 1 cut(s) 195
AccII CGCG 1 cut(s) 910
AclWI GGATC 3 cut(s) 35, 1182, 3038
AcoI YGGCCR 1 cut(s) 180
AcuI CTGAAG 5 cut(s) 1302, 2010, 3095, 3451, 3626
AcvI CACGTG 1 cut(s) 455
AfaI GTAC 3 cut(s) 1638, 2362, 2458
AfiI CCNNNNNNNGG 7 cut(s) 1362, 1914, 2377, 2403, 2518, 3155, 3290
AflIII ACRYGT 3 cut(s) 452, 898, 1450
AjiI CACGTC 1 cut(s) 899
AjnI CCWGG 3 cut(s) 278, 1815, 2912
AjuI GAANNNNNNNTTGG 4 cut(s) 1919, 1951, 2984, 3016
AleI CACNNNNGTG 1 cut(s) 2450
Alw21I GWGCWC 2 cut(s) 2663, 3140
Alw26I GTCTC 7 cut(s) 80, 436, 550, 1834, 1970, 2247, 2729
AlwI GGATC 3 cut(s) 35, 1182, 3038
Ama87I CYCGRG 1 cut(s) 303
AoxI GGCC 7 cut(s) 180, 531, 1277, 1349, 1696, 3292, 3626
ApeKI GCWGC 3 cut(s) 1014, 2200, 2261
ArsI GACNNNNNNTTYG 4 cut(s) 83, 107, 115, 139
AseI ATTAAT 2 cut(s) 1407, 1857
Asp700I GAANNNNTTC 1 cut(s) 3551
AspLEI GCGC 4 cut(s) 799, 912, 1188, 3183
AspS9I GGNCC 7 cut(s) 99, 532, 1208, 1349, 1374, 2276, 3626
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 8 cut(s) 850, 1283, 1886, 1970, 2687, 2696, 2941, 3431
AsuNHI GCTAGC 1 cut(s) 446
AvaI CYCGRG 1 cut(s) 303
AvaII GGWCC 4 cut(s) 99, 1208, 1374, 2276
BaeGI GKGCMC 1 cut(s) 2990
BanI GGYRCC 3 cut(s) 2266, 2846, 3302
BanII GRGCYC 2 cut(s) 491, 980
BauI CACGAG 2 cut(s) 2662, 3453
BbrPI CACGTG 1 cut(s) 455
BbsI GAAGAC 1 cut(s) 250
Bbv12I GWGCWC 2 cut(s) 2663, 3140
BbvCI CCTCAGC 1 cut(s) 1181
BbvI GCAGC 3 cut(s) 1026, 2212, 2273
BceAI ACGGC 1 cut(s) 1292
BciT130I CCWGG 3 cut(s) 280, 1817, 2914
BclI TGATCA 2 cut(s) 829, 2038
BcnI CCSGG 1 cut(s) 184
BcoDI GTCTC 7 cut(s) 80, 436, 550, 1834, 1970, 2247, 2729
BfmI CTRYAG 1 cut(s) 738
BfuAI ACCTGC 1 cut(s) 903
BglI GCCNNNNNGGC 2 cut(s) 1649, 3634
BisI GCNGC 6 cut(s) 421, 1015, 2201, 2262, 2265, 2884
BlpI GCTNAGC 1 cut(s) 2097
BlsI GCNGC 6 cut(s) 422, 1016, 2202, 2263, 2266, 2885
BmcAI AGTACT 1 cut(s) 2458
Bme1390I CCNGG 4 cut(s) 184, 280, 1817, 2914
Bme18I GGWCC 4 cut(s) 99, 1208, 1374, 2276
BmeT110I CYCGRG 1 cut(s) 303
BmgBI CACGTC 1 cut(s) 899
BmgT120I GGNCC 7 cut(s) 99, 532, 1208, 1349, 1374, 2276, 3626
BmrFI CCNGG 4 cut(s) 184, 280, 1817, 2914
BmrI ACTGGG 1 cut(s) 2266
BmsI GCATC 5 cut(s) 1197, 1591, 2512, 3412, 3481
BmtI GCTAGC 1 cut(s) 450
BmuI ACTGGG 1 cut(s) 2266
BoxI GACNNNNGTC 2 cut(s) 250, 1846
BpiI GAAGAC 1 cut(s) 250
BplI GAGNNNNNCTC 4 cut(s) 286, 318, 473, 505
BpmI CTGGAG 2 cut(s) 1757, 2943
Bpu10I CCTNAGC 4 cut(s) 615, 655, 1181, 1569
Bpu1102I GCTNAGC 1 cut(s) 2097
BpuEI CTTGAG 1 cut(s) 782
BpuMI CCSGG 1 cut(s) 184
BsaAI YACGTR 1 cut(s) 455
BsaBI GATNNNNATC 1 cut(s) 828
BsaI GGTCTC 2 cut(s) 80, 2729
BsaJI CCNNGG 8 cut(s) 278, 549, 1075, 1211, 1815, 2402, 2426, 3345
BsaWI WCCGGW 1 cut(s) 980
BsaXI ACNNNNNCTCC 8 cut(s) 215, 245, 1288, 1318, 2551, 2581, 3258, 3288
Bsc4I CCNNNNNNNGG 7 cut(s) 1362, 1914, 2377, 2403, 2518, 3155, 3290
Bse3DI GCAATG 3 cut(s) 1035, 1748, 2640
Bse8I GATNNNNATC 1 cut(s) 828
BseBI CCWGG 3 cut(s) 280, 1817, 2914
BseDI CCNNGG 8 cut(s) 278, 549, 1075, 1211, 1815, 2402, 2426, 3345
BseGI GGATG 9 cut(s) 31, 192, 337, 1462, 1532, 2039, 2128, 2491, 2527
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 7 cut(s) 1362, 1914, 2377, 2403, 2518, 3155, 3290
BseMI GCAATG 3 cut(s) 1035, 1748, 2640
BseRI GAGGAG 3 cut(s) 456, 787, 1841
BseSI GKGCMC 1 cut(s) 2990
BseXI GCAGC 3 cut(s) 1026, 2212, 2273
BseYI CCCAGC 3 cut(s) 484, 3391, 3459
Bsh1236I CGCG 1 cut(s) 910
BshFI GGCC 7 cut(s) 182, 533, 1279, 1351, 1698, 3294, 3628
BshNI GGYRCC 3 cut(s) 2266, 2846, 3302
BsiHKAI GWGCWC 2 cut(s) 2663, 3140
BsiHKCI CYCGRG 1 cut(s) 303
BsiSI CCGG 4 cut(s) 183, 329, 366, 981
BslFI GGGAC 7 cut(s) 551, 817, 1241, 1387, 1798, 2717, 3476
BslI CCNNNNNNNGG 7 cut(s) 1362, 1914, 2377, 2403, 2518, 3155, 3290
BsmAI GTCTC 7 cut(s) 80, 436, 550, 1834, 1970, 2247, 2729
BsmFI GGGAC 7 cut(s) 551, 817, 1241, 1387, 1798, 2717, 3476
BsmI GAATGC 2 cut(s) 423, 2098
BsnI GGCC 7 cut(s) 182, 533, 1279, 1351, 1698, 3294, 3628
Bso31I GGTCTC 2 cut(s) 80, 2729
BsoBI CYCGRG 1 cut(s) 303
Bsp1286I GDGCHC 5 cut(s) 491, 980, 2663, 2990, 3140
Bsp143I GATC 7 cut(s) 40, 829, 1174, 1876, 2038, 2959, 3030
Bsp1720I GCTNAGC 1 cut(s) 2097
Bsp19I CCATGG 2 cut(s) 549, 1211
BspANI GGCC 7 cut(s) 182, 533, 1279, 1351, 1698, 3294, 3628
BspFNI CGCG 1 cut(s) 910
BspHI TCATGA 2 cut(s) 688, 1441
BspMAI CTGCAG 1 cut(s) 742
BspMI ACCTGC 1 cut(s) 903
BspOI GCTAGC 1 cut(s) 450
BspPI GGATC 3 cut(s) 35, 1182, 3038
BspQI GCTCTTC 1 cut(s) 723
BspT107I GGYRCC 3 cut(s) 2266, 2846, 3302
BspTNI GGTCTC 2 cut(s) 80, 2729
BsrDI GCAATG 3 cut(s) 1035, 1748, 2640
BssECI CCNNGG 8 cut(s) 278, 549, 1075, 1211, 1815, 2402, 2426, 3345
BssMI GATC 7 cut(s) 40, 829, 1174, 1876, 2038, 2959, 3030
BssSI CACGAG 2 cut(s) 2662, 3453
BssT1I CCWWGG 4 cut(s) 549, 1075, 1211, 2426
Bst2BI CACGAG 2 cut(s) 2662, 3453
Bst2UI CCWGG 3 cut(s) 280, 1817, 2914
Bst4CI ACNGT 9 cut(s) 200, 267, 970, 1245, 2065, 2182, 2286, 2611, 2870
Bst6I CTCTTC 6 cut(s) 83, 156, 638, 723, 868, 1361
BstAPI GCANNNNNTGC 1 cut(s) 709
BstBAI YACGTR 1 cut(s) 455
BstC8I GCNNGC 4 cut(s) 448, 701, 2767, 2881
BstDSI CCRYGG 4 cut(s) 549, 1211, 2402, 3345
BstF5I GGATG 9 cut(s) 31, 192, 337, 1462, 1532, 2039, 2128, 2491, 2527
BstFNI CGCG 1 cut(s) 910
BstHHI GCGC 4 cut(s) 799, 912, 1188, 3183
BstKTI GATC 7 cut(s) 43, 832, 1177, 1879, 2041, 2962, 3033
BstMAI GTCTC 7 cut(s) 80, 436, 550, 1834, 1970, 2247, 2729
BstMBI GATC 7 cut(s) 40, 829, 1174, 1876, 2038, 2959, 3030
BstNI CCWGG 3 cut(s) 280, 1817, 2914
BstNSI RCATGY 3 cut(s) 328, 1454, 3542
BstPAI GACNNNNGTC 2 cut(s) 250, 1846
BstSCI CCNGG 4 cut(s) 182, 278, 1815, 2912
BstSFI CTRYAG 1 cut(s) 738
BstSLI GKGCMC 1 cut(s) 2990
BstUI CGCG 1 cut(s) 910
BstV1I GCAGC 3 cut(s) 1026, 2212, 2273
BstV2I GAAGAC 1 cut(s) 250
BstX2I RGATCY 2 cut(s) 1174, 3030
BstXI CCANNNNNNTGG 2 cut(s) 96, 2481
BstYI RGATCY 2 cut(s) 1174, 3030
BsuRI GGCC 7 cut(s) 182, 533, 1279, 1351, 1698, 3294, 3628
BtgI CCRYGG 4 cut(s) 549, 1211, 2402, 3345
BtgZI GCGATG 1 cut(s) 1174
BtrI CACGTC 1 cut(s) 899
BtsCI GGATG 9 cut(s) 31, 192, 337, 1462, 1532, 2039, 2128, 2491, 2527
BtsI GCAGTG 1 cut(s) 3501
BtsIMutI CAGTG 6 cut(s) 1068, 1953, 2061, 2607, 2857, 3501
BveI ACCTGC 1 cut(s) 903
Cac8I GCNNGC 4 cut(s) 448, 701, 2767, 2881
CciI TCATGA 2 cut(s) 688, 1441
CfoI GCGC 4 cut(s) 799, 912, 1188, 3183
Cfr13I GGNCC 7 cut(s) 99, 532, 1208, 1349, 1374, 2276, 3626
Csp6I GTAC 3 cut(s) 1637, 2361, 2457
CviQI GTAC 3 cut(s) 1637, 2361, 2457
DpnI GATC 7 cut(s) 42, 831, 1176, 1878, 2040, 2961, 3032
DpnII GATC 7 cut(s) 40, 829, 1174, 1876, 2038, 2959, 3030
DraI TTTAAA 2 cut(s) 1105, 2803
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 6 cut(s) 83, 156, 638, 723, 868, 1361
EarI CTCTTC 6 cut(s) 83, 156, 638, 723, 868, 1361
EciI GGCGGA 2 cut(s) 1814, 1936
Eco130I CCWWGG 4 cut(s) 549, 1075, 1211, 2426
Eco24I GRGCYC 2 cut(s) 491, 980
Eco31I GGTCTC 2 cut(s) 80, 2729
Eco47I GGWCC 4 cut(s) 99, 1208, 1374, 2276
Eco57I CTGAAG 5 cut(s) 1302, 2010, 3095, 3451, 3626
Eco72I CACGTG 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 303
EcoO109I RGGNCCY 2 cut(s) 1374, 3626
EcoRI GAATTC 1 cut(s) 1340
EcoRII CCWGG 3 cut(s) 278, 1815, 2912
EcoT14I CCWWGG 4 cut(s) 549, 1075, 1211, 2426
EcoT38I GRGCYC 2 cut(s) 491, 980
ErhI CCWWGG 4 cut(s) 549, 1075, 1211, 2426
FalI AAGNNNNNCTT 2 cut(s) 3536, 3568
FaqI GGGAC 7 cut(s) 551, 817, 1241, 1387, 1798, 2717, 3476
FauI CCCGC 1 cut(s) 2340
FauNDI CATATG 1 cut(s) 2043
FbaI TGATCA 2 cut(s) 829, 2038
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 6 cut(s) 421, 1015, 2201, 2262, 2265, 2884
FokI GGATG 9 cut(s) 38, 199, 344, 1469, 1539, 2046, 2135, 2498, 2534
FriOI GRGCYC 2 cut(s) 491, 980
Fsp4HI GCNGC 6 cut(s) 421, 1015, 2201, 2262, 2265, 2884
FspAI RTGCGCAY 1 cut(s) 3182
FspI TGCGCA 1 cut(s) 3182
GlaI GCGC 4 cut(s) 798, 911, 1187, 3182
GluI GCNGC 6 cut(s) 421, 1015, 2201, 2262, 2265, 2884
GsaI CCCAGC 3 cut(s) 488, 3395, 3463
GsuI CTGGAG 2 cut(s) 1757, 2943
HaeIII GGCC 7 cut(s) 182, 533, 1279, 1351, 1698, 3294, 3628
HapII CCGG 4 cut(s) 183, 329, 366, 981
HhaI GCGC 4 cut(s) 799, 912, 1188, 3183
Hin6I GCGC 4 cut(s) 797, 910, 1186, 3181
HinP1I GCGC 4 cut(s) 797, 910, 1186, 3181
HincII GTYRAC 2 cut(s) 961, 3504
HindII GTYRAC 2 cut(s) 961, 3504
HindIII AAGCTT 2 cut(s) 1992, 2321
HpaI GTTAAC 1 cut(s) 961
HpaII CCGG 4 cut(s) 183, 329, 366, 981
HphI GGTGA 8 cut(s) 850, 1283, 1886, 1970, 2687, 2696, 2941, 3431
Hpy166II GTNNAC 6 cut(s) 196, 961, 1274, 1586, 2022, 3504
Hpy8I GTNNAC 6 cut(s) 196, 961, 1274, 1586, 2022, 3504
Hpy99I CGWCG 3 cut(s) 243, 717, 817
HpyCH4III ACNGT 9 cut(s) 200, 267, 970, 1245, 2065, 2182, 2286, 2611, 2870
HpyCH4IV ACGT 4 cut(s) 238, 454, 477, 898
HpySE526I ACGT 4 cut(s) 238, 454, 477, 898
HspAI GCGC 4 cut(s) 797, 910, 1186, 3181
Ksp22I TGATCA 2 cut(s) 829, 2038
KspAI GTTAAC 1 cut(s) 961
Kzo9I GATC 7 cut(s) 40, 829, 1174, 1876, 2038, 2959, 3030
LguI GCTCTTC 1 cut(s) 723
Lsp1109I GCAGC 3 cut(s) 1026, 2212, 2273
LweI GCATC 5 cut(s) 1197, 1591, 2512, 3412, 3481
MaeII ACGT 4 cut(s) 238, 454, 477, 898
MalI GATC 7 cut(s) 42, 831, 1176, 1878, 2040, 2961, 3032
MboI GATC 7 cut(s) 40, 829, 1174, 1876, 2038, 2959, 3030
MflI RGATCY 2 cut(s) 1174, 3030
MhlI GDGCHC 5 cut(s) 491, 980, 2663, 2990, 3140
MlyI GAGTC 6 cut(s) 407, 751, 1142, 1838, 2479, 3124
MmeI TCCRAC 3 cut(s) 234, 1016, 2982
MroXI GAANNNNTTC 1 cut(s) 3551
MslI CAYNNNNRTG 5 cut(s) 107, 897, 1086, 1455, 2450
MspA1I CMGCKG 4 cut(s) 250, 1017, 2264, 3097
MspI CCGG 4 cut(s) 183, 329, 366, 981
MspR9I CCNGG 4 cut(s) 184, 280, 1817, 2914
MssI GTTTAAAC 1 cut(s) 2803
Mva1269I GAATGC 2 cut(s) 423, 2098
MvaI CCWGG 3 cut(s) 280, 1817, 2914
MvnI CGCG 1 cut(s) 910
NciI CCSGG 1 cut(s) 184
NcoI CCATGG 2 cut(s) 549, 1211
NdeI CATATG 1 cut(s) 2043
NdeII GATC 7 cut(s) 40, 829, 1174, 1876, 2038, 2959, 3030
NheI GCTAGC 1 cut(s) 446
NmuCI GTSAC 4 cut(s) 580, 1079, 2077, 2141
NsbI TGCGCA 1 cut(s) 3182
NspI RCATGY 3 cut(s) 328, 1454, 3542
OliI CACNNNNGTG 1 cut(s) 2450
PagI TCATGA 2 cut(s) 688, 1441
PciI ACATGT 1 cut(s) 1450
PciSI GCTCTTC 1 cut(s) 723
PcsI WCGNNNNNNNCGW 1 cut(s) 1300
PctI GAATGC 2 cut(s) 423, 2098
PdmI GAANNNNTTC 1 cut(s) 3551
PfeI GAWTC 7 cut(s) 685, 1131, 1141, 1299, 1984, 2373, 2855
PflMI CCANNNNNTGG 1 cut(s) 3290
PkrI GCNGC 6 cut(s) 422, 1016, 2202, 2263, 2266, 2885
PleI GAGTC 6 cut(s) 406, 751, 1142, 1837, 2478, 3124
PmaCI CACGTG 1 cut(s) 455
PmeI GTTTAAAC 1 cut(s) 2803
PmlI CACGTG 1 cut(s) 455
PpsI GAGTC 6 cut(s) 406, 751, 1142, 1837, 2478, 3124
Ppu21I YACGTR 1 cut(s) 455
PpuMI RGGWCCY 1 cut(s) 1374
PscI ACATGT 1 cut(s) 1450
PshAI GACNNNNGTC 2 cut(s) 250, 1846
PshBI ATTAAT 2 cut(s) 1407, 1857
Psp5II RGGWCCY 1 cut(s) 1374
Psp6I CCWGG 3 cut(s) 278, 1815, 2912
PspCI CACGTG 1 cut(s) 455
PspFI CCCAGC 3 cut(s) 484, 3391, 3459
PspGI CCWGG 3 cut(s) 278, 1815, 2912
PspPI GGNCC 7 cut(s) 99, 532, 1208, 1349, 1374, 2276, 3626
PspPPI RGGWCCY 1 cut(s) 1374
PstI CTGCAG 1 cut(s) 742
PsuI RGATCY 2 cut(s) 1174, 3030
PvuII CAGCTG 1 cut(s) 250
RsaI GTAC 3 cut(s) 1638, 2362, 2458
RsaNI GTAC 3 cut(s) 1637, 2361, 2457
RseI CAYNNNNRTG 5 cut(s) 107, 897, 1086, 1455, 2450
SapI GCTCTTC 1 cut(s) 723
SatI GCNGC 6 cut(s) 421, 1015, 2201, 2262, 2265, 2884
Sau3AI GATC 7 cut(s) 40, 829, 1174, 1876, 2038, 2959, 3030
Sau96I GGNCC 7 cut(s) 99, 532, 1208, 1349, 1374, 2276, 3626
ScaI AGTACT 1 cut(s) 2458
SchI GAGTC 6 cut(s) 407, 751, 1142, 1838, 2479, 3124
ScrFI CCNGG 4 cut(s) 184, 280, 1817, 2914
SduI GDGCHC 5 cut(s) 491, 980, 2663, 2990, 3140
SfaNI GCATC 5 cut(s) 1197, 1591, 2512, 3412, 3481
SfcI CTRYAG 1 cut(s) 738
SinI GGWCC 4 cut(s) 99, 1208, 1374, 2276
SmiMI CAYNNNNRTG 5 cut(s) 107, 897, 1086, 1455, 2450
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
StyD4I CCNGG 4 cut(s) 182, 278, 1815, 2912
StyI CCWWGG 4 cut(s) 549, 1075, 1211, 2426
TaaI ACNGT 9 cut(s) 200, 267, 970, 1245, 2065, 2182, 2286, 2611, 2870
TaiI ACGT 4 cut(s) 241, 457, 480, 901
TaqI TCGA 5 cut(s) 145, 241, 401, 1832, 2413
TatI WGTACW 1 cut(s) 2456
TauI GCSGC 3 cut(s) 423, 2267, 2886
TfiI GAWTC 7 cut(s) 685, 1131, 1141, 1299, 1984, 2373, 2855
TscAI CASTG 6 cut(s) 1068, 1960, 2068, 2614, 2857, 3501
TseFI GTSAC 4 cut(s) 580, 1079, 2077, 2141
TseI GCWGC 3 cut(s) 1014, 2200, 2261
Tsp45I GTSAC 4 cut(s) 580, 1079, 2077, 2141
TspGWI ACGGA 6 cut(s) 219, 353, 1292, 2129, 2391, 3362
TspRI CASTG 6 cut(s) 1068, 1960, 2068, 2614, 2857, 3501
Van91I CCANNNNNTGG 1 cut(s) 3290
VpaK11BI GGWCC 4 cut(s) 99, 1208, 1374, 2276
VspI ATTAAT 2 cut(s) 1407, 1857
XbaI TCTAGA 1 cut(s) 1850
XceI RCATGY 3 cut(s) 328, 1454, 3542
XmiI GTMKAC 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 3551
ZrmI AGTACT 1 cut(s) 2458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.