Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 59 - 179 | 1.1e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 502 |
| AciI | CCGC | 6 cut(s) | 163, 188, 263, 425, 428, 502 |
| AcsI | RAATTY | 2 cut(s) | 19, 477 |
| AfaI | GTAC | 2 cut(s) | 71, 494 |
| AflIII | ACRYGT | 1 cut(s) | 495 |
| AgsI | TTSAA | 3 cut(s) | 19, 91, 355 |
| AjiI | CACGTC | 1 cut(s) | 498 |
| AluBI | AGCT | 7 cut(s) | 201, 248, 293, 351, 397, 472, 590 |
| AluI | AGCT | 7 cut(s) | 201, 248, 293, 351, 397, 472, 590 |
| Alw21I | GWGCWC | 1 cut(s) | 36 |
| Alw26I | GTCTC | 2 cut(s) | 304, 365 |
| AoxI | GGCC | 1 cut(s) | 189 |
| ApeKI | GCWGC | 2 cut(s) | 260, 394 |
| ApoI | RAATTY | 2 cut(s) | 19, 477 |
| AseI | ATTAAT | 1 cut(s) | 402 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 450 |
| AsuHPI | GGTGA | 3 cut(s) | 121, 349, 593 |
| Bbv12I | GWGCWC | 1 cut(s) | 36 |
| BbvI | GCAGC | 2 cut(s) | 247, 406 |
| BccI | CCATC | 4 cut(s) | 131, 176, 323, 606 |
| BclI | TGATCA | 1 cut(s) | 486 |
| BcoDI | GTCTC | 2 cut(s) | 304, 365 |
| BfaI | CTAG | 2 cut(s) | 284, 464 |
| BisI | GCNGC | 4 cut(s) | 189, 261, 395, 426 |
| BlsI | GCNGC | 4 cut(s) | 190, 262, 396, 427 |
| BmgBI | CACGTC | 1 cut(s) | 498 |
| Bpu10I | CCTNAGC | 1 cut(s) | 202 |
| BsaAI | YACGTR | 1 cut(s) | 73 |
| BsaI | GGTCTC | 1 cut(s) | 304 |
| BseGI | GGATG | 1 cut(s) | 581 |
| BseMII | CTCAG | 1 cut(s) | 216 |
| BseXI | GCAGC | 2 cut(s) | 247, 406 |
| BsgI | GTGCAG | 1 cut(s) | 413 |
| Bsh1236I | CGCG | 1 cut(s) | 502 |
| BshFI | GGCC | 1 cut(s) | 191 |
| BsiHKAI | GWGCWC | 1 cut(s) | 36 |
| BsmAI | GTCTC | 2 cut(s) | 304, 365 |
| BsmI | GAATGC | 1 cut(s) | 581 |
| BsnI | GGCC | 1 cut(s) | 191 |
| Bso31I | GGTCTC | 1 cut(s) | 304 |
| Bsp1286I | GDGCHC | 1 cut(s) | 36 |
| Bsp143I | GATC | 1 cut(s) | 486 |
| BspACI | CCGC | 6 cut(s) | 163, 188, 263, 425, 428, 502 |
| BspANI | GGCC | 1 cut(s) | 191 |
| BspCNI | CTCAG | 1 cut(s) | 215 |
| BspFNI | CGCG | 1 cut(s) | 502 |
| BspTNI | GGTCTC | 1 cut(s) | 304 |
| BssMI | GATC | 1 cut(s) | 486 |
| Bst6I | CTCTTC | 1 cut(s) | 441 |
| BstBAI | YACGTR | 1 cut(s) | 73 |
| BstDEI | CTNAG | 2 cut(s) | 202, 586 |
| BstF5I | GGATG | 1 cut(s) | 581 |
| BstFNI | CGCG | 1 cut(s) | 502 |
| BstKTI | GATC | 1 cut(s) | 489 |
| BstMAI | GTCTC | 2 cut(s) | 304, 365 |
| BstMBI | GATC | 1 cut(s) | 486 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 524, 587 |
| BstNSI | RCATGY | 2 cut(s) | 40, 122 |
| BstUI | CGCG | 1 cut(s) | 502 |
| BstV1I | GCAGC | 2 cut(s) | 247, 406 |
| BsuRI | GGCC | 1 cut(s) | 191 |
| BtrI | CACGTC | 1 cut(s) | 498 |
| BtsCI | GGATG | 1 cut(s) | 581 |
| BtsI | GCAGTG | 1 cut(s) | 396 |
| BtsIMutI | CAGTG | 2 cut(s) | 396, 489 |
| Csp6I | GTAC | 2 cut(s) | 70, 493 |
| CviAII | CATG | 7 cut(s) | 5, 37, 41, 77, 119, 524, 593 |
| CviQI | GTAC | 2 cut(s) | 70, 493 |
| DdeI | CTNAG | 2 cut(s) | 202, 586 |
| DpnI | GATC | 1 cut(s) | 488 |
| DpnII | GATC | 1 cut(s) | 486 |
| DraI | TTTAAA | 2 cut(s) | 24, 60 |
| Eam1104I | CTCTTC | 1 cut(s) | 441 |
| EarI | CTCTTC | 1 cut(s) | 441 |
| EciI | GGCGGA | 1 cut(s) | 443 |
| Eco31I | GGTCTC | 1 cut(s) | 304 |
| EcoT22I | ATGCAT | 3 cut(s) | 6, 42, 120 |
| FaeI | CATG | 7 cut(s) | 8, 40, 44, 80, 122, 527, 596 |
| FatI | CATG | 7 cut(s) | 4, 36, 40, 76, 118, 523, 592 |
| FauI | CCCGC | 2 cut(s) | 156, 256 |
| FbaI | TGATCA | 1 cut(s) | 486 |
| Fnu4HI | GCNGC | 4 cut(s) | 189, 261, 395, 426 |
| FokI | GGATG | 1 cut(s) | 588 |
| Fsp4HI | GCNGC | 4 cut(s) | 189, 261, 395, 426 |
| FspBI | CTAG | 2 cut(s) | 284, 464 |
| GluI | GCNGC | 4 cut(s) | 189, 261, 395, 426 |
| HaeIII | GGCC | 1 cut(s) | 191 |
| Hin1II | CATG | 7 cut(s) | 8, 40, 44, 80, 122, 527, 596 |
| HindIII | AAGCTT | 1 cut(s) | 349 |
| HinfI | GANTC | 2 cut(s) | 451, 457 |
| HphI | GGTGA | 3 cut(s) | 121, 349, 593 |
| Hpy166II | GTNNAC | 1 cut(s) | 495 |
| Hpy188I | TCNGA | 4 cut(s) | 136, 196, 304, 456 |
| Hpy8I | GTNNAC | 1 cut(s) | 495 |
| Hpy99I | CGWCG | 1 cut(s) | 502 |
| HpyAV | CCTTC | 2 cut(s) | 334, 425 |
| HpyCH4IV | ACGT | 2 cut(s) | 72, 497 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 40, 76, 118, 389, 394, 527, 533, 581 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 524, 587 |
| HpyF3I | CTNAG | 2 cut(s) | 202, 586 |
| HpySE526I | ACGT | 2 cut(s) | 72, 497 |
| Hsp92II | CATG | 7 cut(s) | 8, 40, 44, 80, 122, 527, 596 |
| Ksp22I | TGATCA | 1 cut(s) | 486 |
| Kzo9I | GATC | 1 cut(s) | 486 |
| LmnI | GCTCC | 2 cut(s) | 31, 245 |
| LpnPI | CCDG | 2 cut(s) | 189, 203 |
| Lsp1109I | GCAGC | 2 cut(s) | 247, 406 |
| MaeI | CTAG | 2 cut(s) | 284, 464 |
| MaeII | ACGT | 2 cut(s) | 72, 497 |
| MalI | GATC | 1 cut(s) | 488 |
| MboI | GATC | 1 cut(s) | 486 |
| MboII | GAAGA | 2 cut(s) | 452, 458 |
| MhlI | GDGCHC | 1 cut(s) | 36 |
| MluCI | AATT | 5 cut(s) | 19, 175, 273, 305, 477 |
| MmeI | TCCRAC | 1 cut(s) | 309 |
| Mph1103I | ATGCAT | 3 cut(s) | 6, 42, 120 |
| MroXI | GAANNNNTTC | 1 cut(s) | 450 |
| MseI | TTAA | 5 cut(s) | 23, 59, 279, 383, 402 |
| MslI | CAYNNNNRTG | 1 cut(s) | 39 |
| Mva1269I | GAATGC | 1 cut(s) | 581 |
| MvnI | CGCG | 1 cut(s) | 502 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 524, 587 |
| NdeII | GATC | 1 cut(s) | 486 |
| NlaIII | CATG | 7 cut(s) | 8, 40, 44, 80, 122, 527, 596 |
| NsiI | ATGCAT | 3 cut(s) | 6, 42, 120 |
| NspI | RCATGY | 2 cut(s) | 40, 122 |
| PctI | GAATGC | 1 cut(s) | 581 |
| PdmI | GAANNNNTTC | 1 cut(s) | 450 |
| PfeI | GAWTC | 2 cut(s) | 451, 457 |
| PkrI | GCNGC | 4 cut(s) | 190, 262, 396, 427 |
| Ppu21I | YACGTR | 1 cut(s) | 73 |
| PshBI | ATTAAT | 1 cut(s) | 402 |
| RsaI | GTAC | 2 cut(s) | 71, 494 |
| RsaNI | GTAC | 2 cut(s) | 70, 493 |
| RseI | CAYNNNNRTG | 1 cut(s) | 39 |
| SaqAI | TTAA | 5 cut(s) | 23, 59, 279, 383, 402 |
| SatI | GCNGC | 4 cut(s) | 189, 261, 395, 426 |
| Sau3AI | GATC | 1 cut(s) | 486 |
| SduI | GDGCHC | 1 cut(s) | 36 |
| SmiI | ATTTAAAT | 1 cut(s) | 24 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 39 |
| Sse9I | AATT | 5 cut(s) | 19, 175, 273, 305, 477 |
| SsiI | CCGC | 6 cut(s) | 163, 188, 263, 425, 428, 502 |
| SspMI | CTAG | 2 cut(s) | 284, 464 |
| SwaI | ATTTAAAT | 1 cut(s) | 24 |
| TaiI | ACGT | 2 cut(s) | 75, 500 |
| TasI | AATT | 5 cut(s) | 19, 175, 273, 305, 477 |
| TatI | WGTACW | 1 cut(s) | 492 |
| TauI | GCSGC | 2 cut(s) | 191, 428 |
| TfiI | GAWTC | 2 cut(s) | 451, 457 |
| Tru1I | TTAA | 5 cut(s) | 23, 59, 279, 383, 402 |
| Tru9I | TTAA | 5 cut(s) | 23, 59, 279, 383, 402 |
| TscAI | CASTG | 2 cut(s) | 396, 489 |
| TseI | GCWGC | 2 cut(s) | 260, 394 |
| TspDTI | ATGAA | 2 cut(s) | 188, 512 |
| TspRI | CASTG | 2 cut(s) | 396, 489 |
| VspI | ATTAAT | 1 cut(s) | 402 |
| XapI | RAATTY | 2 cut(s) | 19, 477 |
| XceI | RCATGY | 2 cut(s) | 40, 122 |
| XmnI | GAANNNNTTC | 1 cut(s) | 450 |
| XspI | CTAG | 2 cut(s) | 284, 464 |
| Zsp2I | ATGCAT | 3 cut(s) | 6, 42, 120 |