ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 36 |
| AccII | CGCG | 1 cut(s) | 552 |
| AciI | CCGC | 1 cut(s) | 59 |
| AclWI | GGATC | 3 cut(s) | 208, 519, 704 |
| AcsI | RAATTY | 2 cut(s) | 261, 346 |
| AcuI | CTGAAG | 2 cut(s) | 90, 248 |
| AfeI | AGCGCT | 1 cut(s) | 75 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 36, 379 |
| AgsI | TTSAA | 5 cut(s) | 137, 172, 212, 242, 462 |
| AluBI | AGCT | 5 cut(s) | 18, 80, 127, 236, 287 |
| AluI | AGCT | 5 cut(s) | 18, 80, 127, 236, 287 |
| AlwI | GGATC | 3 cut(s) | 208, 519, 704 |
| Aor51HI | AGCGCT | 1 cut(s) | 75 |
| ApeKI | GCWGC | 2 cut(s) | 146, 284 |
| ApoI | RAATTY | 2 cut(s) | 261, 346 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 525, 557 |
| AspLEI | GCGC | 1 cut(s) | 76 |
| AspS9I | GGNCC | 1 cut(s) | 382 |
| AsuHPI | GGTGA | 1 cut(s) | 460 |
| AsuNHI | GCTAGC | 1 cut(s) | 76 |
| AvaII | GGWCC | 1 cut(s) | 382 |
| BbvI | GCAGC | 2 cut(s) | 158, 296 |
| BccI | CCATC | 1 cut(s) | 662 |
| BfaI | CTAG | 2 cut(s) | 77, 585 |
| BfmI | CTRYAG | 2 cut(s) | 625, 733 |
| BfoI | RGCGCY | 1 cut(s) | 77 |
| BisI | GCNGC | 2 cut(s) | 147, 285 |
| BlsI | GCNGC | 2 cut(s) | 148, 286 |
| Bme18I | GGWCC | 1 cut(s) | 382 |
| BmgT120I | GGNCC | 1 cut(s) | 382 |
| BmiI | GGNNCC | 1 cut(s) | 383 |
| BmsI | GCATC | 2 cut(s) | 35, 133 |
| BmtI | GCTAGC | 1 cut(s) | 80 |
| BpmI | CTGGAG | 1 cut(s) | 149 |
| BpuEI | CTTGAG | 3 cut(s) | 345, 419, 500 |
| BsaBI | GATNNNNATC | 1 cut(s) | 451 |
| BsaJI | CCNNGG | 1 cut(s) | 639 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 36, 379 |
| Bse3DI | GCAATG | 2 cut(s) | 385, 705 |
| Bse8I | GATNNNNATC | 1 cut(s) | 451 |
| BseDI | CCNNGG | 1 cut(s) | 639 |
| BseGI | GGATG | 1 cut(s) | 26 |
| BseJI | GATNNNNATC | 1 cut(s) | 451 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 36, 379 |
| BseMI | GCAATG | 2 cut(s) | 385, 705 |
| BseMII | CTCAG | 2 cut(s) | 280, 365 |
| BseRI | GAGGAG | 1 cut(s) | 348 |
| BseXI | GCAGC | 2 cut(s) | 158, 296 |
| BsgI | GTGCAG | 1 cut(s) | 303 |
| Bsh1236I | CGCG | 1 cut(s) | 552 |
| BslFI | GGGAC | 1 cut(s) | 395 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 36, 379 |
| BsmFI | GGGAC | 1 cut(s) | 395 |
| Bsp143I | GATC | 6 cut(s) | 184, 200, 446, 511, 709, 718 |
| Bsp19I | CCATGG | 1 cut(s) | 639 |
| Bsp68I | TCGCGA | 1 cut(s) | 552 |
| BspACI | CCGC | 1 cut(s) | 59 |
| BspCNI | CTCAG | 2 cut(s) | 279, 364 |
| BspFNI | CGCG | 1 cut(s) | 552 |
| BspLI | GGNNCC | 1 cut(s) | 383 |
| BspOI | GCTAGC | 1 cut(s) | 80 |
| BspPI | GGATC | 3 cut(s) | 208, 519, 704 |
| BsrDI | GCAATG | 2 cut(s) | 385, 705 |
| BssECI | CCNNGG | 1 cut(s) | 639 |
| BssMI | GATC | 6 cut(s) | 184, 200, 446, 511, 709, 718 |
| BssT1I | CCWWGG | 1 cut(s) | 639 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 314 |
| BstC8I | GCNNGC | 4 cut(s) | 63, 78, 234, 439 |
| BstDEI | CTNAG | 3 cut(s) | 45, 266, 351 |
| BstDSI | CCRYGG | 1 cut(s) | 639 |
| BstF5I | GGATG | 1 cut(s) | 26 |
| BstFNI | CGCG | 1 cut(s) | 552 |
| BstH2I | RGCGCY | 1 cut(s) | 77 |
| BstHHI | GCGC | 1 cut(s) | 76 |
| BstKTI | GATC | 6 cut(s) | 187, 203, 449, 514, 712, 721 |
| BstMBI | GATC | 6 cut(s) | 184, 200, 446, 511, 709, 718 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 71, 305, 314 |
| BstNSI | RCATGY | 2 cut(s) | 65, 441 |
| BstSFI | CTRYAG | 2 cut(s) | 625, 733 |
| BstUI | CGCG | 1 cut(s) | 552 |
| BstV1I | GCAGC | 2 cut(s) | 158, 296 |
| BstX2I | RGATCY | 2 cut(s) | 200, 511 |
| BstYI | RGATCY | 2 cut(s) | 200, 511 |
| BtgI | CCRYGG | 1 cut(s) | 639 |
| BtsCI | GGATG | 1 cut(s) | 26 |
| BtsIMutI | CAGTG | 1 cut(s) | 41 |
| BtuMI | TCGCGA | 1 cut(s) | 552 |
| Cac8I | GCNNGC | 4 cut(s) | 63, 78, 234, 439 |
| CfoI | GCGC | 1 cut(s) | 76 |
| Cfr13I | GGNCC | 1 cut(s) | 382 |
| CseI | GACGC | 1 cut(s) | 454 |
| CviAII | CATG | 4 cut(s) | 62, 392, 438, 640 |
| DdeI | CTNAG | 3 cut(s) | 45, 266, 351 |
| DpnI | GATC | 6 cut(s) | 186, 202, 448, 513, 711, 720 |
| DpnII | GATC | 6 cut(s) | 184, 200, 446, 511, 709, 718 |
| Eco130I | CCWWGG | 1 cut(s) | 639 |
| Eco32I | GATATC | 1 cut(s) | 159 |
| Eco47I | GGWCC | 1 cut(s) | 382 |
| Eco47III | AGCGCT | 1 cut(s) | 75 |
| Eco57I | CTGAAG | 2 cut(s) | 90, 248 |
| EcoRV | GATATC | 1 cut(s) | 159 |
| EcoT14I | CCWWGG | 1 cut(s) | 639 |
| EcoT22I | ATGCAT | 1 cut(s) | 28 |
| ErhI | CCWWGG | 1 cut(s) | 639 |
| FaeI | CATG | 4 cut(s) | 65, 395, 441, 643 |
| FaqI | GGGAC | 1 cut(s) | 395 |
| FatI | CATG | 4 cut(s) | 61, 391, 437, 639 |
| Fnu4HI | GCNGC | 2 cut(s) | 147, 285 |
| FokI | GGATG | 1 cut(s) | 13 |
| Fsp4HI | GCNGC | 2 cut(s) | 147, 285 |
| FspBI | CTAG | 2 cut(s) | 77, 585 |
| GlaI | GCGC | 1 cut(s) | 75 |
| GluI | GCNGC | 2 cut(s) | 147, 285 |
| GsuI | CTGGAG | 1 cut(s) | 149 |
| HaeII | RGCGCY | 1 cut(s) | 77 |
| HgaI | GACGC | 1 cut(s) | 454 |
| HhaI | GCGC | 1 cut(s) | 76 |
| Hin1II | CATG | 4 cut(s) | 65, 395, 441, 643 |
| Hin6I | GCGC | 1 cut(s) | 74 |
| HinP1I | GCGC | 1 cut(s) | 74 |
| HindIII | AAGCTT | 1 cut(s) | 234 |
| HinfI | GANTC | 3 cut(s) | 41, 423, 547 |
| HphI | GGTGA | 1 cut(s) | 460 |
| Hpy188I | TCNGA | 3 cut(s) | 269, 303, 691 |
| Hpy188III | TCNNGA | 8 cut(s) | 176, 226, 362, 517, 544, 551, 670, 722 |
| Hpy99I | CGWCG | 1 cut(s) | 695 |
| HpyAV | CCTTC | 2 cut(s) | 191, 676 |
| HpyCH4IV | ACGT | 1 cut(s) | 635 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 11, 26, 146, 276, 284, 317, 441 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 71, 305, 314 |
| HpyF3I | CTNAG | 3 cut(s) | 45, 266, 351 |
| HpySE526I | ACGT | 1 cut(s) | 635 |
| Hsp92II | CATG | 4 cut(s) | 65, 395, 441, 643 |
| HspAI | GCGC | 1 cut(s) | 74 |
| Kzo9I | GATC | 6 cut(s) | 184, 200, 446, 511, 709, 718 |
| LmnI | GCTCC | 2 cut(s) | 15, 695 |
| LpnPI | CCDG | 2 cut(s) | 113, 239 |
| Lsp1109I | GCAGC | 2 cut(s) | 158, 296 |
| LweI | GCATC | 2 cut(s) | 35, 133 |
| MaeI | CTAG | 2 cut(s) | 77, 585 |
| MaeII | ACGT | 1 cut(s) | 635 |
| MaeIII | GTNAC | 1 cut(s) | 466 |
| MalI | GATC | 6 cut(s) | 186, 202, 448, 513, 711, 720 |
| MboI | GATC | 6 cut(s) | 184, 200, 446, 511, 709, 718 |
| MboII | GAAGA | 3 cut(s) | 224, 254, 502 |
| MflI | RGATCY | 2 cut(s) | 200, 511 |
| MmeI | TCCRAC | 1 cut(s) | 714 |
| MnlI | CCTC | 6 cut(s) | 172, 249, 366, 369, 582, 614 |
| Mph1103I | ATGCAT | 1 cut(s) | 28 |
| MseI | TTAA | 4 cut(s) | 21, 120, 249, 338 |
| MslI | CAYNNNNRTG | 1 cut(s) | 390 |
| MvnI | CGCG | 1 cut(s) | 552 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 71, 305, 314 |
| NcoI | CCATGG | 1 cut(s) | 639 |
| NdeII | GATC | 6 cut(s) | 184, 200, 446, 511, 709, 718 |
| NheI | GCTAGC | 1 cut(s) | 76 |
| NlaIII | CATG | 4 cut(s) | 65, 395, 441, 643 |
| NlaIV | GGNNCC | 1 cut(s) | 383 |
| NmuCI | GTSAC | 1 cut(s) | 466 |
| NruI | TCGCGA | 1 cut(s) | 552 |
| NsiI | ATGCAT | 1 cut(s) | 28 |
| NspI | RCATGY | 2 cut(s) | 65, 441 |
| PaeI | GCATGC | 2 cut(s) | 65, 441 |
| PfeI | GAWTC | 3 cut(s) | 41, 423, 547 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 36 |
| PkrI | GCNGC | 2 cut(s) | 148, 286 |
| PspN4I | GGNNCC | 1 cut(s) | 383 |
| PspPI | GGNCC | 1 cut(s) | 382 |
| PsuI | RGATCY | 2 cut(s) | 200, 511 |
| RruI | TCGCGA | 1 cut(s) | 552 |
| RseI | CAYNNNNRTG | 1 cut(s) | 390 |
| SaqAI | TTAA | 4 cut(s) | 21, 120, 249, 338 |
| SatI | GCNGC | 2 cut(s) | 147, 285 |
| Sau3AI | GATC | 6 cut(s) | 184, 200, 446, 511, 709, 718 |
| Sau96I | GGNCC | 1 cut(s) | 382 |
| SetI | ASST | 9 cut(s) | 20, 82, 129, 183, 238, 289, 399, 638, 668 |
| SfaNI | GCATC | 2 cut(s) | 35, 133 |
| SfcI | CTRYAG | 2 cut(s) | 625, 733 |
| SinI | GGWCC | 1 cut(s) | 382 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 390 |
| SmlI | CTYRAG | 3 cut(s) | 360, 398, 515 |
| SmoI | CTYRAG | 3 cut(s) | 360, 398, 515 |
| SphI | GCATGC | 2 cut(s) | 65, 441 |
| SsiI | CCGC | 1 cut(s) | 59 |
| SspMI | CTAG | 2 cut(s) | 77, 585 |
| StyI | CCWWGG | 1 cut(s) | 639 |
| TaiI | ACGT | 1 cut(s) | 638 |
| TaqI | TCGA | 2 cut(s) | 421, 723 |
| TfiI | GAWTC | 3 cut(s) | 41, 423, 547 |
| Tru1I | TTAA | 4 cut(s) | 21, 120, 249, 338 |
| Tru9I | TTAA | 4 cut(s) | 21, 120, 249, 338 |
| TscAI | CASTG | 1 cut(s) | 41 |
| TseFI | GTSAC | 1 cut(s) | 466 |
| TseI | GCWGC | 2 cut(s) | 146, 284 |
| Tsp45I | GTSAC | 1 cut(s) | 466 |
| TspDTI | ATGAA | 2 cut(s) | 110, 716 |
| TspGWI | ACGGA | 1 cut(s) | 708 |
| TspRI | CASTG | 1 cut(s) | 41 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 36 |
| VpaK11BI | GGWCC | 1 cut(s) | 382 |
| XapI | RAATTY | 2 cut(s) | 261, 346 |
| XceI | RCATGY | 2 cut(s) | 65, 441 |
| XspI | CTAG | 2 cut(s) | 77, 585 |
| Zsp2I | ATGCAT | 1 cut(s) | 28 |