Rorug03G0150100

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000072
Physical Location & Seq
Forward (+)
12376101 .. 12382280
6180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0150100.1

Sequence Viewer

Length: 3192 bp
ATGGGGAAAGGAGGTGAGGATTTCGGTAAGCGAGAGAAGGCGGCGGGGCCTACGACGTCGTCGGATCGCGATGCGTTTCCGGCGTGGAGTAAGGAGATTCATGAGTGCGAGAAGCACTTCGGCGTGAGCCGGAAGTTAGGGCTGACGTCGGCGGAGGTGGCGAAGCGGCGGGAGGAGTACGGGTGGAACGAGTTGGAGAAGCTCGAGGGGCAGTCGATTTGGAGTCTGGTGCTCGACCAGTTCAACGATACTCTGGTGCGGATCCTGCTCGCCGCGGCGGTCATCTCGTTTGTGCTGGCGTGGTTGGACGGGGAGGAAGGCGGTGAGAAGGAGATCACGGCGTTTGTGGAGCCGTTGGTGATCTTTTTGATTCTGATTGTGAACGCGATTGTTGGGGTTTGGCAGGAGAGCAATGCCGAGAAGGCGCTGGAGGCGCTTAAGGAGATTCAGTCGGAGCAGGCGACTGTGATTCGGAATGGGAGTAAGGTTCCGAATTTGCCGGCGAAGGAGCTTGTTCCCGGAGATATTGTGGAGCTTAAGGTTGGGGATAAGGTTCCGGCTGATATGCGTGTAGTGGAGTTGATTAGCTCGACCTTGAGGATTGAGCAGGGTTCGTTGACTGGAGAGAGTGAGGCTGTGAATAAGACTAACAAGCCGGTTCCGGAGGATGCTGATATTCAGGGGAAGCAGTCTATGGTGTTTGCCGGGACGACTGTTGTGAATGGGAATTGCATTTGCTTGGTTGCCCAGACCGGAATGGCCACCGAGATTGGGAAGGTGCATACGCAAATTCATGTGGCTTCACAGAGTGAGGAAGACACTCCGTTGAAGAAGAAGCTTAATGAGTTTGGGGAGATGCTCACTATGATAATTGGAGTGATTTGTGCATTGGTGTGGCTCATCAATGTCAAGTACTTCCTCACTTGGGAATATGTTGATGGGATGCCGAGGAACTTCAAGTTTTCATTTGAGAAGTGCACTTATTACTTTGAGATTGCAGTGGCACTGGCTGTGGCTGCTATTCCTGAAGGTTTGCCAGCAGTCATCACTACCTGCTTGGCACTTGGTACCCGCAAAATGGCTCAGAAGAATGCCTTGGTTAGAAAGCTTCCCAGTGTTGAAACTCTGGGTTGTACCACAGTCATTTGTTCTGACAAAACAGGGACCTTGACTACGAACCAAATGGCAGTTTCCAGGCTTGTAGCTTTGGGTCCTAGACCAACTATACTACGGAAGTTTAAGGTGGATGGGACTACTTACAATCCAGCAGATGGCAAAATTAATGACTGGCCAAGTGGACGTATGGATACTAATCTTCAAACGATTGCAAAGGTAGCTGCTGTCTGTAATGATGCTGGTATTACCCAATCAGAACAGAAGTATGTTGCCCATGGAATGCCTACCGAGGCAGCTCTTAAGGTTTTAGTTGAGAAGATGGGGCTTCCTGAAGCATCTCGAGGTGTGGGATCAAGTAAAACTGATTTACTAGGTTGTTGCAAGCACTGGAATGAATCTGAGCGCCGAGTTGCAACTCTTGAGTTTGATCGTGATAGGAAATCTATGGGTGTCATTGCCACCTCCCGTTTGGGGAAAAATTCTTTGCTAGTGAAGGGTGCTGTAGAAAATGTGTTGGAGAGAAGCACTCAGGTTCAGTTGCTTGATGGAACTGTTGTACGACTAGATAATAACTCGAGGAACTACATCTTACAAGCTCTTAATGAGATGTCATCTGATGCACTACGTTGTCTGGGATTTGCATATAAAGATGACTTGGCTGACTTTGAGTCCTATGATGGTGATGAGCATCCAGCTCACAAGCAATTACTTGATCCATCCAATTATTCATCAATAGAGAGCGAACTTGTTTTTGTTGGCTTGGTTGGACTGAGGGATCCACCAAGAGAGGAGGTTTTTGATGCAATTGAAGATTGCCGTGCAGCAGGAATTCGTGTTATGGTAATTACTGGAGATAACAAGAACACAGCAGAAGCTATATGTCGTGAAATAGGTGTTTTTGGTACTCATGAAGACATAAGTAAAAGAAGCATAACAGGAAGAGAGTTTATGAATCTGCCTGATCAGAAAGCCTTTCTGAGACAAGGTGGTGGGCTACTCTTTTCAAGGGCTGAACCAAGGCACAAACAAGAGATTGTGAGGTTGCTGAAAGATGAAGGTGAGGTGGTTGCCATGACTGGTGATGGAGTAAATGATGCACCTGCATTGAAACTTGCTGATATTGGAATTGCAATGGGCATTGCTGGAACCGAGGTTGCAAAGGAAGCTTCCGACATGGTTTTGGCAGATGATAATTTCAGCACAATTGTTGCTGCTGTTGGTGAGGGCAGATCTATCTACAACAACATGAAGGCCTTTATCAGGTACATGATCTCCTCCAATATTGGTGAGGTTGCATCTATATTCCTTACAGCAGCATTGGGCATTCCTGAAGGGCTCATCCCTGTCCAGCTTTTGTGGGTCAATCTTGTCACTGATGGGCCACCTGCAACAGCATTAGGATTTAATCCTCCGGACAAGGACATAATGAAGAAACCCCCACGCAGAAGTGATGATTCACTGATCAGCGCGTGGATATTGTTCCGATATTTGGTAATTGGGTTGTATGTTGGAGTAGCAACAGTCGGCGTATTCATAATTTGGTATACTCATAGTTCCTTCATGGGTATCGACCTCAGTGGGGATGGCCACTCCCTTGTTACTTACTCCCAACTTGCCAACTGGGGACAGTGCTCAACTTGGCAGAACTTTACTGCTTCACCTTTCACAGCTGGAAGTGAGGTTATCTCGTTTGACAAAAACCCATGCGATTATTTCCATGGCGGCAAAGTTAAGGCTATGACCCTCTCCCTCTCTGTGTTGGTTGCCATCGAAATGTTCAACTCGCTCAATGCCCTTTCTGAGGATGGAAGCCTGTTGTCAATGCCTCCATGGGTCAACCCTTGGCTCCTTGTGGCCATGTCTGTTTCATTCGGCCTTCATTTCTTGATCCTGTATGTGCCTTTCCTAGCTCAAATATTCGGCATTGTACCCCTGAGTCTAAACGAATGGCTGTTGGTTTTGGCCGTTTCATTGCCGGTGATTCTCATTGATGAGATCCTCAAGTTAGTCGGCAGATGGACAAGCAAGTCTCAAATACCCAGGAGGAGAAAACCATCAAAGCCCAAGGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

1063

Amino Acids

116.21

Weight (kDa)

5.4

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 29 - 96 6.7e-20 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 149 - 263 4.2e-24 P-type ATPase actuator domain
Cation_ATPase PF13246 439 - 636 4e-41 P-type ATPase, cytoplasmic domain N
Hydrolase PF00702 623 - 745 7e-15 haloacid dehalogenase-like hydrolase
Cation_ATPase_C PF00689 817 - 1042 6e-50 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 2224, 2509
AasI GACNNNNNNGTC 1 cut(s) 3142
AatII GACGTC 2 cut(s) 59, 149
Acc36I ACCTGC 3 cut(s) 1061, 2224, 2509
Acc65I GGTACC 1 cut(s) 1067
AccB1I GGYRCC 1 cut(s) 1067
AccB7I CCANNNNNTGG 1 cut(s) 1271
AccI GTMKAC 1 cut(s) 2660
AccII CGCG 4 cut(s) 69, 275, 386, 2585
AccIII TCCGGA 2 cut(s) 661, 2527
AclWI GGATC 9 cut(s) 72, 256, 269, 1474, 1823, 1886, 1899, 2998, 3106
AcoI YGGCCR 5 cut(s) 759, 1289, 2701, 2970, 3078
AcsI RAATTY 4 cut(s) 493, 789, 1594, 1944
AcuI CTGAAG 3 cut(s) 1047, 1467, 2466
AcyI GRCGYC 2 cut(s) 56, 146
AdeI CACNNNGTG 1 cut(s) 809
AfaI GTAC 8 cut(s) 179, 914, 1069, 1135, 1674, 2020, 2381, 3045
AfiI CCNNNNNNNGG 9 cut(s) 771, 925, 1078, 1271, 1587, 2376, 2605, 2695, 2917
AflII CTTAAG 3 cut(s) 437, 536, 1415
AgsI TTSAA 9 cut(s) 244, 829, 958, 1121, 1319, 1925, 2121, 2224, 2896
AhdI GACNNNNNGTC 1 cut(s) 1783
AjnI CCWGG 2 cut(s) 1193, 3155
AjuI GAANNNNNNNTTGG 2 cut(s) 1079, 1111
Alw21I GWGCWC 3 cut(s) 234, 980, 2750
Alw26I GTCTC 2 cut(s) 2089, 3150
Alw44I GTGCAC 1 cut(s) 976
AlwI GGATC 9 cut(s) 72, 256, 269, 1474, 1823, 1886, 1899, 2998, 3106
Ama87I CYCGRG 3 cut(s) 203, 1455, 1690
Aor13HI TCCGGA 2 cut(s) 661, 2527
AoxI GGCC 9 cut(s) 47, 759, 1289, 2367, 2495, 2701, 2970, 2989, 3078
ApaLI GTGCAC 1 cut(s) 976
ApeKI GCWGC 6 cut(s) 1016, 1337, 1409, 1937, 2327, 2429
ApoI RAATTY 4 cut(s) 493, 789, 1594, 1944
AseI ATTAAT 1 cut(s) 1281
Asp700I GAANNNNTTC 1 cut(s) 116
Asp718I GGTACC 1 cut(s) 1067
AspLEI GCGC 4 cut(s) 427, 436, 1521, 2585
AspS9I GGNCC 4 cut(s) 47, 1164, 1211, 2495
AsuC2I CCSGG 2 cut(s) 519, 706
AvaI CYCGRG 3 cut(s) 203, 1455, 1690
AvaII GGWCC 2 cut(s) 1164, 1211
BaeGI GKGCMC 1 cut(s) 980
BaeI ACNNNNGTAYC 2 cut(s) 240, 273
BalI TGGCCA 4 cut(s) 761, 1291, 2703, 2972
BamHI GGATCC 2 cut(s) 261, 1891
BanI GGYRCC 1 cut(s) 1067
BanII GRGCYC 1 cut(s) 2454
BbsI GAAGAC 2 cut(s) 822, 2034
Bbv12I GWGCWC 3 cut(s) 234, 980, 2750
BbvI GCAGC 6 cut(s) 1003, 1324, 1421, 1949, 2314, 2441
BceAI ACGGC 4 cut(s) 337, 354, 1917, 3065
BciT130I CCWGG 2 cut(s) 1195, 3157
BciVI GTATCC 1 cut(s) 1300
BclI TGATCA 2 cut(s) 2077, 2577
BcnI CCSGG 2 cut(s) 519, 706
BcoDI GTCTC 2 cut(s) 2089, 3150
BfaI CTAG 5 cut(s) 1215, 1487, 1604, 1679, 3023
BfmI CTRYAG 1 cut(s) 1617
BfoI RGCGCY 3 cut(s) 428, 437, 1522
BfrI CTTAAG 3 cut(s) 437, 536, 1415
BfuAI ACCTGC 3 cut(s) 1061, 2224, 2509
BfuI GTATCC 1 cut(s) 1300
BglI GCCNNNNNGGC 1 cut(s) 422
BglII AGATCT 1 cut(s) 2345
BmcAI AGTACT 1 cut(s) 914
Bme1390I CCNGG 4 cut(s) 519, 706, 1195, 3157
Bme18I GGWCC 2 cut(s) 1164, 1211
BmeRI GACNNNNNGTC 1 cut(s) 1783
BmeT110I CYCGRG 3 cut(s) 203, 1455, 1690
BmgT120I GGNCC 4 cut(s) 47, 1164, 1211, 2495
BmrFI CCNGG 4 cut(s) 519, 706, 1195, 3157
BmrI ACTGGG 2 cut(s) 1107, 2746
BmuI ACTGGG 2 cut(s) 1107, 2746
BpiI GAAGAC 2 cut(s) 822, 2034
BplI GAGNNNNNCTC 4 cut(s) 1627, 1659, 2786, 2818
BpmI CTGGAG 3 cut(s) 449, 642, 1986
BpuEI CTTGAG 3 cut(s) 616, 1556, 3101
BpuMI CCSGG 2 cut(s) 519, 706
BsaBI GATNNNNATC 2 cut(s) 1311, 1803
BsaHI GRCGYC 2 cut(s) 56, 146
BsaWI WCCGGW 3 cut(s) 661, 752, 2527
BsaXI ACNNNNNCTCC 8 cut(s) 167, 197, 434, 464, 513, 543, 2372, 2402
Bsc4I CCNNNNNNNGG 9 cut(s) 771, 925, 1078, 1271, 1587, 2376, 2605, 2695, 2917
Bse118I RCCGGY 3 cut(s) 499, 655, 3091
Bse1I ACTGG 9 cut(s) 238, 625, 1011, 1113, 1292, 1508, 1969, 2197, 2741
Bse3DI GCAATG 5 cut(s) 418, 1569, 2253, 2253, 3086
Bse8I GATNNNNATC 2 cut(s) 1311, 1803
BseAI TCCGGA 2 cut(s) 661, 2527
BseBI CCWGG 2 cut(s) 1195, 3157
BseGI GGATG 8 cut(s) 673, 948, 1252, 1804, 1832, 2454, 2704, 2926
BseJI GATNNNNATC 2 cut(s) 1311, 1803
BseLI CCNNNNNNNGG 9 cut(s) 771, 925, 1078, 1271, 1587, 2376, 2605, 2695, 2917
BseMI GCAATG 5 cut(s) 418, 1569, 2253, 2253, 3086
BseMII CTCAG 8 cut(s) 1097, 1506, 1658, 1877, 2084, 2704, 2907, 3041
BseNI ACTGG 9 cut(s) 238, 625, 1011, 1113, 1292, 1508, 1969, 2197, 2741
BseRI GAGGAG 4 cut(s) 188, 1919, 2380, 3175
BseSI GKGCMC 1 cut(s) 980
BseXI GCAGC 6 cut(s) 1003, 1324, 1421, 1949, 2314, 2441
BsgI GTGCAG 1 cut(s) 1956
Bsh1236I CGCG 4 cut(s) 69, 275, 386, 2585
BshFI GGCC 9 cut(s) 49, 761, 1291, 2369, 2497, 2703, 2972, 2991, 3080
BshNI GGYRCC 1 cut(s) 1067
BsiHKAI GWGCWC 3 cut(s) 234, 980, 2750
BsiHKCI CYCGRG 3 cut(s) 203, 1455, 1690
BslFI GGGAC 4 cut(s) 721, 1177, 1264, 2754
BslI CCNNNNNNNGG 9 cut(s) 771, 925, 1078, 1271, 1587, 2376, 2605, 2695, 2917
BsmAI GTCTC 2 cut(s) 2089, 3150
BsmFI GGGAC 4 cut(s) 721, 1177, 1264, 2754
BsmI GAATGC 3 cut(s) 1096, 1401, 2439
BsnI GGCC 9 cut(s) 49, 761, 1291, 2369, 2497, 2703, 2972, 2991, 3080
BsoBI CYCGRG 3 cut(s) 203, 1455, 1690
Bsp1286I GDGCHC 4 cut(s) 234, 980, 2454, 2750
Bsp13I TCCGGA 2 cut(s) 661, 2527
Bsp19I CCATGG 3 cut(s) 1390, 2833, 2945
Bsp68I TCGCGA 1 cut(s) 69
BspANI GGCC 9 cut(s) 49, 761, 1291, 2369, 2497, 2703, 2972, 2991, 3080
BspCNI CTCAG 8 cut(s) 1096, 1507, 1657, 1878, 2085, 2703, 2908, 3042
BspEI TCCGGA 2 cut(s) 661, 2527
BspFNI CGCG 4 cut(s) 69, 275, 386, 2585
BspHI TCATGA 2 cut(s) 100, 2023
BspMI ACCTGC 3 cut(s) 1061, 2224, 2509
BspPI GGATC 9 cut(s) 72, 256, 269, 1474, 1823, 1886, 1899, 2998, 3106
BspT107I GGYRCC 1 cut(s) 1067
BspTI CTTAAG 3 cut(s) 437, 536, 1415
BsrDI GCAATG 5 cut(s) 418, 1569, 2253, 2253, 3086
BsrFI RCCGGY 3 cut(s) 499, 655, 3091
BsrI ACTGG 9 cut(s) 238, 625, 1011, 1113, 1292, 1508, 1969, 2197, 2741
BssAI RCCGGY 3 cut(s) 499, 655, 3091
BssNAI GTATAC 1 cut(s) 2661
BssNI GRCGYC 2 cut(s) 56, 146
BssT1I CCWWGG 7 cut(s) 1095, 1390, 2132, 2833, 2945, 2957, 3180
Bst1107I GTATAC 1 cut(s) 2661
Bst2UI CCWGG 2 cut(s) 1195, 3157
Bst4CI ACNGT 6 cut(s) 466, 715, 1141, 1669, 2638, 2745
Bst6I CTCTTC 1 cut(s) 2050
BstACI GRCGYC 2 cut(s) 56, 146
BstAFI CTTAAG 3 cut(s) 437, 536, 1415
BstC8I GCNNGC 6 cut(s) 270, 297, 459, 501, 1038, 1499
BstDEI CTNAG 8 cut(s) 1083, 1515, 1644, 1886, 2093, 2690, 2916, 3050
BstDSI CCRYGG 4 cut(s) 273, 1390, 2833, 2945
BstENI CCTNNNNNAGG 2 cut(s) 2374, 2915
BstF5I GGATG 8 cut(s) 673, 948, 1252, 1804, 1832, 2454, 2704, 2926
BstFNI CGCG 4 cut(s) 69, 275, 386, 2585
BstH2I RGCGCY 3 cut(s) 428, 437, 1522
BstHHI GCGC 4 cut(s) 427, 436, 1521, 2585
BstMAI GTCTC 2 cut(s) 2089, 3150
BstNI CCWGG 2 cut(s) 1195, 3157
BstSCI CCNGG 4 cut(s) 517, 704, 1193, 3155
BstSFI CTRYAG 1 cut(s) 1617
BstSLI GKGCMC 1 cut(s) 980
BstUI CGCG 4 cut(s) 69, 275, 386, 2585
BstV1I GCAGC 6 cut(s) 1003, 1324, 1421, 1949, 2314, 2441
BstV2I GAAGAC 2 cut(s) 822, 2034
BstX2I RGATCY 4 cut(s) 261, 1891, 2345, 3111
BstYI RGATCY 4 cut(s) 261, 1891, 2345, 3111
BstZ17I GTATAC 1 cut(s) 2661
BsuI GTATCC 1 cut(s) 1300
BsuRI GGCC 9 cut(s) 49, 761, 1291, 2369, 2497, 2703, 2972, 2991, 3080
BtgI CCRYGG 4 cut(s) 273, 1390, 2833, 2945
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 8 cut(s) 673, 948, 1252, 1804, 1832, 2454, 2704, 2926
BtsI GCAGTG 1 cut(s) 1005
BtsIMutI CAGTG 8 cut(s) 1004, 1005, 1120, 1501, 2487, 2573, 2698, 2750
BtuMI TCGCGA 1 cut(s) 69
BveI ACCTGC 3 cut(s) 1061, 2224, 2509
Cac8I GCNNGC 6 cut(s) 270, 297, 459, 501, 1038, 1499
CciI TCATGA 2 cut(s) 100, 2023
CfoI GCGC 4 cut(s) 427, 436, 1521, 2585
Cfr10I RCCGGY 3 cut(s) 499, 655, 3091
Cfr13I GGNCC 4 cut(s) 47, 1164, 1211, 2495
Cfr42I CCGCGG 1 cut(s) 276
Csp6I GTAC 8 cut(s) 178, 913, 1068, 1134, 1673, 2019, 2380, 3044
CspCI CAANNNNNGTGG 2 cut(s) 751, 786
CviQI GTAC 8 cut(s) 178, 913, 1068, 1134, 1673, 2019, 2380, 3044
DdeI CTNAG 8 cut(s) 1083, 1515, 1644, 1886, 2093, 2690, 2916, 3050
DraIII CACNNNGTG 1 cut(s) 809
DrdI GACNNNNNNGTC 1 cut(s) 3142
DriI GACNNNNNGTC 1 cut(s) 1783
DseDI GACNNNNNNGTC 1 cut(s) 3142
EaeI YGGCCR 5 cut(s) 759, 1289, 2701, 2970, 3078
Eam1104I CTCTTC 1 cut(s) 2050
Eam1105I GACNNNNNGTC 1 cut(s) 1783
EarI CTCTTC 1 cut(s) 2050
EciI GGCGGA 1 cut(s) 167
Eco130I CCWWGG 7 cut(s) 1095, 1390, 2132, 2833, 2945, 2957, 3180
Eco147I AGGCCT 1 cut(s) 2369
Eco24I GRGCYC 1 cut(s) 2454
Eco47I GGWCC 2 cut(s) 1164, 1211
Eco57I CTGAAG 3 cut(s) 1047, 1467, 2466
Eco88I CYCGRG 3 cut(s) 203, 1455, 1690
EcoNI CCTNNNNNAGG 2 cut(s) 2374, 2915
EcoO109I RGGNCCY 3 cut(s) 47, 1164, 1211
EcoRI GAATTC 1 cut(s) 1944
EcoRII CCWGG 2 cut(s) 1193, 3155
EcoT14I CCWWGG 7 cut(s) 1095, 1390, 2132, 2833, 2945, 2957, 3180
EcoT38I GRGCYC 1 cut(s) 2454
ErhI CCWWGG 7 cut(s) 1095, 1390, 2132, 2833, 2945, 2957, 3180
FalI AAGNNNNNCTT 2 cut(s) 1079, 1111
FaqI GGGAC 4 cut(s) 721, 1177, 1264, 2754
FauI CCCGC 3 cut(s) 37, 162, 1079
FbaI TGATCA 2 cut(s) 2077, 2577
FblI GTMKAC 1 cut(s) 2660
FokI GGATG 8 cut(s) 680, 955, 1259, 1791, 1819, 2441, 2711, 2933
FriOI GRGCYC 1 cut(s) 2454
FspBI CTAG 5 cut(s) 1215, 1487, 1604, 1679, 3023
GlaI GCGC 4 cut(s) 426, 435, 1520, 2584
GsuI CTGGAG 3 cut(s) 449, 642, 1986
HaeII RGCGCY 3 cut(s) 428, 437, 1522
HaeIII GGCC 9 cut(s) 49, 761, 1291, 2369, 2497, 2703, 2972, 2991, 3080
HhaI GCGC 4 cut(s) 427, 436, 1521, 2585
Hin1I GRCGYC 2 cut(s) 56, 146
Hin6I GCGC 4 cut(s) 425, 434, 1519, 2583
HinP1I GCGC 4 cut(s) 425, 434, 1519, 2583
HincII GTYRAC 2 cut(s) 618, 2953
HindII GTYRAC 2 cut(s) 618, 2953
HindIII AAGCTT 3 cut(s) 836, 1106, 2280
Hpy166II GTNNAC 6 cut(s) 382, 618, 978, 1298, 2661, 2953
Hpy8I GTNNAC 6 cut(s) 382, 618, 978, 1298, 2661, 2953
Hpy99I CGWCG 4 cut(s) 58, 61, 64, 151
HpyCH4III ACNGT 6 cut(s) 466, 715, 1141, 1669, 2638, 2745
HpyCH4IV ACGT 4 cut(s) 56, 146, 1300, 1741
HpyF3I CTNAG 8 cut(s) 1083, 1515, 1644, 1886, 2093, 2690, 2916, 3050
HpySE526I ACGT 4 cut(s) 56, 146, 1300, 1741
Hsp92I GRCGYC 2 cut(s) 56, 146
HspAI GCGC 4 cut(s) 425, 434, 1519, 2583
Kpn2I TCCGGA 2 cut(s) 661, 2527
KpnI GGTACC 1 cut(s) 1071
KroI GCCGGC 1 cut(s) 499
KroNI GCCGGC 1 cut(s) 501
Ksp22I TGATCA 2 cut(s) 2077, 2577
KspI CCGCGG 1 cut(s) 276
LmnI GCTCC 5 cut(s) 349, 454, 508, 532, 2967
Lsp1109I GCAGC 6 cut(s) 1003, 1324, 1421, 1949, 2314, 2441
MaeI CTAG 5 cut(s) 1215, 1487, 1604, 1679, 3023
MaeII ACGT 4 cut(s) 56, 146, 1300, 1741
MaeIII GTNAC 2 cut(s) 2485, 2713
MfeI CAATTG 2 cut(s) 1920, 2319
MflI RGATCY 4 cut(s) 261, 1891, 2345, 3111
MhlI GDGCHC 4 cut(s) 234, 980, 2454, 2750
MlsI TGGCCA 4 cut(s) 761, 1291, 2703, 2972
MluNI TGGCCA 4 cut(s) 761, 1291, 2703, 2972
MlyI GAGTC 3 cut(s) 232, 1793, 3061
MmeI TCCRAC 8 cut(s) 42, 174, 285, 432, 1611, 1861, 2310, 2605
Mox20I TGGCCA 4 cut(s) 761, 1291, 2703, 2972
MroI TCCGGA 2 cut(s) 661, 2527
MroNI GCCGGC 1 cut(s) 499
MroXI GAANNNNTTC 1 cut(s) 116
MscI TGGCCA 4 cut(s) 761, 1291, 2703, 2972
MseI TTAA 9 cut(s) 438, 537, 840, 1239, 1281, 1416, 1716, 2520, 2847
MslI CAYNNNNRTG 3 cut(s) 892, 1506, 2888
Msp20I TGGCCA 4 cut(s) 761, 1291, 2703, 2972
MspA1I CMGCKG 2 cut(s) 275, 2786
MspCI CTTAAG 3 cut(s) 437, 536, 1415
MspR9I CCNGG 4 cut(s) 519, 706, 1195, 3157
MunI CAATTG 2 cut(s) 1920, 2319
Mva1269I GAATGC 3 cut(s) 1096, 1401, 2439
MvaI CCWGG 2 cut(s) 1195, 3157
MvnI CGCG 4 cut(s) 69, 275, 386, 2585
NaeI GCCGGC 1 cut(s) 501
NciI CCSGG 2 cut(s) 519, 706
NcoI CCATGG 3 cut(s) 1390, 2833, 2945
NgoMIV GCCGGC 1 cut(s) 499
NmeAIII GCCGAG 3 cut(s) 442, 972, 1547
NmuCI GTSAC 1 cut(s) 2485
NruI TCGCGA 1 cut(s) 69
PaeR7I CTCGAG 3 cut(s) 203, 1455, 1690
PagI TCATGA 2 cut(s) 100, 2023
PaqCI CACCTGC 2 cut(s) 2224, 2509
PceI AGGCCT 1 cut(s) 2369
PcsI WCGNNNNNNNCGW 2 cut(s) 186, 458
PctI GAATGC 3 cut(s) 1096, 1401, 2439
PdiI GCCGGC 1 cut(s) 501
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 8 cut(s) 97, 370, 445, 469, 1511, 2068, 2570, 3097
PflFI GACNNNGTC 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 1271
PfoI TCCNGGA 1 cut(s) 517
PleI GAGTC 3 cut(s) 231, 1792, 3060
PpsI GAGTC 3 cut(s) 231, 1792, 3060
PpuMI RGGWCCY 2 cut(s) 1164, 1211
PshBI ATTAAT 1 cut(s) 1281
Psp5II RGGWCCY 2 cut(s) 1164, 1211
Psp6I CCWGG 2 cut(s) 1193, 3155
PspGI CCWGG 2 cut(s) 1193, 3155
PspPI GGNCC 4 cut(s) 47, 1164, 1211, 2495
PspPPI RGGWCCY 2 cut(s) 1164, 1211
PspXI VCTCGAGB 2 cut(s) 203, 1690
PsuI RGATCY 4 cut(s) 261, 1891, 2345, 3111
PsyI GACNNNGTC 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 2786
RruI TCGCGA 1 cut(s) 69
RsaI GTAC 8 cut(s) 179, 914, 1069, 1135, 1674, 2020, 2381, 3045
RsaNI GTAC 8 cut(s) 178, 913, 1068, 1134, 1673, 2019, 2380, 3044
RseI CAYNNNNRTG 3 cut(s) 892, 1506, 2888
SacII CCGCGG 1 cut(s) 276
SaqAI TTAA 9 cut(s) 438, 537, 840, 1239, 1281, 1416, 1716, 2520, 2847
Sau96I GGNCC 4 cut(s) 47, 1164, 1211, 2495
ScaI AGTACT 1 cut(s) 914
SchI GAGTC 3 cut(s) 232, 1793, 3061
ScrFI CCNGG 4 cut(s) 519, 706, 1195, 3157
SduI GDGCHC 4 cut(s) 234, 980, 2454, 2750
SfcI CTRYAG 1 cut(s) 1617
Sfr274I CTCGAG 3 cut(s) 203, 1455, 1690
Sfr303I CCGCGG 1 cut(s) 276
SgrBI CCGCGG 1 cut(s) 276
SinI GGWCC 2 cut(s) 1164, 1211
SlaI CTCGAG 3 cut(s) 203, 1455, 1690
SmiMI CAYNNNNRTG 3 cut(s) 892, 1506, 2888
SmlI CTYRAG 9 cut(s) 203, 437, 536, 595, 1415, 1455, 1535, 1690, 3116
SmoI CTYRAG 9 cut(s) 203, 437, 536, 595, 1415, 1455, 1535, 1690, 3116
SseBI AGGCCT 1 cut(s) 2369
SspI AATATT 2 cut(s) 2398, 3033
SspMI CTAG 5 cut(s) 1215, 1487, 1604, 1679, 3023
StuI AGGCCT 1 cut(s) 2369
StyD4I CCNGG 4 cut(s) 517, 704, 1193, 3155
StyI CCWWGG 7 cut(s) 1095, 1390, 2132, 2833, 2945, 2957, 3180
TaaI ACNGT 6 cut(s) 466, 715, 1141, 1669, 2638, 2745
TaiI ACGT 4 cut(s) 59, 149, 1303, 1744
TaqI TCGA 8 cut(s) 204, 215, 234, 590, 1456, 1691, 2685, 2886
TatI WGTACW 1 cut(s) 912
TauI GCSGC 5 cut(s) 44, 169, 275, 278, 2841
TfiI GAWTC 8 cut(s) 97, 370, 445, 469, 1511, 2068, 2570, 3097
Tru1I TTAA 9 cut(s) 438, 537, 840, 1239, 1281, 1416, 1716, 2520, 2847
Tru9I TTAA 9 cut(s) 438, 537, 840, 1239, 1281, 1416, 1716, 2520, 2847
TscAI CASTG 8 cut(s) 1005, 1011, 1120, 1508, 2494, 2580, 2698, 2750
TseFI GTSAC 1 cut(s) 2485
TseI GCWGC 6 cut(s) 1016, 1337, 1409, 1937, 2327, 2429
Tsp45I GTSAC 1 cut(s) 2485
TspGWI ACGGA 2 cut(s) 813, 1246
TspRI CASTG 8 cut(s) 1005, 1011, 1120, 1508, 2494, 2580, 2698, 2750
Tth111I GACNNNGTC 1 cut(s) 58
Van91I CCANNNNNTGG 1 cut(s) 1271
Vha464I CTTAAG 3 cut(s) 437, 536, 1415
VneI GTGCAC 1 cut(s) 976
VpaK11BI GGWCC 2 cut(s) 1164, 1211
VspI ATTAAT 1 cut(s) 1281
XagI CCTNNNNNAGG 2 cut(s) 2374, 2915
XapI RAATTY 4 cut(s) 493, 789, 1594, 1944
XcmI CCANNNNNNNNNTGG 1 cut(s) 1582
XhoI CTCGAG 3 cut(s) 203, 1455, 1690
XmiI GTMKAC 1 cut(s) 2660
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 5 cut(s) 1215, 1487, 1604, 1679, 3023
ZraI GACGTC 2 cut(s) 57, 147
ZrmI AGTACT 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.