Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 390 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 254 |
| AatII | GACGTC | 1 cut(s) | 36 |
| AccII | CGCG | 1 cut(s) | 141 |
| AciI | CCGC | 5 cut(s) | 70, 139, 141, 299, 350 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 176 |
| AcyI | GRCGYC | 2 cut(s) | 33, 249 |
| AgsI | TTSAA | 2 cut(s) | 124, 229 |
| AluBI | AGCT | 4 cut(s) | 214, 232, 371, 445 |
| AluI | AGCT | 4 cut(s) | 214, 232, 371, 445 |
| Alw26I | GTCTC | 1 cut(s) | 105 |
| Ama87I | CYCGRG | 1 cut(s) | 192 |
| AoxI | GGCC | 3 cut(s) | 3, 133, 407 |
| ApeKI | GCWGC | 2 cut(s) | 211, 240 |
| ApoI | RAATTY | 1 cut(s) | 176 |
| AspLEI | GCGC | 1 cut(s) | 240 |
| AsuHPI | GGTGA | 4 cut(s) | 208, 316, 415, 472 |
| AvaI | CYCGRG | 1 cut(s) | 192 |
| BbsI | GAAGAC | 1 cut(s) | 442 |
| BbvI | GCAGC | 2 cut(s) | 223, 227 |
| BccI | CCATC | 3 cut(s) | 74, 125, 167 |
| BceAI | ACGGC | 1 cut(s) | 169 |
| BcoDI | GTCTC | 1 cut(s) | 105 |
| BfaI | CTAG | 1 cut(s) | 381 |
| BfoI | RGCGCY | 1 cut(s) | 241 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 141 |
| BisI | GCNGC | 5 cut(s) | 142, 212, 241, 299, 350 |
| BlsI | GCNGC | 5 cut(s) | 143, 213, 242, 300, 351 |
| BmeT110I | CYCGRG | 1 cut(s) | 192 |
| BmiI | GGNNCC | 2 cut(s) | 157, 313 |
| BpiI | GAAGAC | 1 cut(s) | 442 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 191, 223, 406, 438 |
| Bpu10I | CCTNAGC | 1 cut(s) | 446 |
| BpuEI | CTTGAG | 1 cut(s) | 437 |
| BsaHI | GRCGYC | 2 cut(s) | 33, 249 |
| BsaI | GGTCTC | 1 cut(s) | 105 |
| BsaJI | CCNNGG | 4 cut(s) | 130, 139, 193, 410 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 246, 276 |
| BseDI | CCNNGG | 4 cut(s) | 130, 139, 193, 410 |
| BseGI | GGATG | 2 cut(s) | 44, 66 |
| BseRI | GAGGAG | 1 cut(s) | 29 |
| BseXI | GCAGC | 2 cut(s) | 223, 227 |
| Bsh1236I | CGCG | 1 cut(s) | 141 |
| BshFI | GGCC | 3 cut(s) | 5, 135, 409 |
| BsiHKCI | CYCGRG | 1 cut(s) | 192 |
| BsiSI | CCGG | 1 cut(s) | 252 |
| BsmAI | GTCTC | 1 cut(s) | 105 |
| BsnI | GGCC | 3 cut(s) | 5, 135, 409 |
| Bso31I | GGTCTC | 1 cut(s) | 105 |
| BsoBI | CYCGRG | 1 cut(s) | 192 |
| Bsp143I | GATC | 1 cut(s) | 464 |
| Bsp19I | CCATGG | 2 cut(s) | 130, 410 |
| BspACI | CCGC | 5 cut(s) | 70, 139, 141, 299, 350 |
| BspANI | GGCC | 3 cut(s) | 5, 135, 409 |
| BspFNI | CGCG | 1 cut(s) | 141 |
| BspHI | TCATGA | 1 cut(s) | 108 |
| BspLI | GGNNCC | 2 cut(s) | 157, 313 |
| BspTNI | GGTCTC | 1 cut(s) | 105 |
| BssECI | CCNNGG | 4 cut(s) | 130, 139, 193, 410 |
| BssMI | GATC | 1 cut(s) | 464 |
| BssNI | GRCGYC | 2 cut(s) | 33, 249 |
| BssT1I | CCWWGG | 2 cut(s) | 130, 410 |
| BstACI | GRCGYC | 2 cut(s) | 33, 249 |
| BstC8I | GCNNGC | 1 cut(s) | 200 |
| BstDEI | CTNAG | 1 cut(s) | 446 |
| BstDSI | CCRYGG | 3 cut(s) | 130, 139, 410 |
| BstF5I | GGATG | 2 cut(s) | 44, 66 |
| BstFNI | CGCG | 1 cut(s) | 141 |
| BstH2I | RGCGCY | 1 cut(s) | 241 |
| BstHHI | GCGC | 1 cut(s) | 240 |
| BstKTI | GATC | 1 cut(s) | 467 |
| BstMAI | GTCTC | 1 cut(s) | 105 |
| BstMBI | GATC | 1 cut(s) | 464 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 141, 188, 208 |
| BstUI | CGCG | 1 cut(s) | 141 |
| BstV1I | GCAGC | 2 cut(s) | 223, 227 |
| BstV2I | GAAGAC | 1 cut(s) | 442 |
| BsuRI | GGCC | 3 cut(s) | 5, 135, 409 |
| BtgI | CCRYGG | 3 cut(s) | 130, 139, 410 |
| BtsCI | GGATG | 2 cut(s) | 44, 66 |
| Cac8I | GCNNGC | 1 cut(s) | 200 |
| CciI | TCATGA | 1 cut(s) | 108 |
| CfoI | GCGC | 1 cut(s) | 240 |
| Cfr42I | CCGCGG | 1 cut(s) | 142 |
| CseI | GACGC | 1 cut(s) | 257 |
| CviAII | CATG | 7 cut(s) | 19, 61, 109, 131, 277, 411, 474 |
| DdeI | CTNAG | 1 cut(s) | 446 |
| DpnI | GATC | 1 cut(s) | 466 |
| DpnII | GATC | 1 cut(s) | 464 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 254 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 254 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| EciI | GGCGGA | 1 cut(s) | 59 |
| Eco130I | CCWWGG | 2 cut(s) | 130, 410 |
| Eco31I | GGTCTC | 1 cut(s) | 105 |
| Eco88I | CYCGRG | 1 cut(s) | 192 |
| EcoT14I | CCWWGG | 2 cut(s) | 130, 410 |
| ErhI | CCWWGG | 2 cut(s) | 130, 410 |
| FaeI | CATG | 7 cut(s) | 22, 64, 112, 134, 280, 414, 477 |
| FatI | CATG | 7 cut(s) | 18, 60, 108, 130, 276, 410, 473 |
| FauNDI | CATATG | 1 cut(s) | 50 |
| Fnu4HI | GCNGC | 5 cut(s) | 142, 212, 241, 299, 350 |
| FokI | GGATG | 2 cut(s) | 31, 53 |
| Fsp4HI | GCNGC | 5 cut(s) | 142, 212, 241, 299, 350 |
| FspBI | CTAG | 1 cut(s) | 381 |
| GlaI | GCGC | 1 cut(s) | 239 |
| GluI | GCNGC | 5 cut(s) | 142, 212, 241, 299, 350 |
| HaeII | RGCGCY | 1 cut(s) | 241 |
| HaeIII | GGCC | 3 cut(s) | 5, 135, 409 |
| HapII | CCGG | 1 cut(s) | 252 |
| HgaI | GACGC | 1 cut(s) | 257 |
| HhaI | GCGC | 1 cut(s) | 240 |
| Hin1I | GRCGYC | 2 cut(s) | 33, 249 |
| Hin1II | CATG | 7 cut(s) | 22, 64, 112, 134, 280, 414, 477 |
| Hin6I | GCGC | 1 cut(s) | 238 |
| HinP1I | GCGC | 1 cut(s) | 238 |
| HincII | GTYRAC | 1 cut(s) | 151 |
| HindII | GTYRAC | 1 cut(s) | 151 |
| HinfI | GANTC | 3 cut(s) | 77, 255, 360 |
| HpaII | CCGG | 1 cut(s) | 252 |
| HphI | GGTGA | 4 cut(s) | 208, 316, 415, 472 |
| Hpy166II | GTNNAC | 1 cut(s) | 151 |
| Hpy188I | TCNGA | 4 cut(s) | 223, 316, 426, 469 |
| Hpy188III | TCNNGA | 3 cut(s) | 109, 364, 454 |
| Hpy8I | GTNNAC | 1 cut(s) | 151 |
| Hpy99I | CGWCG | 1 cut(s) | 251 |
| HpyAV | CCTTC | 1 cut(s) | 451 |
| HpyCH4IV | ACGT | 2 cut(s) | 33, 147 |
| HpyCH4V | TGCA | 2 cut(s) | 54, 479 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 141, 188, 208 |
| HpyF3I | CTNAG | 1 cut(s) | 446 |
| HpySE526I | ACGT | 2 cut(s) | 33, 147 |
| Hsp92I | GRCGYC | 2 cut(s) | 33, 249 |
| Hsp92II | CATG | 7 cut(s) | 22, 64, 112, 134, 280, 414, 477 |
| HspAI | GCGC | 1 cut(s) | 238 |
| KspI | CCGCGG | 1 cut(s) | 142 |
| Kzo9I | GATC | 1 cut(s) | 464 |
| LmnI | GCTCC | 2 cut(s) | 161, 317 |
| LpnPI | CCDG | 5 cut(s) | 42, 82, 183, 220, 265 |
| Lsp1109I | GCAGC | 2 cut(s) | 223, 227 |
| MaeI | CTAG | 1 cut(s) | 381 |
| MaeII | ACGT | 2 cut(s) | 33, 147 |
| MalI | GATC | 1 cut(s) | 466 |
| MboI | GATC | 1 cut(s) | 464 |
| MboII | GAAGA | 3 cut(s) | 112, 347, 447 |
| MluCI | AATT | 2 cut(s) | 176, 391 |
| MlyI | GAGTC | 1 cut(s) | 264 |
| MmeI | TCCRAC | 1 cut(s) | 339 |
| MslI | CAYNNNNRTG | 1 cut(s) | 49 |
| MspA1I | CMGCKG | 1 cut(s) | 141 |
| MspI | CCGG | 1 cut(s) | 252 |
| MvnI | CGCG | 1 cut(s) | 141 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 141, 188, 208 |
| NcoI | CCATGG | 2 cut(s) | 130, 410 |
| NdeI | CATATG | 1 cut(s) | 50 |
| NdeII | GATC | 1 cut(s) | 464 |
| NlaIII | CATG | 7 cut(s) | 22, 64, 112, 134, 280, 414, 477 |
| NlaIV | GGNNCC | 2 cut(s) | 157, 313 |
| PagI | TCATGA | 1 cut(s) | 108 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 195 |
| PfeI | GAWTC | 2 cut(s) | 77, 360 |
| PkrI | GCNGC | 5 cut(s) | 143, 213, 242, 300, 351 |
| PleI | GAGTC | 1 cut(s) | 263 |
| PpsI | GAGTC | 1 cut(s) | 263 |
| PsiI | TTATAA | 1 cut(s) | 390 |
| PspN4I | GGNNCC | 2 cut(s) | 157, 313 |
| RseI | CAYNNNNRTG | 1 cut(s) | 49 |
| SacII | CCGCGG | 1 cut(s) | 142 |
| SatI | GCNGC | 5 cut(s) | 142, 212, 241, 299, 350 |
| Sau3AI | GATC | 1 cut(s) | 464 |
| SchI | GAGTC | 1 cut(s) | 264 |
| Sfr303I | CCGCGG | 1 cut(s) | 142 |
| SgrBI | CCGCGG | 1 cut(s) | 142 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 49 |
| SmlI | CTYRAG | 1 cut(s) | 452 |
| SmoI | CTYRAG | 1 cut(s) | 452 |
| Sse9I | AATT | 2 cut(s) | 176, 391 |
| SsiI | CCGC | 5 cut(s) | 70, 139, 141, 299, 350 |
| SspMI | CTAG | 1 cut(s) | 381 |
| StyI | CCWWGG | 2 cut(s) | 130, 410 |
| TaiI | ACGT | 2 cut(s) | 36, 150 |
| TaqI | TCGA | 3 cut(s) | 75, 358, 365 |
| TasI | AATT | 2 cut(s) | 176, 391 |
| TauI | GCSGC | 3 cut(s) | 144, 301, 352 |
| TfiI | GAWTC | 2 cut(s) | 77, 360 |
| TseI | GCWGC | 2 cut(s) | 211, 240 |
| TspDTI | ATGAA | 1 cut(s) | 82 |
| XapI | RAATTY | 1 cut(s) | 176 |
| XspI | CTAG | 1 cut(s) | 381 |
| ZraI | GACGTC | 1 cut(s) | 34 |