Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 116 - 164 | 1.2e-07 | PPR repeat family |
| PPR | PF01535 | 120 - 147 | 4.5e-06 | PPR repeat |
| PPR_2 | PF13041 | 217 - 265 | 3.5e-09 | PPR repeat family |
| PPR | PF01535 | 220 - 250 | 5.8e-06 | PPR repeat |
| PPR_2 | PF13041 | 350 - 398 | 1.6e-10 | PPR repeat family |
| PPR | PF01535 | 353 - 382 | 7e-06 | PPR repeat |
| PPR_2 | PF13041 | 458 - 505 | 7.7e-08 | PPR repeat family |
| PPR | PF01535 | 460 - 489 | 6.8e-07 | PPR repeat |
| E_motif | PF20431 | 575 - 637 | 1.8e-22 | E motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1579 |
| AccB1I | GGYRCC | 1 cut(s) | 1579 |
| AccBSI | CCGCTC | 1 cut(s) | 1628 |
| AccI | GTMKAC | 1 cut(s) | 57 |
| AccII | CGCG | 4 cut(s) | 112, 126, 138, 194 |
| AciI | CCGC | 7 cut(s) | 136, 285, 491, 804, 1001, 1628, 1754 |
| AclWI | GGATC | 2 cut(s) | 1380, 1599 |
| AcsI | RAATTY | 6 cut(s) | 522, 1294, 1651, 1783, 1971, 1987 |
| AcuI | CTGAAG | 2 cut(s) | 144, 540 |
| AdeI | CACNNNGTG | 1 cut(s) | 1576 |
| AfaI | GTAC | 7 cut(s) | 100, 593, 717, 1085, 1313, 1581, 2025 |
| AfeI | AGCGCT | 1 cut(s) | 475 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1692 |
| AflIII | ACRYGT | 4 cut(s) | 192, 462, 1601, 1812 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2044 |
| AjnI | CCWGG | 2 cut(s) | 1260, 1935 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1098, 1130 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 193, 225, 1782, 1814 |
| Alw21I | GWGCWC | 2 cut(s) | 359, 1572 |
| Alw26I | GTCTC | 3 cut(s) | 970, 1063, 1384 |
| AlwI | GGATC | 2 cut(s) | 1380, 1599 |
| Aor51HI | AGCGCT | 1 cut(s) | 475 |
| AoxI | GGCC | 3 cut(s) | 924, 1110, 1151 |
| ApeKI | GCWGC | 3 cut(s) | 1210, 1709, 1888 |
| ApoI | RAATTY | 6 cut(s) | 522, 1294, 1651, 1783, 1971, 1987 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 35, 67 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 260 |
| Asp718I | GGTACC | 1 cut(s) | 1579 |
| AspLEI | GCGC | 2 cut(s) | 112, 476 |
| AspS9I | GGNCC | 4 cut(s) | 698, 1111, 1152, 1790 |
| AsuC2I | CCSGG | 1 cut(s) | 1893 |
| AsuHPI | GGTGA | 5 cut(s) | 53, 57, 1280, 1951, 2048 |
| AsuII | TTCGAA | 1 cut(s) | 2088 |
| AvaII | GGWCC | 2 cut(s) | 698, 1790 |
| BanI | GGYRCC | 1 cut(s) | 1579 |
| BanII | GRGCYC | 1 cut(s) | 348 |
| Bbv12I | GWGCWC | 2 cut(s) | 359, 1572 |
| BbvI | GCAGC | 3 cut(s) | 1222, 1696, 1900 |
| BccI | CCATC | 6 cut(s) | 364, 730, 935, 1036, 1331, 1827 |
| BceAI | ACGGC | 2 cut(s) | 698, 1670 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 311, 345, 1614, 1648 |
| BciT130I | CCWGG | 2 cut(s) | 1262, 1937 |
| BcnI | CCSGG | 1 cut(s) | 1893 |
| BcoDI | GTCTC | 3 cut(s) | 970, 1063, 1384 |
| BfmI | CTRYAG | 1 cut(s) | 1208 |
| BfoI | RGCGCY | 1 cut(s) | 477 |
| BisI | GCNGC | 4 cut(s) | 1002, 1211, 1710, 1889 |
| BlpI | GCTNAGC | 1 cut(s) | 1821 |
| BlsI | GCNGC | 4 cut(s) | 1003, 1212, 1711, 1890 |
| Bme1390I | CCNGG | 3 cut(s) | 1262, 1893, 1937 |
| Bme18I | GGWCC | 2 cut(s) | 698, 1790 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2044 |
| BmgT120I | GGNCC | 4 cut(s) | 698, 1111, 1152, 1790 |
| BmiI | GGNNCC | 2 cut(s) | 345, 1581 |
| BmrFI | CCNGG | 3 cut(s) | 1262, 1893, 1937 |
| BmrI | ACTGGG | 1 cut(s) | 145 |
| BmsI | GCATC | 6 cut(s) | 106, 211, 285, 327, 1672, 2020 |
| BmuI | ACTGGG | 1 cut(s) | 145 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1821 |
| Bpu14I | TTCGAA | 1 cut(s) | 2088 |
| BpuMI | CCSGG | 1 cut(s) | 1893 |
| BsaAI | YACGTR | 1 cut(s) | 227 |
| BsaBI | GATNNNNATC | 1 cut(s) | 950 |
| BsaI | GGTCTC | 1 cut(s) | 970 |
| BsaJI | CCNNGG | 3 cut(s) | 978, 1114, 1778 |
| BsaWI | WCCGGW | 1 cut(s) | 754 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1110, 1140, 1748, 1778, 1822, 1852 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1692 |
| Bse1I | ACTGG | 3 cut(s) | 151, 352, 774 |
| Bse3DI | GCAATG | 1 cut(s) | 534 |
| Bse8I | GATNNNNATC | 1 cut(s) | 950 |
| BseBI | CCWGG | 2 cut(s) | 1262, 1937 |
| BseDI | CCNNGG | 3 cut(s) | 978, 1114, 1778 |
| BseGI | GGATG | 3 cut(s) | 171, 738, 951 |
| BseJI | GATNNNNATC | 1 cut(s) | 950 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1692 |
| BseMI | GCAATG | 1 cut(s) | 534 |
| BseMII | CTCAG | 3 cut(s) | 240, 981, 1812 |
| BseNI | ACTGG | 3 cut(s) | 151, 352, 774 |
| BseRI | GAGGAG | 2 cut(s) | 52, 1118 |
| BseXI | GCAGC | 3 cut(s) | 1222, 1696, 1900 |
| BsgI | GTGCAG | 2 cut(s) | 561, 603 |
| Bsh1236I | CGCG | 4 cut(s) | 112, 126, 138, 194 |
| Bsh1285I | CGRYCG | 1 cut(s) | 335 |
| BshFI | GGCC | 3 cut(s) | 926, 1112, 1153 |
| BshNI | GGYRCC | 1 cut(s) | 1579 |
| BsiEI | CGRYCG | 1 cut(s) | 335 |
| BsiHKAI | GWGCWC | 2 cut(s) | 359, 1572 |
| BsiSI | CCGG | 3 cut(s) | 341, 755, 1892 |
| BslFI | GGGAC | 2 cut(s) | 1416, 1438 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1692 |
| BsmAI | GTCTC | 3 cut(s) | 970, 1063, 1384 |
| BsmFI | GGGAC | 2 cut(s) | 1416, 1438 |
| BsmI | GAATGC | 3 cut(s) | 93, 1072, 1393 |
| BsnI | GGCC | 3 cut(s) | 926, 1112, 1153 |
| Bso31I | GGTCTC | 1 cut(s) | 970 |
| Bsp119I | TTCGAA | 1 cut(s) | 2088 |
| Bsp1286I | GDGCHC | 3 cut(s) | 348, 359, 1572 |
| Bsp1407I | TGTACA | 2 cut(s) | 1311, 2023 |
| Bsp143I | GATC | 4 cut(s) | 1204, 1372, 1591, 1612 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1821 |
| Bsp19I | CCATGG | 1 cut(s) | 978 |
| BspACI | CCGC | 7 cut(s) | 136, 285, 491, 804, 1001, 1628, 1754 |
| BspANI | GGCC | 3 cut(s) | 926, 1112, 1153 |
| BspCNI | CTCAG | 3 cut(s) | 241, 980, 1813 |
| BspFNI | CGCG | 4 cut(s) | 112, 126, 138, 194 |
| BspLI | GGNNCC | 2 cut(s) | 345, 1581 |
| BspMAI | CTGCAG | 1 cut(s) | 1212 |
| BspPI | GGATC | 2 cut(s) | 1380, 1599 |
| BspQI | GCTCTTC | 3 cut(s) | 1266, 1560, 2049 |
| BspT104I | TTCGAA | 1 cut(s) | 2088 |
| BspT107I | GGYRCC | 1 cut(s) | 1579 |
| BspTNI | GGTCTC | 1 cut(s) | 970 |
| BsrBI | CCGCTC | 1 cut(s) | 1628 |
| BsrDI | GCAATG | 1 cut(s) | 534 |
| BsrGI | TGTACA | 2 cut(s) | 1311, 2023 |
| BsrI | ACTGG | 3 cut(s) | 151, 352, 774 |
| BssECI | CCNNGG | 3 cut(s) | 978, 1114, 1778 |
| BssMI | GATC | 4 cut(s) | 1204, 1372, 1591, 1612 |
| BssT1I | CCWWGG | 2 cut(s) | 978, 1114 |
| Bst2UI | CCWGG | 2 cut(s) | 1262, 1937 |
| Bst4CI | ACNGT | 1 cut(s) | 671 |
| Bst6I | CTCTTC | 5 cut(s) | 559, 1101, 1266, 1560, 2049 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1076 |
| BstAUI | TGTACA | 2 cut(s) | 1311, 2023 |
| BstBAI | YACGTR | 1 cut(s) | 227 |
| BstBI | TTCGAA | 1 cut(s) | 2088 |
| BstDEI | CTNAG | 5 cut(s) | 249, 479, 967, 1647, 1821 |
| BstDSI | CCRYGG | 1 cut(s) | 978 |
| BstEII | GGTNACC | 1 cut(s) | 41 |
| BstF5I | GGATG | 3 cut(s) | 171, 738, 951 |
| BstFNI | CGCG | 4 cut(s) | 112, 126, 138, 194 |
| BstH2I | RGCGCY | 1 cut(s) | 477 |
| BstHHI | GCGC | 2 cut(s) | 112, 476 |
| BstKTI | GATC | 4 cut(s) | 1207, 1375, 1594, 1615 |
| BstMAI | GTCTC | 3 cut(s) | 970, 1063, 1384 |
| BstMBI | GATC | 4 cut(s) | 1204, 1372, 1591, 1612 |
| BstMCI | CGRYCG | 1 cut(s) | 335 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 116, 482, 710, 1001, 1076, 1219, 1867 |
| BstNI | CCWGG | 2 cut(s) | 1262, 1937 |
| BstNSI | RCATGY | 5 cut(s) | 433, 833, 1409, 1605, 1816 |
| BstPI | GGTNACC | 1 cut(s) | 41 |
| BstSCI | CCNGG | 3 cut(s) | 1260, 1891, 1935 |
| BstSFI | CTRYAG | 1 cut(s) | 1208 |
| BstUI | CGCG | 4 cut(s) | 112, 126, 138, 194 |
| BstV1I | GCAGC | 3 cut(s) | 1222, 1696, 1900 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 527 |
| BsuRI | GGCC | 3 cut(s) | 926, 1112, 1153 |
| BtgI | CCRYGG | 1 cut(s) | 978 |
| BtsCI | GGATG | 3 cut(s) | 171, 738, 951 |
| BtsI | GCAGTG | 1 cut(s) | 813 |
| BtsIMutI | CAGTG | 2 cut(s) | 359, 813 |
| CfoI | GCGC | 2 cut(s) | 112, 476 |
| Cfr13I | GGNCC | 4 cut(s) | 698, 1111, 1152, 1790 |
| CseI | GACGC | 3 cut(s) | 115, 127, 200 |
| Csp6I | GTAC | 7 cut(s) | 99, 592, 716, 1084, 1312, 1580, 2024 |
| CviQI | GTAC | 7 cut(s) | 99, 592, 716, 1084, 1312, 1580, 2024 |
| DdeI | CTNAG | 5 cut(s) | 249, 479, 967, 1647, 1821 |
| DpnI | GATC | 4 cut(s) | 1206, 1374, 1593, 1614 |
| DpnII | GATC | 4 cut(s) | 1204, 1372, 1591, 1612 |
| DraIII | CACNNNGTG | 1 cut(s) | 1576 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2044 |
| Eam1104I | CTCTTC | 5 cut(s) | 559, 1101, 1266, 1560, 2049 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2044 |
| EarI | CTCTTC | 5 cut(s) | 559, 1101, 1266, 1560, 2049 |
| EciI | GGCGGA | 1 cut(s) | 1769 |
| Eco130I | CCWWGG | 2 cut(s) | 978, 1114 |
| Eco24I | GRGCYC | 1 cut(s) | 348 |
| Eco31I | GGTCTC | 1 cut(s) | 970 |
| Eco47I | GGWCC | 2 cut(s) | 698, 1790 |
| Eco47III | AGCGCT | 1 cut(s) | 475 |
| Eco57I | CTGAAG | 2 cut(s) | 144, 540 |
| Eco91I | GGTNACC | 1 cut(s) | 41 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1111 |
| EcoO65I | GGTNACC | 1 cut(s) | 41 |
| EcoRI | GAATTC | 1 cut(s) | 1783 |
| EcoRII | CCWGG | 2 cut(s) | 1260, 1935 |
| EcoT14I | CCWWGG | 2 cut(s) | 978, 1114 |
| EcoT22I | ATGCAT | 2 cut(s) | 435, 886 |
| EcoT38I | GRGCYC | 1 cut(s) | 348 |
| ErhI | CCWWGG | 2 cut(s) | 978, 1114 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1098, 1130 |
| FaqI | GGGAC | 2 cut(s) | 1416, 1438 |
| FauI | CCCGC | 4 cut(s) | 143, 484, 811, 1621 |
| FblI | GTMKAC | 1 cut(s) | 57 |
| Fnu4HI | GCNGC | 4 cut(s) | 1002, 1211, 1710, 1889 |
| FokI | GGATG | 3 cut(s) | 158, 745, 958 |
| FriOI | GRGCYC | 1 cut(s) | 348 |
| Fsp4HI | GCNGC | 4 cut(s) | 1002, 1211, 1710, 1889 |
| GlaI | GCGC | 2 cut(s) | 111, 475 |
| GluI | GCNGC | 4 cut(s) | 1002, 1211, 1710, 1889 |
| HaeII | RGCGCY | 1 cut(s) | 477 |
| HaeIII | GGCC | 3 cut(s) | 926, 1112, 1153 |
| HapII | CCGG | 3 cut(s) | 341, 755, 1892 |
| HgaI | GACGC | 3 cut(s) | 115, 127, 200 |
| HhaI | GCGC | 2 cut(s) | 112, 476 |
| Hin6I | GCGC | 2 cut(s) | 110, 474 |
| HinP1I | GCGC | 2 cut(s) | 110, 474 |
| HincII | GTYRAC | 3 cut(s) | 58, 427, 765 |
| HindII | GTYRAC | 3 cut(s) | 58, 427, 765 |
| HindIII | AAGCTT | 2 cut(s) | 77, 408 |
| HinfI | GANTC | 6 cut(s) | 59, 86, 1119, 1142, 2045, 2066 |
| HpaI | GTTAAC | 1 cut(s) | 427 |
| HpaII | CCGG | 3 cut(s) | 341, 755, 1892 |
| HphI | GGTGA | 5 cut(s) | 53, 57, 1280, 1951, 2048 |
| Hpy166II | GTNNAC | 6 cut(s) | 58, 130, 427, 765, 1032, 1086 |
| Hpy188I | TCNGA | 6 cut(s) | 163, 453, 559, 956, 970, 2104 |
| Hpy188III | TCNNGA | 5 cut(s) | 73, 175, 1132, 1436, 1788 |
| Hpy8I | GTNNAC | 6 cut(s) | 58, 130, 427, 765, 1032, 1086 |
| Hpy99I | CGWCG | 3 cut(s) | 59, 126, 194 |
| HpyAV | CCTTC | 5 cut(s) | 79, 809, 924, 1529, 1582 |
| HpyCH4III | ACNGT | 1 cut(s) | 671 |
| HpyCH4IV | ACGT | 2 cut(s) | 226, 464 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 116, 482, 710, 1001, 1076, 1219, 1867 |
| HpyF3I | CTNAG | 5 cut(s) | 249, 479, 967, 1647, 1821 |
| HpySE526I | ACGT | 2 cut(s) | 226, 464 |
| HspAI | GCGC | 2 cut(s) | 110, 474 |
| KpnI | GGTACC | 1 cut(s) | 1583 |
| KspAI | GTTAAC | 1 cut(s) | 427 |
| Kzo9I | GATC | 4 cut(s) | 1204, 1372, 1591, 1612 |
| LguI | GCTCTTC | 3 cut(s) | 1266, 1560, 2049 |
| LmnI | GCTCC | 2 cut(s) | 343, 1468 |
| Lsp1109I | GCAGC | 3 cut(s) | 1222, 1696, 1900 |
| LweI | GCATC | 6 cut(s) | 106, 211, 285, 327, 1672, 2020 |
| MaeII | ACGT | 2 cut(s) | 226, 464 |
| MaeIII | GTNAC | 5 cut(s) | 41, 548, 1483, 1727, 2036 |
| MalI | GATC | 4 cut(s) | 1206, 1374, 1593, 1614 |
| MbiI | CCGCTC | 1 cut(s) | 1628 |
| MboI | GATC | 4 cut(s) | 1204, 1372, 1591, 1612 |
| MhlI | GDGCHC | 3 cut(s) | 348, 359, 1572 |
| MluCI | AATT | 8 cut(s) | 33, 522, 1294, 1302, 1651, 1783, 1971, 1987 |
| MluI | ACGCGT | 1 cut(s) | 192 |
| MlyI | GAGTC | 5 cut(s) | 53, 80, 1113, 1151, 2054 |
| MmeI | TCCRAC | 4 cut(s) | 248, 1270, 1344, 1883 |
| Mph1103I | ATGCAT | 2 cut(s) | 435, 886 |
| MroXI | GAANNNNTTC | 1 cut(s) | 260 |
| MseI | TTAA | 4 cut(s) | 426, 497, 1655, 1734 |
| MslI | CAYNNNNRTG | 4 cut(s) | 644, 1670, 1926, 2019 |
| MspI | CCGG | 3 cut(s) | 341, 755, 1892 |
| MspR9I | CCNGG | 3 cut(s) | 1262, 1893, 1937 |
| Mva1269I | GAATGC | 3 cut(s) | 93, 1072, 1393 |
| MvaI | CCWGG | 2 cut(s) | 1262, 1937 |
| MvnI | CGCG | 4 cut(s) | 112, 126, 138, 194 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 116, 482, 710, 1001, 1076, 1219, 1867 |
| NciI | CCSGG | 1 cut(s) | 1893 |
| NcoI | CCATGG | 1 cut(s) | 978 |
| NdeII | GATC | 4 cut(s) | 1204, 1372, 1591, 1612 |
| NlaIV | GGNNCC | 2 cut(s) | 345, 1581 |
| NmuCI | GTSAC | 2 cut(s) | 41, 2036 |
| NsiI | ATGCAT | 2 cut(s) | 435, 886 |
| NspI | RCATGY | 5 cut(s) | 433, 833, 1409, 1605, 1816 |
| NspV | TTCGAA | 1 cut(s) | 2088 |
| PciI | ACATGT | 2 cut(s) | 1601, 1812 |
| PciSI | GCTCTTC | 3 cut(s) | 1266, 1560, 2049 |
| PctI | GAATGC | 3 cut(s) | 93, 1072, 1393 |
| PdmI | GAANNNNTTC | 1 cut(s) | 260 |
| PfeI | GAWTC | 1 cut(s) | 2066 |
| PkrI | GCNGC | 4 cut(s) | 1003, 1212, 1711, 1890 |
| PleI | GAGTC | 5 cut(s) | 53, 80, 1113, 1150, 2053 |
| PpsI | GAGTC | 5 cut(s) | 53, 80, 1113, 1150, 2053 |
| Ppu21I | YACGTR | 1 cut(s) | 227 |
| PscI | ACATGT | 2 cut(s) | 1601, 1812 |
| Psp6I | CCWGG | 2 cut(s) | 1260, 1935 |
| PspEI | GGTNACC | 1 cut(s) | 41 |
| PspGI | CCWGG | 2 cut(s) | 1260, 1935 |
| PspN4I | GGNNCC | 2 cut(s) | 345, 1581 |
| PspPI | GGNCC | 4 cut(s) | 698, 1111, 1152, 1790 |
| PstI | CTGCAG | 1 cut(s) | 1212 |
| RsaI | GTAC | 7 cut(s) | 100, 593, 717, 1085, 1313, 1581, 2025 |
| RsaNI | GTAC | 7 cut(s) | 99, 592, 716, 1084, 1312, 1580, 2024 |
| RseI | CAYNNNNRTG | 4 cut(s) | 644, 1670, 1926, 2019 |
| SalI | GTCGAC | 1 cut(s) | 56 |
| SapI | GCTCTTC | 3 cut(s) | 1266, 1560, 2049 |
| SaqAI | TTAA | 4 cut(s) | 426, 497, 1655, 1734 |
| SatI | GCNGC | 4 cut(s) | 1002, 1211, 1710, 1889 |
| Sau3AI | GATC | 4 cut(s) | 1204, 1372, 1591, 1612 |
| Sau96I | GGNCC | 4 cut(s) | 698, 1111, 1152, 1790 |
| SchI | GAGTC | 5 cut(s) | 53, 80, 1113, 1151, 2054 |
| ScrFI | CCNGG | 3 cut(s) | 1262, 1893, 1937 |
| SduI | GDGCHC | 3 cut(s) | 348, 359, 1572 |
| SfaNI | GCATC | 6 cut(s) | 106, 211, 285, 327, 1672, 2020 |
| SfcI | CTRYAG | 1 cut(s) | 1208 |
| SfuI | TTCGAA | 1 cut(s) | 2088 |
| SinI | GGWCC | 2 cut(s) | 698, 1790 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 644, 1670, 1926, 2019 |
| Sse9I | AATT | 8 cut(s) | 33, 522, 1294, 1302, 1651, 1783, 1971, 1987 |
| SsiI | CCGC | 7 cut(s) | 136, 285, 491, 804, 1001, 1628, 1754 |
| SspI | AATATT | 3 cut(s) | 419, 1443, 1546 |
| StyD4I | CCNGG | 3 cut(s) | 1260, 1891, 1935 |
| StyI | CCWWGG | 2 cut(s) | 978, 1114 |
| TaaI | ACNGT | 1 cut(s) | 671 |
| TaiI | ACGT | 2 cut(s) | 229, 467 |
| TaqI | TCGA | 8 cut(s) | 57, 189, 216, 335, 368, 939, 1624, 2088 |
| TaqII | GACCGA | 1 cut(s) | 321 |
| TasI | AATT | 8 cut(s) | 33, 522, 1294, 1302, 1651, 1783, 1971, 1987 |
| TatI | WGTACW | 3 cut(s) | 591, 1311, 2023 |
| TauI | GCSGC | 1 cut(s) | 1004 |
| TfiI | GAWTC | 1 cut(s) | 2066 |
| Tru1I | TTAA | 4 cut(s) | 426, 497, 1655, 1734 |
| Tru9I | TTAA | 4 cut(s) | 426, 497, 1655, 1734 |
| TscAI | CASTG | 2 cut(s) | 359, 813 |
| TseFI | GTSAC | 2 cut(s) | 41, 2036 |
| TseI | GCWGC | 3 cut(s) | 1210, 1709, 1888 |
| Tsp45I | GTSAC | 2 cut(s) | 41, 2036 |
| TspRI | CASTG | 2 cut(s) | 359, 813 |
| VpaK11BI | GGWCC | 2 cut(s) | 698, 1790 |
| XapI | RAATTY | 6 cut(s) | 522, 1294, 1651, 1783, 1971, 1987 |
| XceI | RCATGY | 5 cut(s) | 433, 833, 1409, 1605, 1816 |
| XmiI | GTMKAC | 1 cut(s) | 57 |
| XmnI | GAANNNNTTC | 1 cut(s) | 260 |
| Zsp2I | ATGCAT | 2 cut(s) | 435, 886 |