Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 82 - 203 | 5.7e-21 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 545 |
| AccB1I | GGYRCC | 1 cut(s) | 545 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 322 |
| AccI | GTMKAC | 1 cut(s) | 444 |
| AciI | CCGC | 2 cut(s) | 392, 543 |
| AcoI | YGGCCR | 1 cut(s) | 313 |
| AcsI | RAATTY | 2 cut(s) | 193, 472 |
| AfaI | GTAC | 3 cut(s) | 236, 505, 547 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 227, 322, 346, 347, 575 |
| AgsI | TTSAA | 6 cut(s) | 143, 152, 198, 413, 482, 566 |
| AluBI | AGCT | 5 cut(s) | 61, 178, 257, 461, 590 |
| AluI | AGCT | 5 cut(s) | 61, 178, 257, 461, 590 |
| Alw26I | GTCTC | 1 cut(s) | 635 |
| AoxI | GGCC | 1 cut(s) | 313 |
| ApeKI | GCWGC | 1 cut(s) | 175 |
| ApoI | RAATTY | 2 cut(s) | 193, 472 |
| AseI | ATTAAT | 1 cut(s) | 320 |
| AsiSI | GCGATCGC | 1 cut(s) | 333 |
| Asp718I | GGTACC | 1 cut(s) | 545 |
| AsuHPI | GGTGA | 1 cut(s) | 329 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 495, 528 |
| BalI | TGGCCA | 1 cut(s) | 315 |
| BanI | GGYRCC | 1 cut(s) | 545 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 688 |
| BbvI | GCAGC | 1 cut(s) | 187 |
| BccI | CCATC | 1 cut(s) | 245 |
| BcoDI | GTCTC | 1 cut(s) | 635 |
| BfaI | CTAG | 3 cut(s) | 467, 570, 627 |
| BfmI | CTRYAG | 1 cut(s) | 222 |
| BisI | GCNGC | 1 cut(s) | 176 |
| BlsI | GCNGC | 1 cut(s) | 177 |
| BmiI | GGNNCC | 1 cut(s) | 547 |
| BmsI | GCATC | 1 cut(s) | 97 |
| BsaJI | CCNNGG | 1 cut(s) | 205 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 227, 322, 346, 347, 575 |
| BseDI | CCNNGG | 1 cut(s) | 205 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 227, 322, 346, 347, 575 |
| BseMII | CTCAG | 1 cut(s) | 486 |
| BseRI | GAGGAG | 1 cut(s) | 512 |
| BseXI | GCAGC | 1 cut(s) | 187 |
| BsgI | GTGCAG | 1 cut(s) | 312 |
| Bsh1285I | CGRYCG | 1 cut(s) | 333 |
| BshFI | GGCC | 1 cut(s) | 315 |
| BshNI | GGYRCC | 1 cut(s) | 545 |
| BsiEI | CGRYCG | 1 cut(s) | 333 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 227, 322, 346, 347, 575 |
| BsmAI | GTCTC | 1 cut(s) | 635 |
| BsnI | GGCC | 1 cut(s) | 315 |
| Bsp143I | GATC | 1 cut(s) | 330 |
| Bsp19I | CCATGG | 1 cut(s) | 205 |
| BspACI | CCGC | 2 cut(s) | 392, 543 |
| BspANI | GGCC | 1 cut(s) | 315 |
| BspCNI | CTCAG | 1 cut(s) | 487 |
| BspLI | GGNNCC | 1 cut(s) | 547 |
| BspMAI | CTGCAG | 1 cut(s) | 226 |
| BspT107I | GGYRCC | 1 cut(s) | 545 |
| BssECI | CCNNGG | 1 cut(s) | 205 |
| BssMI | GATC | 1 cut(s) | 330 |
| BssT1I | CCWWGG | 1 cut(s) | 205 |
| Bst4CI | ACNGT | 2 cut(s) | 272, 449 |
| Bst6I | CTCTTC | 1 cut(s) | 274 |
| BstC8I | GCNNGC | 5 cut(s) | 173, 394, 463, 537, 541 |
| BstDEI | CTNAG | 1 cut(s) | 495 |
| BstDSI | CCRYGG | 1 cut(s) | 205 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 573 |
| BstKTI | GATC | 1 cut(s) | 333 |
| BstMAI | GTCTC | 1 cut(s) | 635 |
| BstMBI | GATC | 1 cut(s) | 330 |
| BstMCI | CGRYCG | 1 cut(s) | 333 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 20, 389 |
| BstSFI | CTRYAG | 1 cut(s) | 222 |
| BstV1I | GCAGC | 1 cut(s) | 187 |
| BsuRI | GGCC | 1 cut(s) | 315 |
| BtgI | CCRYGG | 1 cut(s) | 205 |
| BtsIMutI | CAGTG | 1 cut(s) | 383 |
| Cac8I | GCNNGC | 5 cut(s) | 173, 394, 463, 537, 541 |
| Csp6I | GTAC | 3 cut(s) | 235, 504, 546 |
| CviAII | CATG | 5 cut(s) | 20, 206, 532, 583, 593 |
| CviJI | RGCY | 7 cut(s) | 61, 178, 257, 315, 461, 590, 661 |
| CviKI_1 | RGCY | 7 cut(s) | 61, 178, 257, 315, 461, 590, 661 |
| CviQI | GTAC | 3 cut(s) | 235, 504, 546 |
| DdeI | CTNAG | 1 cut(s) | 495 |
| DpnI | GATC | 1 cut(s) | 332 |
| DpnII | GATC | 1 cut(s) | 330 |
| EaeI | YGGCCR | 1 cut(s) | 313 |
| Eam1104I | CTCTTC | 1 cut(s) | 274 |
| EarI | CTCTTC | 1 cut(s) | 274 |
| Eco130I | CCWWGG | 1 cut(s) | 205 |
| Eco32I | GATATC | 1 cut(s) | 436 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 573 |
| EcoRI | GAATTC | 1 cut(s) | 472 |
| EcoRV | GATATC | 1 cut(s) | 436 |
| EcoT14I | CCWWGG | 1 cut(s) | 205 |
| ErhI | CCWWGG | 1 cut(s) | 205 |
| FaeI | CATG | 5 cut(s) | 23, 209, 535, 586, 596 |
| FatI | CATG | 5 cut(s) | 19, 205, 531, 582, 592 |
| FauI | CCCGC | 1 cut(s) | 385 |
| FblI | GTMKAC | 1 cut(s) | 444 |
| Fnu4HI | GCNGC | 1 cut(s) | 176 |
| Fsp4HI | GCNGC | 1 cut(s) | 176 |
| FspBI | CTAG | 3 cut(s) | 467, 570, 627 |
| GluI | GCNGC | 1 cut(s) | 176 |
| HaeIII | GGCC | 1 cut(s) | 315 |
| Hin1II | CATG | 5 cut(s) | 23, 209, 535, 586, 596 |
| HincII | GTYRAC | 1 cut(s) | 445 |
| HindII | GTYRAC | 1 cut(s) | 445 |
| HindIII | AAGCTT | 1 cut(s) | 59 |
| HinfI | GANTC | 3 cut(s) | 8, 526, 677 |
| HphI | GGTGA | 1 cut(s) | 329 |
| Hpy166II | GTNNAC | 1 cut(s) | 445 |
| Hpy188I | TCNGA | 6 cut(s) | 31, 250, 303, 496, 655, 682 |
| Hpy188III | TCNNGA | 4 cut(s) | 181, 410, 431, 523 |
| Hpy8I | GTNNAC | 1 cut(s) | 445 |
| HpyAV | CCTTC | 3 cut(s) | 26, 225, 569 |
| HpyCH4III | ACNGT | 2 cut(s) | 272, 449 |
| HpyCH4V | TGCA | 3 cut(s) | 224, 293, 535 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 20, 389 |
| HpyF3I | CTNAG | 1 cut(s) | 495 |
| Hsp92II | CATG | 5 cut(s) | 23, 209, 535, 586, 596 |
| KpnI | GGTACC | 1 cut(s) | 549 |
| Kzo9I | GATC | 1 cut(s) | 330 |
| LmnI | GCTCC | 2 cut(s) | 254, 326 |
| LpnPI | CCDG | 5 cut(s) | 66, 157, 166, 234, 553 |
| Lsp1109I | GCAGC | 1 cut(s) | 187 |
| LweI | GCATC | 1 cut(s) | 97 |
| MaeI | CTAG | 3 cut(s) | 467, 570, 627 |
| MaeIII | GTNAC | 3 cut(s) | 350, 578, 695 |
| MalI | GATC | 1 cut(s) | 332 |
| MboI | GATC | 1 cut(s) | 330 |
| MboII | GAAGA | 3 cut(s) | 85, 291, 696 |
| MlsI | TGGCCA | 1 cut(s) | 315 |
| MluCI | AATT | 8 cut(s) | 165, 193, 239, 317, 342, 472, 609, 691 |
| MluNI | TGGCCA | 1 cut(s) | 315 |
| MlyI | GAGTC | 1 cut(s) | 520 |
| MmeI | TCCRAC | 3 cut(s) | 208, 633, 705 |
| MnlI | CCTC | 5 cut(s) | 275, 438, 490, 493, 637 |
| Mox20I | TGGCCA | 1 cut(s) | 315 |
| MscI | TGGCCA | 1 cut(s) | 315 |
| MseI | TTAA | 3 cut(s) | 242, 320, 686 |
| MslI | CAYNNNNRTG | 1 cut(s) | 712 |
| Msp20I | TGGCCA | 1 cut(s) | 315 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 20, 389 |
| NcoI | CCATGG | 1 cut(s) | 205 |
| NdeII | GATC | 1 cut(s) | 330 |
| NlaIII | CATG | 5 cut(s) | 23, 209, 535, 586, 596 |
| NlaIV | GGNNCC | 1 cut(s) | 547 |
| NmuCI | GTSAC | 1 cut(s) | 350 |
| PfeI | GAWTC | 2 cut(s) | 8, 677 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 322 |
| PkrI | GCNGC | 1 cut(s) | 177 |
| Ple19I | CGATCG | 1 cut(s) | 333 |
| PleI | GAGTC | 1 cut(s) | 520 |
| PpsI | GAGTC | 1 cut(s) | 520 |
| PshBI | ATTAAT | 1 cut(s) | 320 |
| PspN4I | GGNNCC | 1 cut(s) | 547 |
| PstI | CTGCAG | 1 cut(s) | 226 |
| PvuI | CGATCG | 1 cut(s) | 333 |
| RgaI | GCGATCGC | 1 cut(s) | 333 |
| RsaI | GTAC | 3 cut(s) | 236, 505, 547 |
| RsaNI | GTAC | 3 cut(s) | 235, 504, 546 |
| RseI | CAYNNNNRTG | 1 cut(s) | 712 |
| SalI | GTCGAC | 1 cut(s) | 443 |
| SaqAI | TTAA | 3 cut(s) | 242, 320, 686 |
| SatI | GCNGC | 1 cut(s) | 176 |
| Sau3AI | GATC | 1 cut(s) | 330 |
| SchI | GAGTC | 1 cut(s) | 520 |
| SfaAI | GCGATCGC | 1 cut(s) | 333 |
| SfaNI | GCATC | 1 cut(s) | 97 |
| SfcI | CTRYAG | 1 cut(s) | 222 |
| SgfI | GCGATCGC | 1 cut(s) | 333 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 712 |
| Sse9I | AATT | 8 cut(s) | 165, 193, 239, 317, 342, 472, 609, 691 |
| SsiI | CCGC | 2 cut(s) | 392, 543 |
| SspMI | CTAG | 3 cut(s) | 467, 570, 627 |
| StyI | CCWWGG | 1 cut(s) | 205 |
| TaaI | ACNGT | 2 cut(s) | 272, 449 |
| TaqI | TCGA | 3 cut(s) | 438, 444, 671 |
| TasI | AATT | 8 cut(s) | 165, 193, 239, 317, 342, 472, 609, 691 |
| TfiI | GAWTC | 2 cut(s) | 8, 677 |
| Tru1I | TTAA | 3 cut(s) | 242, 320, 686 |
| Tru9I | TTAA | 3 cut(s) | 242, 320, 686 |
| TscAI | CASTG | 1 cut(s) | 390 |
| TseFI | GTSAC | 1 cut(s) | 350 |
| TseI | GCWGC | 1 cut(s) | 175 |
| Tsp45I | GTSAC | 1 cut(s) | 350 |
| TspDTI | ATGAA | 5 cut(s) | 8, 116, 201, 633, 704 |
| TspRI | CASTG | 1 cut(s) | 390 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 322 |
| VspI | ATTAAT | 1 cut(s) | 320 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 573 |
| XapI | RAATTY | 2 cut(s) | 193, 472 |
| XmiI | GTMKAC | 1 cut(s) | 444 |
| XspI | CTAG | 3 cut(s) | 467, 570, 627 |