ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 100 | 3.2e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 111 |
| AcsI | RAATTY | 1 cut(s) | 227 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 103 |
| AgsI | TTSAA | 2 cut(s) | 122, 220 |
| AluBI | AGCT | 4 cut(s) | 155, 214, 266, 275 |
| AluI | AGCT | 4 cut(s) | 155, 214, 266, 275 |
| Alw26I | GTCTC | 2 cut(s) | 73, 159 |
| ApeKI | GCWGC | 1 cut(s) | 275 |
| ApoI | RAATTY | 1 cut(s) | 227 |
| BbvI | GCAGC | 1 cut(s) | 262 |
| BcoDI | GTCTC | 2 cut(s) | 73, 159 |
| BfaI | CTAG | 1 cut(s) | 59 |
| BisI | GCNGC | 1 cut(s) | 276 |
| BlsI | GCNGC | 1 cut(s) | 277 |
| Bpu10I | CCTNAGC | 1 cut(s) | 286 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 103 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 103 |
| BseXI | GCAGC | 1 cut(s) | 262 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 103 |
| BsmAI | GTCTC | 2 cut(s) | 73, 159 |
| Bsp143I | GATC | 1 cut(s) | 175 |
| BssMI | GATC | 1 cut(s) | 175 |
| Bst4CI | ACNGT | 1 cut(s) | 84 |
| BstDEI | CTNAG | 2 cut(s) | 179, 286 |
| BstKTI | GATC | 1 cut(s) | 178 |
| BstMAI | GTCTC | 2 cut(s) | 73, 159 |
| BstMBI | GATC | 1 cut(s) | 175 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 53, 93, 272, 296 |
| BstNSI | RCATGY | 1 cut(s) | 47 |
| BstV1I | GCAGC | 1 cut(s) | 262 |
| BtgZI | GCGATG | 2 cut(s) | 23, 147 |
| CviAII | CATG | 3 cut(s) | 44, 101, 185 |
| CviJI | RGCY | 7 cut(s) | 56, 155, 183, 214, 266, 275, 299 |
| CviKI_1 | RGCY | 7 cut(s) | 56, 155, 183, 214, 266, 275, 299 |
| DdeI | CTNAG | 2 cut(s) | 179, 286 |
| DpnI | GATC | 1 cut(s) | 177 |
| DpnII | GATC | 1 cut(s) | 175 |
| FaeI | CATG | 3 cut(s) | 47, 104, 188 |
| FaiI | YATR | 8 cut(s) | 45, 72, 94, 102, 111, 186, 242, 244 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 285, 317 |
| FatI | CATG | 3 cut(s) | 43, 100, 184 |
| Fnu4HI | GCNGC | 1 cut(s) | 276 |
| Fsp4HI | GCNGC | 1 cut(s) | 276 |
| FspBI | CTAG | 1 cut(s) | 59 |
| GluI | GCNGC | 1 cut(s) | 276 |
| Hin1II | CATG | 3 cut(s) | 47, 104, 188 |
| Hpy188I | TCNGA | 2 cut(s) | 226, 307 |
| Hpy188III | TCNNGA | 1 cut(s) | 217 |
| HpyAV | CCTTC | 1 cut(s) | 182 |
| HpyCH4III | ACNGT | 1 cut(s) | 84 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 53, 93, 272, 296 |
| HpyF3I | CTNAG | 2 cut(s) | 179, 286 |
| Hsp92II | CATG | 3 cut(s) | 47, 104, 188 |
| Kzo9I | GATC | 1 cut(s) | 175 |
| Lsp1109I | GCAGC | 1 cut(s) | 262 |
| MaeI | CTAG | 1 cut(s) | 59 |
| MaeIII | GTNAC | 1 cut(s) | 12 |
| MalI | GATC | 1 cut(s) | 177 |
| MboI | GATC | 1 cut(s) | 175 |
| MluCI | AATT | 4 cut(s) | 171, 207, 227, 309 |
| MnlI | CCTC | 5 cut(s) | 46, 97, 196, 240, 289 |
| MseI | TTAA | 3 cut(s) | 35, 141, 210 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 53, 93, 272, 296 |
| NdeII | GATC | 1 cut(s) | 175 |
| NlaIII | CATG | 3 cut(s) | 47, 104, 188 |
| NmuCI | GTSAC | 1 cut(s) | 12 |
| NspI | RCATGY | 1 cut(s) | 47 |
| PkrI | GCNGC | 1 cut(s) | 277 |
| PsiI | TTATAA | 1 cut(s) | 111 |
| SaqAI | TTAA | 3 cut(s) | 35, 141, 210 |
| SatI | GCNGC | 1 cut(s) | 276 |
| Sau3AI | GATC | 1 cut(s) | 175 |
| SetI | ASST | 5 cut(s) | 157, 193, 216, 268, 277 |
| SgeI | CNNG | 8 cut(s) | 56, 71, 113, 128, 197, 229, 275, 291 |
| Sse9I | AATT | 4 cut(s) | 171, 207, 227, 309 |
| SspMI | CTAG | 1 cut(s) | 59 |
| TaaI | ACNGT | 1 cut(s) | 84 |
| TasI | AATT | 4 cut(s) | 171, 207, 227, 309 |
| Tru1I | TTAA | 3 cut(s) | 35, 141, 210 |
| Tru9I | TTAA | 3 cut(s) | 35, 141, 210 |
| TseFI | GTSAC | 1 cut(s) | 12 |
| TseI | GCWGC | 1 cut(s) | 275 |
| Tsp45I | GTSAC | 1 cut(s) | 12 |
| TspDTI | ATGAA | 1 cut(s) | 201 |
| TspGWI | ACGGA | 1 cut(s) | 65 |
| XapI | RAATTY | 1 cut(s) | 227 |
| XceI | RCATGY | 1 cut(s) | 47 |
| XspI | CTAG | 1 cut(s) | 59 |