RchiOBHm_Chr3g0468731

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000072
Physical Location & Seq
Reverse (-)
14664321 .. 14665549
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43460

Sequence Viewer

Length: 1104 bp
ATGGCTATGAAAGATGCTAGGGAGAGTTTGAATGGGCAGCAGGTGGTGCCGGTGGTCACTGAGCACTGGCGACATCTTTGGAAACTTCGAGTGCCTCCTAAGATGTCCCATTTTCTGTGGAGGTGTTCGACGGGCTATTTGCCGTGCATGTGGGCTCTTTTTCAACGGTGGATTTCTAATAGTTCAATGTGTCCGAGGTGTCATGTCGCTGAAGAAACCCCTTTGCATGCAACACGTTCGTGCTCTCTTTGTGTTGCGGTGTTAGAGAGGGCGAGTTTTTATTTGAAACTGAACCCGGGTACGTCGAACAATTTTTCTTCATTTATTGAGCACGCCATACAAGTTTTAACTTTGGATGAGATGAAGTTGTTAATTATCATTTTATGGAGCAATTGGAATGAAAGGAATCTAGTTGTGCATGGTGGTCAACCTAGACCTGCTTTAGTCATATTTAATCAATGCTACTCCATTTGGACTAGCTTGATTACGGTGCAAGAAAGGGAGACTTGTGATAGGAGGAATAATGGGGTAATTGCCCCTGACATTGTTCGGTGGACTCCTCCATCTCCACAGGGTCTGAAGCTTAATTGTGGTGAGTCTGTTTCTAACAATGGGTCTCATGTTGGAATTGGGGCATTAATTAGGGGAGGTGATGGGAACTTGGTGCTTGCGGTGGGGGAAAGGTTGATTGGCCGTCTTCAGCCATGTGCAGCTGAGCTGCAGGCACTAATATTGGGACTGGAAGTAATGGTAGAGAATGGTTGGAGGATGGAAAAGGTAGAAACTGATTGCCTGGAGGCTGTCCAATTGGTGAATGGATGTGATGATTGTTTGGCTCCGGAGGGTGTTTTGGTTGACAAGGTCAGGATGCTATTGGCTTCTGTTGGTATTCAAGGAATTTCCCATGTGCCCAGAAGTGTGAATGGTGCTGCTTATGTTATTGCAAAGTCTGTAGCCCGATTAAATGGGCGTTTTAGTTGGTTAGGGGTTGGGCCCCATTGGCTCATGGATGTTGTCGCTGACGACAGACCCGTAACTCATGGTTGTAATAGGGCAGTGGGGGGGAACTCTTTGTCCACCACTGGCTTTTCTCATATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

367

Amino Acids

40.54

Weight (kDa)

7.94

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 20 - 84 4.2e-10 zinc-binding in reverse transcriptase
RVT_3 PF13456 202 - 317 9.2e-16 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 31
Acc36I ACCTGC 2 cut(s) 31, 445
AccB1I GGYRCC 1 cut(s) 46
AccIII TCCGGA 1 cut(s) 838
AciI CCGC 2 cut(s) 257, 671
AcoI YGGCCR 1 cut(s) 691
AcsI RAATTY 1 cut(s) 897
AcuI CTGAAG 3 cut(s) 231, 599, 683
AfaI GTAC 1 cut(s) 301
AflIII ACRYGT 1 cut(s) 233
AgsI TTSAA 5 cut(s) 31, 164, 186, 286, 893
AjnI CCWGG 1 cut(s) 792
AjuI GAANNNNNNNTTGG 2 cut(s) 672, 704
AleI CACNNNNGTG 1 cut(s) 238
AloI GAACNNNNNNTCC 2 cut(s) 1058, 1090
AluBI AGCT 4 cut(s) 480, 583, 713, 718
AluI AGCT 4 cut(s) 480, 583, 713, 718
Alw21I GWGCWC 3 cut(s) 66, 245, 333
Alw26I GTCTC 2 cut(s) 497, 621
AlwNI CAGNNNCTG 1 cut(s) 577
Ama87I CYCGRG 1 cut(s) 295
Aor13HI TCCGGA 1 cut(s) 838
AoxI GGCC 2 cut(s) 691, 992
ApaI GGGCCC 1 cut(s) 996
ApeKI GCWGC 4 cut(s) 37, 710, 718, 929
ApoI RAATTY 1 cut(s) 897
ArsI GACNNNNNNTTYG 2 cut(s) 121, 153
AseI ATTAAT 1 cut(s) 638
AspS9I GGNCC 2 cut(s) 992, 993
AsuC2I CCSGG 2 cut(s) 296, 297
AsuHPI GGTGA 3 cut(s) 605, 662, 823
AvaI CYCGRG 1 cut(s) 295
BaeGI GKGCMC 2 cut(s) 912, 996
BanI GGYRCC 1 cut(s) 46
BanII GRGCYC 2 cut(s) 157, 996
BbsI GAAGAC 1 cut(s) 689
Bbv12I GWGCWC 3 cut(s) 66, 245, 333
BbvI GCAGC 4 cut(s) 49, 705, 722, 916
BccI CCATC 3 cut(s) 571, 647, 763
BceAI ACGGC 2 cut(s) 127, 678
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BciT130I CCWGG 1 cut(s) 794
BcnI CCSGG 2 cut(s) 296, 297
BcoDI GTCTC 2 cut(s) 497, 621
BfaI CTAG 4 cut(s) 18, 410, 432, 477
BfmI CTRYAG 2 cut(s) 719, 951
BfuAI ACCTGC 2 cut(s) 31, 445
BglI GCCNNNNNGGC 1 cut(s) 1000
BisI GCNGC 4 cut(s) 38, 711, 719, 930
BlpI GCTNAGC 1 cut(s) 714
BlsI GCNGC 4 cut(s) 39, 712, 720, 931
Bme1390I CCNGG 3 cut(s) 296, 297, 794
BmeT110I CYCGRG 1 cut(s) 295
BmgT120I GGNCC 2 cut(s) 992, 993
BmiI GGNNCC 4 cut(s) 48, 837, 994, 995
BmrFI CCNGG 3 cut(s) 296, 297, 794
BmsI GCATC 2 cut(s) 4, 858
BpiI GAAGAC 1 cut(s) 689
BpmI CTGGAG 1 cut(s) 815
Bpu1102I GCTNAGC 1 cut(s) 714
BpuMI CCSGG 2 cut(s) 296, 297
BsaI GGTCTC 1 cut(s) 621
BsaJI CCNNGG 2 cut(s) 194, 295
BsaWI WCCGGW 1 cut(s) 838
Bse118I RCCGGY 1 cut(s) 49
Bse1I ACTGG 3 cut(s) 71, 744, 1087
BseAI TCCGGA 1 cut(s) 838
BseBI CCWGG 1 cut(s) 794
BseDI CCNNGG 2 cut(s) 194, 295
BseGI GGATG 5 cut(s) 361, 774, 824, 873, 1015
BseMII CTCAG 2 cut(s) 51, 705
BseNI ACTGG 3 cut(s) 71, 744, 1087
BseRI GAGGAG 1 cut(s) 549
BseSI GKGCMC 2 cut(s) 912, 996
BseXI GCAGC 4 cut(s) 49, 705, 722, 916
BsgI GTGCAG 1 cut(s) 729
BshFI GGCC 2 cut(s) 693, 994
BshNI GGYRCC 1 cut(s) 46
BsiHKAI GWGCWC 3 cut(s) 66, 245, 333
BsiHKCI CYCGRG 1 cut(s) 295
BsiSI CCGG 3 cut(s) 50, 296, 839
BslFI GGGAC 2 cut(s) 91, 750
BsmAI GTCTC 2 cut(s) 497, 621
BsmFI GGGAC 2 cut(s) 91, 750
BsnI GGCC 2 cut(s) 693, 994
Bso31I GGTCTC 1 cut(s) 621
BsoBI CYCGRG 1 cut(s) 295
Bsp120I GGGCCC 1 cut(s) 992
Bsp1286I GDGCHC 6 cut(s) 66, 157, 245, 333, 912, 996
Bsp13I TCCGGA 1 cut(s) 838
Bsp1720I GCTNAGC 1 cut(s) 714
BspACI CCGC 2 cut(s) 257, 671
BspANI GGCC 2 cut(s) 693, 994
BspCNI CTCAG 2 cut(s) 52, 706
BspEI TCCGGA 1 cut(s) 838
BspLI GGNNCC 4 cut(s) 48, 837, 994, 995
BspMAI CTGCAG 1 cut(s) 723
BspMI ACCTGC 2 cut(s) 31, 445
BspT107I GGYRCC 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 621
BsrFI RCCGGY 1 cut(s) 49
BsrI ACTGG 3 cut(s) 71, 744, 1087
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 2 cut(s) 194, 295
Bst2UI CCWGG 1 cut(s) 794
Bst4CI ACNGT 2 cut(s) 168, 490
BstAPI GCANNNNNTGC 1 cut(s) 46
BstC8I GCNNGC 4 cut(s) 228, 333, 669, 723
BstDEI CTNAG 3 cut(s) 60, 99, 714
BstF5I GGATG 5 cut(s) 361, 774, 824, 873, 1015
BstMAI GTCTC 2 cut(s) 497, 621
BstMWI GCNNNNNNNGC 2 cut(s) 46, 1000
BstNI CCWGG 1 cut(s) 794
BstNSI RCATGY 2 cut(s) 151, 230
BstSCI CCNGG 3 cut(s) 294, 295, 792
BstSFI CTRYAG 2 cut(s) 719, 951
BstSLI GKGCMC 2 cut(s) 912, 996
BstV1I GCAGC 4 cut(s) 49, 705, 722, 916
BstV2I GAAGAC 1 cut(s) 689
BsuRI GGCC 2 cut(s) 693, 994
BtsCI GGATG 5 cut(s) 361, 774, 824, 873, 1015
BtsI GCAGTG 1 cut(s) 1062
BtsIMutI CAGTG 4 cut(s) 57, 64, 1062, 1080
BveI ACCTGC 2 cut(s) 31, 445
Cac8I GCNNGC 4 cut(s) 228, 333, 669, 723
CaiI CAGNNNCTG 1 cut(s) 577
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 2 cut(s) 992, 993
Cfr9I CCCGGG 1 cut(s) 295
Csp6I GTAC 1 cut(s) 300
CviAII CATG 9 cut(s) 148, 203, 227, 419, 620, 705, 905, 1006, 1040
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 3 cut(s) 60, 99, 714
EaeI YGGCCR 1 cut(s) 691
Eco24I GRGCYC 2 cut(s) 157, 996
Eco31I GGTCTC 1 cut(s) 621
Eco57I CTGAAG 3 cut(s) 231, 599, 683
Eco88I CYCGRG 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 993
EcoRII CCWGG 1 cut(s) 792
EcoT38I GRGCYC 2 cut(s) 157, 996
FaeI CATG 9 cut(s) 151, 206, 230, 422, 623, 708, 908, 1009, 1043
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FaqI GGGAC 2 cut(s) 91, 750
FatI CATG 9 cut(s) 147, 202, 226, 418, 619, 704, 904, 1005, 1039
Fnu4HI GCNGC 4 cut(s) 38, 711, 719, 930
FokI GGATG 5 cut(s) 368, 781, 831, 880, 1022
FriOI GRGCYC 2 cut(s) 157, 996
Fsp4HI GCNGC 4 cut(s) 38, 711, 719, 930
FspBI CTAG 4 cut(s) 18, 410, 432, 477
GluI GCNGC 4 cut(s) 38, 711, 719, 930
GsuI CTGGAG 1 cut(s) 815
HaeIII GGCC 2 cut(s) 693, 994
HapII CCGG 3 cut(s) 50, 296, 839
Hin1II CATG 9 cut(s) 151, 206, 230, 422, 623, 708, 908, 1009, 1043
HincII GTYRAC 2 cut(s) 428, 856
HindII GTYRAC 2 cut(s) 428, 856
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 3 cut(s) 406, 556, 596
HpaII CCGG 3 cut(s) 50, 296, 839
HphI GGTGA 3 cut(s) 605, 662, 823
Hpy166II GTNNAC 4 cut(s) 428, 555, 856, 1077
Hpy188I TCNGA 2 cut(s) 195, 579
Hpy188III TCNNGA 2 cut(s) 839, 865
Hpy8I GTNNAC 4 cut(s) 428, 555, 856, 1077
Hpy99I CGWCG 2 cut(s) 133, 307
HpyCH4III ACNGT 2 cut(s) 168, 490
HpyCH4IV ACGT 2 cut(s) 235, 302
HpyCH4V TGCA 8 cut(s) 147, 226, 230, 418, 493, 710, 721, 944
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 1000
HpyF3I CTNAG 3 cut(s) 60, 99, 714
HpySE526I ACGT 2 cut(s) 235, 302
Hsp92II CATG 9 cut(s) 151, 206, 230, 422, 623, 708, 908, 1009, 1043
Kpn2I TCCGGA 1 cut(s) 838
LmnI GCTCC 2 cut(s) 387, 841
Lsp1109I GCAGC 4 cut(s) 49, 705, 722, 916
LweI GCATC 2 cut(s) 4, 858
MaeI CTAG 4 cut(s) 18, 410, 432, 477
MaeII ACGT 2 cut(s) 235, 302
MaeIII GTNAC 2 cut(s) 55, 1033
MboII GAAGA 3 cut(s) 224, 309, 689
MfeI CAATTG 2 cut(s) 391, 806
MhlI GDGCHC 6 cut(s) 66, 157, 245, 333, 912, 996
MluCI AATT 9 cut(s) 310, 372, 391, 531, 586, 627, 639, 806, 897
MlyI GAGTC 2 cut(s) 550, 605
MmeI TCCRAC 2 cut(s) 604, 743
MroI TCCGGA 1 cut(s) 838
MseI TTAA 6 cut(s) 347, 371, 453, 585, 638, 962
MslI CAYNNNNRTG 1 cut(s) 238
MspA1I CMGCKG 1 cut(s) 713
MspI CCGG 3 cut(s) 50, 296, 839
MspR9I CCNGG 3 cut(s) 296, 297, 794
MunI CAATTG 2 cut(s) 391, 806
MvaI CCWGG 1 cut(s) 794
MwoI GCNNNNNNNGC 2 cut(s) 46, 1000
NciI CCSGG 2 cut(s) 296, 297
NlaIII CATG 9 cut(s) 151, 206, 230, 422, 623, 708, 908, 1009, 1043
NlaIV GGNNCC 4 cut(s) 48, 837, 994, 995
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 2 cut(s) 151, 230
OliI CACNNNNGTG 1 cut(s) 238
PaeI GCATGC 1 cut(s) 230
PaqCI CACCTGC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 1029
PfeI GAWTC 1 cut(s) 406
PflFI GACNNNGTC 1 cut(s) 860
PkrI GCNGC 4 cut(s) 39, 712, 720, 931
PleI GAGTC 2 cut(s) 550, 604
PpsI GAGTC 2 cut(s) 550, 604
PshBI ATTAAT 1 cut(s) 638
Psp6I CCWGG 1 cut(s) 792
PspGI CCWGG 1 cut(s) 792
PspN4I GGNNCC 4 cut(s) 48, 837, 994, 995
PspOMI GGGCCC 1 cut(s) 992
PspPI GGNCC 2 cut(s) 992, 993
PstI CTGCAG 1 cut(s) 723
PstNI CAGNNNCTG 1 cut(s) 577
PsyI GACNNNGTC 1 cut(s) 860
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
RseI CAYNNNNRTG 1 cut(s) 238
SaqAI TTAA 6 cut(s) 347, 371, 453, 585, 638, 962
SatI GCNGC 4 cut(s) 38, 711, 719, 930
Sau96I GGNCC 2 cut(s) 992, 993
SchI GAGTC 2 cut(s) 550, 605
ScrFI CCNGG 3 cut(s) 296, 297, 794
SduI GDGCHC 6 cut(s) 66, 157, 245, 333, 912, 996
SfaNI GCATC 2 cut(s) 4, 858
SfcI CTRYAG 2 cut(s) 719, 951
SmaI CCCGGG 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 238
SphI GCATGC 1 cut(s) 230
Sse9I AATT 9 cut(s) 310, 372, 391, 531, 586, 627, 639, 806, 897
SsiI CCGC 2 cut(s) 257, 671
SspI AATATT 1 cut(s) 732
SspMI CTAG 4 cut(s) 18, 410, 432, 477
StyD4I CCNGG 3 cut(s) 294, 295, 792
TaaI ACNGT 2 cut(s) 168, 490
TaiI ACGT 2 cut(s) 238, 305
TaqI TCGA 3 cut(s) 88, 128, 305
TasI AATT 9 cut(s) 310, 372, 391, 531, 586, 627, 639, 806, 897
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 6 cut(s) 347, 371, 453, 585, 638, 962
Tru9I TTAA 6 cut(s) 347, 371, 453, 585, 638, 962
TscAI CASTG 4 cut(s) 64, 71, 1062, 1087
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 4 cut(s) 37, 710, 718, 929
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 4 cut(s) 23, 309, 377, 414
TspMI CCCGGG 1 cut(s) 295
TspRI CASTG 4 cut(s) 64, 71, 1062, 1087
Tth111I GACNNNGTC 1 cut(s) 860
VspI ATTAAT 1 cut(s) 638
XapI RAATTY 1 cut(s) 897
XceI RCATGY 2 cut(s) 151, 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 812
XmaI CCCGGG 1 cut(s) 295
XspI CTAG 4 cut(s) 18, 410, 432, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.