ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 70 - 192 | 4.1e-21 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 170, 428 |
| AclWI | GGATC | 1 cut(s) | 185 |
| AcuI | CTGAAG | 1 cut(s) | 357 |
| AfaI | GTAC | 1 cut(s) | 356 |
| AgsI | TTSAA | 6 cut(s) | 404, 479, 496, 518, 580, 588 |
| AluBI | AGCT | 5 cut(s) | 113, 205, 293, 470, 503 |
| AluI | AGCT | 5 cut(s) | 113, 205, 293, 470, 503 |
| Alw21I | GWGCWC | 1 cut(s) | 295 |
| AlwI | GGATC | 1 cut(s) | 185 |
| Ama87I | CYCGRG | 1 cut(s) | 567 |
| AoxI | GGCC | 2 cut(s) | 323, 613 |
| ApeKI | GCWGC | 3 cut(s) | 218, 413, 551 |
| AspS9I | GGNCC | 2 cut(s) | 177, 614 |
| AsuHPI | GGTGA | 1 cut(s) | 409 |
| AvaI | CYCGRG | 1 cut(s) | 567 |
| AvaII | GGWCC | 1 cut(s) | 177 |
| BanII | GRGCYC | 1 cut(s) | 295 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 267, 299 |
| Bbv12I | GWGCWC | 1 cut(s) | 295 |
| BbvI | GCAGC | 3 cut(s) | 205, 425, 538 |
| BfaI | CTAG | 1 cut(s) | 534 |
| BisI | GCNGC | 4 cut(s) | 219, 414, 429, 552 |
| BlpI | GCTNAGC | 1 cut(s) | 162 |
| BlsI | GCNGC | 4 cut(s) | 220, 415, 430, 553 |
| Bme18I | GGWCC | 1 cut(s) | 177 |
| BmeT110I | CYCGRG | 1 cut(s) | 567 |
| BmgT120I | GGNCC | 2 cut(s) | 177, 614 |
| BmiI | GGNNCC | 1 cut(s) | 179 |
| BmsI | GCATC | 2 cut(s) | 205, 310 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 162 |
| BpuEI | CTTGAG | 1 cut(s) | 185 |
| BsaBI | GATNNNNATC | 1 cut(s) | 450 |
| BsaJI | CCNNGG | 1 cut(s) | 620 |
| Bse8I | GATNNNNATC | 1 cut(s) | 450 |
| BseDI | CCNNGG | 1 cut(s) | 620 |
| BseJI | GATNNNNATC | 1 cut(s) | 450 |
| BseMII | CTCAG | 2 cut(s) | 153, 469 |
| BseXI | GCAGC | 3 cut(s) | 205, 425, 538 |
| BsgI | GTGCAG | 1 cut(s) | 276 |
| BshFI | GGCC | 2 cut(s) | 325, 615 |
| BsiHKAI | GWGCWC | 1 cut(s) | 295 |
| BsiHKCI | CYCGRG | 1 cut(s) | 567 |
| BslFI | GGGAC | 1 cut(s) | 163 |
| BsmFI | GGGAC | 1 cut(s) | 163 |
| BsnI | GGCC | 2 cut(s) | 325, 615 |
| BsoBI | CYCGRG | 1 cut(s) | 567 |
| Bsp1286I | GDGCHC | 1 cut(s) | 295 |
| Bsp143I | GATC | 2 cut(s) | 190, 451 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 162 |
| Bsp19I | CCATGG | 1 cut(s) | 620 |
| BspACI | CCGC | 2 cut(s) | 170, 428 |
| BspANI | GGCC | 2 cut(s) | 325, 615 |
| BspCNI | CTCAG | 2 cut(s) | 154, 468 |
| BspLI | GGNNCC | 1 cut(s) | 179 |
| BspPI | GGATC | 1 cut(s) | 185 |
| BssECI | CCNNGG | 1 cut(s) | 620 |
| BssMI | GATC | 2 cut(s) | 190, 451 |
| BssT1I | CCWWGG | 1 cut(s) | 620 |
| Bst4CI | ACNGT | 1 cut(s) | 359 |
| BstC8I | GCNNGC | 4 cut(s) | 37, 102, 168, 501 |
| BstDEI | CTNAG | 3 cut(s) | 162, 455, 657 |
| BstDSI | CCRYGG | 1 cut(s) | 620 |
| BstKTI | GATC | 2 cut(s) | 193, 454 |
| BstMBI | GATC | 2 cut(s) | 190, 451 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 110, 167, 254, 338, 572 |
| BstNSI | RCATGY | 1 cut(s) | 225 |
| BstV1I | GCAGC | 3 cut(s) | 205, 425, 538 |
| BsuRI | GGCC | 2 cut(s) | 325, 615 |
| BtgI | CCRYGG | 1 cut(s) | 620 |
| BtsI | GCAGTG | 1 cut(s) | 264 |
| BtsIMutI | CAGTG | 1 cut(s) | 264 |
| Cac8I | GCNNGC | 4 cut(s) | 37, 102, 168, 501 |
| Cfr13I | GGNCC | 2 cut(s) | 177, 614 |
| Csp6I | GTAC | 1 cut(s) | 355 |
| CviAII | CATG | 2 cut(s) | 222, 621 |
| CviQI | GTAC | 1 cut(s) | 355 |
| DdeI | CTNAG | 3 cut(s) | 162, 455, 657 |
| DpnI | GATC | 2 cut(s) | 192, 453 |
| DpnII | GATC | 2 cut(s) | 190, 451 |
| Ecl136II | GAGCTC | 1 cut(s) | 293 |
| Eco130I | CCWWGG | 1 cut(s) | 620 |
| Eco24I | GRGCYC | 1 cut(s) | 295 |
| Eco47I | GGWCC | 1 cut(s) | 177 |
| Eco53kI | GAGCTC | 1 cut(s) | 293 |
| Eco57I | CTGAAG | 1 cut(s) | 357 |
| Eco88I | CYCGRG | 1 cut(s) | 567 |
| EcoICRI | GAGCTC | 1 cut(s) | 293 |
| EcoT14I | CCWWGG | 1 cut(s) | 620 |
| EcoT22I | ATGCAT | 1 cut(s) | 303 |
| EcoT38I | GRGCYC | 1 cut(s) | 295 |
| ErhI | CCWWGG | 1 cut(s) | 620 |
| FaeI | CATG | 2 cut(s) | 225, 624 |
| FaiI | YATR | 5 cut(s) | 223, 362, 461, 593, 622 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 356, 388, 580, 612 |
| FaqI | GGGAC | 1 cut(s) | 163 |
| FatI | CATG | 2 cut(s) | 221, 620 |
| Fnu4HI | GCNGC | 4 cut(s) | 219, 414, 429, 552 |
| FriOI | GRGCYC | 1 cut(s) | 295 |
| Fsp4HI | GCNGC | 4 cut(s) | 219, 414, 429, 552 |
| FspBI | CTAG | 1 cut(s) | 534 |
| GluI | GCNGC | 4 cut(s) | 219, 414, 429, 552 |
| HaeIII | GGCC | 2 cut(s) | 325, 615 |
| Hin1II | CATG | 2 cut(s) | 225, 624 |
| HindIII | AAGCTT | 2 cut(s) | 203, 501 |
| HinfI | GANTC | 3 cut(s) | 262, 306, 529 |
| HphI | GGTGA | 1 cut(s) | 409 |
| Hpy188III | TCNNGA | 3 cut(s) | 266, 443, 569 |
| HpyAV | CCTTC | 5 cut(s) | 56, 82, 269, 385, 458 |
| HpyCH4III | ACNGT | 1 cut(s) | 359 |
| HpyCH4IV | ACGT | 1 cut(s) | 538 |
| HpyCH4V | TGCA | 7 cut(s) | 39, 100, 221, 257, 301, 379, 543 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 110, 167, 254, 338, 572 |
| HpyF3I | CTNAG | 3 cut(s) | 162, 455, 657 |
| HpySE526I | ACGT | 1 cut(s) | 538 |
| Hsp92II | CATG | 2 cut(s) | 225, 624 |
| Kzo9I | GATC | 2 cut(s) | 190, 451 |
| LmnI | GCTCC | 2 cut(s) | 290, 467 |
| LpnPI | CCDG | 3 cut(s) | 152, 160, 456 |
| Lsp1109I | GCAGC | 3 cut(s) | 205, 425, 538 |
| LweI | GCATC | 2 cut(s) | 205, 310 |
| MaeI | CTAG | 1 cut(s) | 534 |
| MaeII | ACGT | 1 cut(s) | 538 |
| MalI | GATC | 2 cut(s) | 192, 453 |
| MboI | GATC | 2 cut(s) | 190, 451 |
| MboII | GAAGA | 5 cut(s) | 34, 491, 535, 538, 656 |
| MfeI | CAATTG | 1 cut(s) | 186 |
| MhlI | GDGCHC | 1 cut(s) | 295 |
| MluCI | AATT | 4 cut(s) | 16, 186, 432, 647 |
| MnlI | CCTC | 5 cut(s) | 151, 315, 502, 565, 627 |
| Mph1103I | ATGCAT | 1 cut(s) | 303 |
| MseI | TTAA | 3 cut(s) | 45, 207, 374 |
| MunI | CAATTG | 1 cut(s) | 186 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 110, 167, 254, 338, 572 |
| NcoI | CCATGG | 1 cut(s) | 620 |
| NdeII | GATC | 2 cut(s) | 190, 451 |
| NlaIII | CATG | 2 cut(s) | 225, 624 |
| NlaIV | GGNNCC | 1 cut(s) | 179 |
| NsiI | ATGCAT | 1 cut(s) | 303 |
| NspI | RCATGY | 1 cut(s) | 225 |
| PaeR7I | CTCGAG | 1 cut(s) | 567 |
| PfeI | GAWTC | 3 cut(s) | 262, 306, 529 |
| PkrI | GCNGC | 4 cut(s) | 220, 415, 430, 553 |
| Psp124BI | GAGCTC | 1 cut(s) | 295 |
| PspN4I | GGNNCC | 1 cut(s) | 179 |
| PspPI | GGNCC | 2 cut(s) | 177, 614 |
| RsaI | GTAC | 1 cut(s) | 356 |
| RsaNI | GTAC | 1 cut(s) | 355 |
| SacI | GAGCTC | 1 cut(s) | 295 |
| SaqAI | TTAA | 3 cut(s) | 45, 207, 374 |
| SatI | GCNGC | 4 cut(s) | 219, 414, 429, 552 |
| Sau3AI | GATC | 2 cut(s) | 190, 451 |
| Sau96I | GGNCC | 2 cut(s) | 177, 614 |
| SduI | GDGCHC | 1 cut(s) | 295 |
| SetI | ASST | 9 cut(s) | 84, 115, 207, 295, 385, 396, 472, 505, 541 |
| SfaNI | GCATC | 2 cut(s) | 205, 310 |
| Sfr274I | CTCGAG | 1 cut(s) | 567 |
| SinI | GGWCC | 1 cut(s) | 177 |
| SlaI | CTCGAG | 1 cut(s) | 567 |
| SmlI | CTYRAG | 2 cut(s) | 200, 567 |
| SmoI | CTYRAG | 2 cut(s) | 200, 567 |
| Sse9I | AATT | 4 cut(s) | 16, 186, 432, 647 |
| SsiI | CCGC | 2 cut(s) | 170, 428 |
| SspMI | CTAG | 1 cut(s) | 534 |
| SstI | GAGCTC | 1 cut(s) | 295 |
| StyI | CCWWGG | 1 cut(s) | 620 |
| TaaI | ACNGT | 1 cut(s) | 359 |
| TaiI | ACGT | 1 cut(s) | 541 |
| TaqI | TCGA | 2 cut(s) | 304, 568 |
| TasI | AATT | 4 cut(s) | 16, 186, 432, 647 |
| TauI | GCSGC | 1 cut(s) | 431 |
| TfiI | GAWTC | 3 cut(s) | 262, 306, 529 |
| Tru1I | TTAA | 3 cut(s) | 45, 207, 374 |
| Tru9I | TTAA | 3 cut(s) | 45, 207, 374 |
| TscAI | CASTG | 1 cut(s) | 264 |
| TseI | GCWGC | 3 cut(s) | 218, 413, 551 |
| TspDTI | ATGAA | 1 cut(s) | 377 |
| TspRI | CASTG | 1 cut(s) | 264 |
| VpaK11BI | GGWCC | 1 cut(s) | 177 |
| XceI | RCATGY | 1 cut(s) | 225 |
| XhoI | CTCGAG | 1 cut(s) | 567 |
| XspI | CTAG | 1 cut(s) | 534 |
| Zsp2I | ATGCAT | 1 cut(s) | 303 |