RchiOBHm_Chr4g0402201

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000072
Physical Location & Seq
Forward (+)
20709451 .. 20711337
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37402

Sequence Viewer

Length: 1758 bp
ATGCATGAACGACTTGACCATCATTTGAAGGGGTGGCAGAACAAGCTACTTTCAAAAGCGGGCAAGGCTGTTCTTATAAAGGCAGTAGCTCAGGCGATTCCGACTTTCACTATGTCTGTTTTTATGCTGCCCAAAGGAGTGTGTCGGATGTATCAATCAAAAGTTGCTAAGTACTGGTGGGGTAACAGTGGAGGTAAACGTGGAATTCATTGGAGTACTTGGGAGGTTCTTTGTAAGCATAAAAACGATGGGGGGTTGGGCTTTAGAGATATTGGATGCTTCAACCAGGCCATTCTGGCTAAAACTGTTTGGAGGTTGATTTTAAACCCAGAGTTGCTTGCTTGCAAGATTCTTTATGCCAAATACTTTGCTGGTTCGAGCTGGGCGGAAGTAAGAATGGGGGCAAAACCATCTTTTATTTGGAAGAGTCTGCTATGGGGACGAGATTTGATTTGCAGTGGCACTAGATGGAGGATTGGCTCAGGAGAGGCAGTTGGGATATGGACGGATAAATGGCTTCCATCACCTTGGAGCTTTCAAATCATAACACCTGCTTTTTTACCAAGGGACACCAGGGTTAAGAGGCTGATGCTGCAGCCAGAGAAGATATTATCTATACCTCTGAGTAGCAGAGCTGTTGGGGATGTTGTTATTTGGCATTACACTAAGACTGGACATTACACAGTCAAATCTGGGTACTGGTTGGGGATGGAATGGAAGCAGATGAAGTTGGGAGCAGGGAGTAGTGGCAGAATGGGTGTTTCAAACTCCAATTCTCTCTGGAGTAAGATCTGGAGCTTACAAGTTCCTTCTAAAGTCAAGTTACTCTTATGGAGAGCTTGCCACTCGTTCTTGCCTTGTGTTGAGCGTTTGGTGAAACGCAGGATTTGTTCCCAATCGGTGTGTGCAAGATGTGGAGAGGCGGATGAGACTGTGATTCACTGCCTCTGGGAGTGCAGGGTGGTTAGAAAAATCTGGAAATTATCTTGGATGTGGCCAGTTTACAAGATCTGGAAGGAACCTTCATTTATGGACCTGTTTGCCCACGTGTTGGCTTCAGAACAAGCTGAGCAGGTGGAACTGTTTGGGCTCCTTATATGGTGGATTTGGAAAGACCGAAACAACTTTATTCATAGGCAAACATCTTTGGACCCAAGTGAGCTGCTTCGAAAATGTAGTGATTGGCAGAGAGAACTGAAGCAAGTGTGGGAAAAGAAACAAGCACACAAGCATAATGTTAGGTCGAAGAATCAGTTGGAGGTGAAATGGGAAAGGCCCCCACCGCAATGGTGTAAACTGAATTTCGACGGAGCTTGTGAGGCTAATGGGGGAAATTCTGGGCTGGGTGCAGTGATCAGAAATGAGTTGGGTGAGTTGGTGGGTGCTTTAGCAGTGCCTTTTGCAGCGACTTTGAAACCAAGTGCAGTTGAAGCTTTGGCTCTGCAGGAAGGGCTGAGGTACTCCAGATTGTTGGGAATCAGGAATTTGGAAGTTGAAGGAGATGCATTATGTATCATTAATTCACTTTCACAAACTGAAAATGATTTGACTGAGATTGGGGCTGTGTTGGAGGGAGTTCGTCTACTGCTGCAGGAGTTTGAGTTCGTGAATTGGAAACATGTTCGTAAAAAAGCCAATCAAGTAGCTCATGAATTGGCTAGATCAGCTTTGAAGAGTGTCCAGTCCATGTTTTGCAGGGAGCGTGGTCCTCCTTGGCTTAGTGAGTTAGTTGAGGCAACAAATGATGTTAGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

585

Amino Acids

66.94

Weight (kDa)

9.6

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 256 - 326 1.2e-13 zinc-binding in reverse transcriptase
RVT_3 PF13456 434 - 556 5.4e-24 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
AarI CACCTGC 2 cut(s) 559, 1063
Acc36I ACCTGC 2 cut(s) 559, 1063
AccB7I CCANNNNNTGG 1 cut(s) 1051
AccI GTMKAC 1 cut(s) 1582
AciI CCGC 4 cut(s) 59, 386, 923, 1283
AcoI YGGCCR 1 cut(s) 995
AcsI RAATTY 4 cut(s) 204, 1300, 1333, 1483
AcuI CTGAAG 2 cut(s) 1041, 1217
AcvI CACGTG 1 cut(s) 1048
AfaI GTAC 4 cut(s) 173, 217, 698, 1460
AfiI CCNNNNNNNGG 1 cut(s) 1051
AflIII ACRYGT 2 cut(s) 1047, 1618
AgsI TTSAA 9 cut(s) 28, 54, 283, 539, 765, 1414, 1430, 1496, 1672
AjnI CCWGG 2 cut(s) 285, 572
AjuI GAANNNNNNNTTGG 2 cut(s) 1238, 1270
AloI GAACNNNNNNTCC 2 cut(s) 1586, 1618
Alw26I GTCTC 1 cut(s) 923
AoxI GGCC 3 cut(s) 288, 995, 1274
ApeKI GCWGC 6 cut(s) 127, 592, 595, 1162, 1403, 1588
ApoI RAATTY 4 cut(s) 204, 1300, 1333, 1483
AseI ATTAAT 1 cut(s) 1518
AspS9I GGNCC 4 cut(s) 1033, 1150, 1275, 1706
AsuHPI GGTGA 4 cut(s) 516, 886, 1273, 1382
AsuII TTCGAA 1 cut(s) 1168
AvaII GGWCC 3 cut(s) 1033, 1150, 1706
BalI TGGCCA 1 cut(s) 997
BanII GRGCYC 1 cut(s) 1092
BbrPI CACGTG 1 cut(s) 1048
BbvCI CCTCAGC 1 cut(s) 1454
BbvI GCAGC 6 cut(s) 114, 579, 607, 1149, 1415, 1575
BccI CCATC 6 cut(s) 27, 242, 418, 462, 529, 703
BciT130I CCWGG 2 cut(s) 287, 574
BclI TGATCA 1 cut(s) 1353
BcoDI GTCTC 1 cut(s) 923
BfaI CTAG 2 cut(s) 465, 1659
BfmI CTRYAG 3 cut(s) 593, 1442, 1589
BfuAI ACCTGC 2 cut(s) 559, 1063
BglI GCCNNNNNGGC 1 cut(s) 296
BglII AGATCT 2 cut(s) 789, 1008
BisI GCNGC 6 cut(s) 128, 593, 596, 1163, 1404, 1589
BlpI GCTNAGC 1 cut(s) 1068
BlsI GCNGC 6 cut(s) 129, 594, 597, 1164, 1405, 1590
BmcAI AGTACT 2 cut(s) 173, 217
Bme1390I CCNGG 2 cut(s) 287, 574
Bme18I GGWCC 3 cut(s) 1033, 1150, 1706
BmgT120I GGNCC 4 cut(s) 1033, 1150, 1275, 1706
BmiI GGNNCC 4 cut(s) 1020, 1091, 1152, 1277
BmrFI CCNGG 2 cut(s) 287, 574
BmsI GCATC 3 cut(s) 266, 579, 1492
BpmI CTGGAG 3 cut(s) 802, 814, 1447
Bpu10I CCTNAGC 3 cut(s) 90, 481, 1454
Bpu1102I GCTNAGC 1 cut(s) 1068
Bpu14I TTCGAA 1 cut(s) 1168
BsaAI YACGTR 1 cut(s) 1048
BsaJI CCNNGG 4 cut(s) 527, 563, 573, 1712
BsaXI ACNNNNNCTCC 4 cut(s) 477, 507, 1586, 1616
Bsc4I CCNNNNNNNGG 1 cut(s) 1051
Bse1I ACTGG 5 cut(s) 179, 676, 704, 998, 1681
Bse3DI GCAATG 1 cut(s) 1292
BseBI CCWGG 2 cut(s) 287, 574
BseDI CCNNGG 4 cut(s) 527, 563, 573, 1712
BseGI GGATG 6 cut(s) 153, 281, 649, 714, 931, 996
BseLI CCNNNNNNNGG 1 cut(s) 1051
BseMI GCAATG 1 cut(s) 1292
BseMII CTCAG 6 cut(s) 104, 495, 614, 1059, 1445, 1542
BseNI ACTGG 5 cut(s) 179, 676, 704, 998, 1681
BseXI GCAGC 6 cut(s) 114, 579, 607, 1149, 1415, 1575
BseYI CCCAGC 2 cut(s) 381, 1342
BsgI GTGCAG 3 cut(s) 976, 1368, 1443
BshFI GGCC 3 cut(s) 290, 997, 1276
BslFI GGGAC 2 cut(s) 453, 581
BslI CCNNNNNNNGG 1 cut(s) 1051
BsmAI GTCTC 1 cut(s) 923
BsmFI GGGAC 2 cut(s) 453, 581
BsnI GGCC 3 cut(s) 290, 997, 1276
Bsp119I TTCGAA 1 cut(s) 1168
Bsp1286I GDGCHC 1 cut(s) 1092
Bsp143I GATC 4 cut(s) 789, 1008, 1353, 1661
Bsp1720I GCTNAGC 1 cut(s) 1068
BspACI CCGC 4 cut(s) 59, 386, 923, 1283
BspANI GGCC 3 cut(s) 290, 997, 1276
BspCNI CTCAG 6 cut(s) 103, 494, 615, 1060, 1446, 1543
BspHI TCATGA 1 cut(s) 1648
BspLI GGNNCC 4 cut(s) 1020, 1091, 1152, 1277
BspMAI CTGCAG 3 cut(s) 597, 1446, 1593
BspMI ACCTGC 2 cut(s) 559, 1063
BspT104I TTCGAA 1 cut(s) 1168
BsrDI GCAATG 1 cut(s) 1292
BsrI ACTGG 5 cut(s) 179, 676, 704, 998, 1681
BssECI CCNNGG 4 cut(s) 527, 563, 573, 1712
BssMI GATC 4 cut(s) 789, 1008, 1353, 1661
BssT1I CCWWGG 3 cut(s) 527, 563, 1712
Bst2UI CCWGG 2 cut(s) 287, 574
Bst4CI ACNGT 5 cut(s) 188, 307, 685, 934, 1083
Bst6I CTCTTC 2 cut(s) 419, 1667
BstBAI YACGTR 1 cut(s) 1048
BstBI TTCGAA 1 cut(s) 1168
BstC8I GCNNGC 4 cut(s) 61, 339, 343, 841
BstDEI CTNAG 9 cut(s) 90, 168, 481, 623, 666, 1068, 1454, 1551, 1718
BstF5I GGATG 6 cut(s) 153, 281, 649, 714, 931, 996
BstKTI GATC 4 cut(s) 792, 1011, 1356, 1664
BstMAI GTCTC 1 cut(s) 923
BstMBI GATC 4 cut(s) 789, 1008, 1353, 1661
BstMWI GCNNNNNNNGC 9 cut(s) 43, 65, 296, 592, 1282, 1319, 1430, 1450, 1664
BstNI CCWGG 2 cut(s) 287, 574
BstNSI RCATGY 1 cut(s) 1622
BstSCI CCNGG 2 cut(s) 285, 572
BstSFI CTRYAG 3 cut(s) 593, 1442, 1589
BstV1I GCAGC 6 cut(s) 114, 579, 607, 1149, 1415, 1575
BstX2I RGATCY 2 cut(s) 789, 1008
BstXI CCANNNNNNTGG 3 cut(s) 528, 1287, 1471
BstYI RGATCY 2 cut(s) 789, 1008
BsuRI GGCC 3 cut(s) 290, 997, 1276
BtsCI GGATG 6 cut(s) 153, 281, 649, 714, 931, 996
BtsI GCAGTG 4 cut(s) 463, 940, 1356, 1398
BtsIMutI CAGTG 5 cut(s) 193, 463, 940, 1356, 1398
BveI ACCTGC 2 cut(s) 559, 1063
Cac8I GCNNGC 4 cut(s) 61, 339, 343, 841
CciI TCATGA 1 cut(s) 1648
Cfr13I GGNCC 4 cut(s) 1033, 1150, 1275, 1706
Csp6I GTAC 4 cut(s) 172, 216, 697, 1459
CviAII CATG 4 cut(s) 5, 1619, 1649, 1687
CviQI GTAC 4 cut(s) 172, 216, 697, 1459
DdeI CTNAG 9 cut(s) 90, 168, 481, 623, 666, 1068, 1454, 1551, 1718
DpnI GATC 4 cut(s) 791, 1010, 1355, 1663
DpnII GATC 4 cut(s) 789, 1008, 1353, 1661
DraI TTTAAA 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 995
Eam1104I CTCTTC 2 cut(s) 419, 1667
EarI CTCTTC 2 cut(s) 419, 1667
EciI GGCGGA 2 cut(s) 401, 938
Eco130I CCWWGG 3 cut(s) 527, 563, 1712
Eco24I GRGCYC 1 cut(s) 1092
Eco47I GGWCC 3 cut(s) 1033, 1150, 1706
Eco57I CTGAAG 2 cut(s) 1041, 1217
Eco72I CACGTG 1 cut(s) 1048
EcoO109I RGGNCCY 1 cut(s) 1275
EcoRI GAATTC 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 285, 572
EcoT14I CCWWGG 3 cut(s) 527, 563, 1712
EcoT22I ATGCAT 2 cut(s) 6, 1507
EcoT38I GRGCYC 1 cut(s) 1092
ErhI CCWWGG 3 cut(s) 527, 563, 1712
FaeI CATG 4 cut(s) 8, 1622, 1652, 1690
FalI AAGNNNNNCTT 2 cut(s) 812, 844
FaqI GGGAC 2 cut(s) 453, 581
FatI CATG 4 cut(s) 4, 1618, 1648, 1686
FauI CCCGC 1 cut(s) 52
FbaI TGATCA 1 cut(s) 1353
FblI GTMKAC 1 cut(s) 1582
Fnu4HI GCNGC 6 cut(s) 128, 593, 596, 1163, 1404, 1589
FokI GGATG 6 cut(s) 160, 288, 656, 721, 938, 1003
FriOI GRGCYC 1 cut(s) 1092
Fsp4HI GCNGC 6 cut(s) 128, 593, 596, 1163, 1404, 1589
FspBI CTAG 2 cut(s) 465, 1659
GluI GCNGC 6 cut(s) 128, 593, 596, 1163, 1404, 1589
GsaI CCCAGC 2 cut(s) 385, 1346
GsuI CTGGAG 3 cut(s) 802, 814, 1447
HaeIII GGCC 3 cut(s) 290, 997, 1276
Hin1II CATG 4 cut(s) 8, 1622, 1652, 1690
HindIII AAGCTT 1 cut(s) 1431
HinfI GANTC 6 cut(s) 97, 349, 427, 937, 1249, 1476
HphI GGTGA 4 cut(s) 516, 886, 1273, 1382
Hpy166II GTNNAC 4 cut(s) 197, 1003, 1295, 1583
Hpy188I TCNGA 5 cut(s) 102, 147, 624, 1060, 1358
Hpy188III TCNNGA 9 cut(s) 483, 781, 793, 976, 1012, 1464, 1480, 1606, 1649
Hpy8I GTNNAC 4 cut(s) 197, 1003, 1295, 1583
Hpy99I CGWCG 1 cut(s) 1310
HpyAV CCTTC 6 cut(s) 22, 819, 1009, 1032, 1442, 1490
HpyCH4III ACNGT 5 cut(s) 188, 307, 685, 934, 1083
HpyCH4IV ACGT 2 cut(s) 199, 1047
HpyF10VI GCNNNNNNNGC 9 cut(s) 43, 65, 296, 592, 1282, 1319, 1430, 1450, 1664
HpyF3I CTNAG 9 cut(s) 90, 168, 481, 623, 666, 1068, 1454, 1551, 1718
HpySE526I ACGT 2 cut(s) 199, 1047
Hsp92II CATG 4 cut(s) 8, 1622, 1652, 1690
Ksp22I TGATCA 1 cut(s) 1353
Kzo9I GATC 4 cut(s) 789, 1008, 1353, 1661
LmnI GCTCC 6 cut(s) 531, 734, 795, 1095, 1310, 1699
Lsp1109I GCAGC 6 cut(s) 114, 579, 607, 1149, 1415, 1575
LweI GCATC 3 cut(s) 266, 579, 1492
MaeI CTAG 2 cut(s) 465, 1659
MaeII ACGT 2 cut(s) 199, 1047
MaeIII GTNAC 2 cut(s) 182, 822
MalI GATC 4 cut(s) 791, 1010, 1355, 1663
MboI GATC 4 cut(s) 789, 1008, 1353, 1661
MboII GAAGA 4 cut(s) 436, 616, 1258, 1684
MflI RGATCY 2 cut(s) 789, 1008
MhlI GDGCHC 1 cut(s) 1092
MlsI TGGCCA 1 cut(s) 997
MluCI AATT 9 cut(s) 204, 772, 980, 1300, 1333, 1483, 1519, 1609, 1652
MluNI TGGCCA 1 cut(s) 997
MlyI GAGTC 1 cut(s) 436
MmeI TCCRAC 4 cut(s) 125, 125, 1236, 1548
Mox20I TGGCCA 1 cut(s) 997
Mph1103I ATGCAT 2 cut(s) 6, 1507
MscI TGGCCA 1 cut(s) 997
MseI TTAA 3 cut(s) 323, 579, 1518
MslI CAYNNNNRTG 1 cut(s) 1285
Msp20I TGGCCA 1 cut(s) 997
MspR9I CCNGG 2 cut(s) 287, 574
MvaI CCWGG 2 cut(s) 287, 574
MwoI GCNNNNNNNGC 9 cut(s) 43, 65, 296, 592, 1282, 1319, 1430, 1450, 1664
NdeII GATC 4 cut(s) 789, 1008, 1353, 1661
NlaIII CATG 4 cut(s) 8, 1622, 1652, 1690
NlaIV GGNNCC 4 cut(s) 1020, 1091, 1152, 1277
NsiI ATGCAT 2 cut(s) 6, 1507
NspI RCATGY 1 cut(s) 1622
NspV TTCGAA 1 cut(s) 1168
PagI TCATGA 1 cut(s) 1648
PaqCI CACCTGC 2 cut(s) 559, 1063
PciI ACATGT 1 cut(s) 1618
PfeI GAWTC 5 cut(s) 97, 349, 937, 1249, 1476
PflMI CCANNNNNTGG 1 cut(s) 1051
PkrI GCNGC 6 cut(s) 129, 594, 597, 1164, 1405, 1590
PleI GAGTC 1 cut(s) 435
PmaCI CACGTG 1 cut(s) 1048
PmlI CACGTG 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 435
Ppu21I YACGTR 1 cut(s) 1048
PscI ACATGT 1 cut(s) 1618
PshBI ATTAAT 1 cut(s) 1518
PsiI TTATAA 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 285, 572
PspCI CACGTG 1 cut(s) 1048
PspFI CCCAGC 2 cut(s) 381, 1342
PspGI CCWGG 2 cut(s) 285, 572
PspN4I GGNNCC 4 cut(s) 1020, 1091, 1152, 1277
PspPI GGNCC 4 cut(s) 1033, 1150, 1275, 1706
PstI CTGCAG 3 cut(s) 597, 1446, 1593
PsuI RGATCY 2 cut(s) 789, 1008
RsaI GTAC 4 cut(s) 173, 217, 698, 1460
RsaNI GTAC 4 cut(s) 172, 216, 697, 1459
RseI CAYNNNNRTG 1 cut(s) 1285
SaqAI TTAA 3 cut(s) 323, 579, 1518
SatI GCNGC 6 cut(s) 128, 593, 596, 1163, 1404, 1589
Sau3AI GATC 4 cut(s) 789, 1008, 1353, 1661
Sau96I GGNCC 4 cut(s) 1033, 1150, 1275, 1706
ScaI AGTACT 2 cut(s) 173, 217
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 2 cut(s) 287, 574
SduI GDGCHC 1 cut(s) 1092
SfaNI GCATC 3 cut(s) 266, 579, 1492
SfcI CTRYAG 3 cut(s) 593, 1442, 1589
SfuI TTCGAA 1 cut(s) 1168
SinI GGWCC 3 cut(s) 1033, 1150, 1706
SmiMI CAYNNNNRTG 1 cut(s) 1285
Sse9I AATT 9 cut(s) 204, 772, 980, 1300, 1333, 1483, 1519, 1609, 1652
SsiI CCGC 4 cut(s) 59, 386, 923, 1283
SspMI CTAG 2 cut(s) 465, 1659
StyD4I CCNGG 2 cut(s) 285, 572
StyI CCWWGG 3 cut(s) 527, 563, 1712
TaaI ACNGT 5 cut(s) 188, 307, 685, 934, 1083
TaiI ACGT 2 cut(s) 202, 1050
TaqI TCGA 4 cut(s) 377, 1168, 1244, 1305
TaqII GACCGA 1 cut(s) 1131
TasI AATT 9 cut(s) 204, 772, 980, 1300, 1333, 1483, 1519, 1609, 1652
TatI WGTACW 2 cut(s) 171, 215
TfiI GAWTC 5 cut(s) 97, 349, 937, 1249, 1476
Tru1I TTAA 3 cut(s) 323, 579, 1518
Tru9I TTAA 3 cut(s) 323, 579, 1518
TscAI CASTG 5 cut(s) 193, 463, 947, 1356, 1398
TseI GCWGC 6 cut(s) 127, 592, 595, 1162, 1403, 1588
TspDTI ATGAA 6 cut(s) 21, 197, 740, 1014, 1121, 1665
TspGWI ACGGA 2 cut(s) 521, 1323
TspRI CASTG 5 cut(s) 193, 463, 947, 1356, 1398
Van91I CCANNNNNTGG 1 cut(s) 1051
VpaK11BI GGWCC 3 cut(s) 1033, 1150, 1706
VspI ATTAAT 1 cut(s) 1518
XapI RAATTY 4 cut(s) 204, 1300, 1333, 1483
XceI RCATGY 1 cut(s) 1622
XcmI CCANNNNNNNNNTGG 1 cut(s) 417
XmiI GTMKAC 1 cut(s) 1582
XspI CTAG 2 cut(s) 465, 1659
ZrmI AGTACT 2 cut(s) 173, 217
Zsp2I ATGCAT 2 cut(s) 6, 1507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.