Rorug04G0036300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000072
Physical Location & Seq
Reverse (-)
5409813 .. 5418450
8638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0036300.1

Sequence Viewer

Length: 1398 bp
ATGCCTCTCAGATTCTCTCTCTCATCACTCATCGTGCTCTGTTCCTTCACTGCAATCTTAGCCCACAACAATGAAGACCCAACAATCAAAACAATGGAGGACTTCTCAGGCTACCCAATTCACGAGTCACACTCTCATCTTTCTTCACTATCAGTTGACGCTCAAAGTTTACAGAAACAGATTGATGAACTTTCGAGTTTTTCGGATACACCTGCCCCATCAGTGACCAGGGTCTTGTATACTGAGAAGGATGTGTTGGCACGTAGATTCATTAAAAACTTGATGGGACTCTCTGGTTTGTCCGTTAGAGAGGATGCTGTTGGTAACATATTTGGTCGATGGGAAGGCTCTAATCCAGAGCTTTCTGCCGTTGCAACAGGTTCTCACATTGATGCCATTCCATACTCTGGAAAGTATGATGGAGTTGTGGGTGTTTTGGGTGCTATAGAAGCGATCAATGTACTAATAAGGTCCGGGTTCAAACCTAAACGATCACTAGAAGTTATCATGTTCACCTCAGAAGAGCCTACACGCTTTGGAATAAGCTGTCTGGGAAGCCGCTTAATGGCAGGGAGTGAGACACTTGCTGAAGCTCTCAAGACCACAGTTGATGGTCAAAATATATCCTTCCTAGATGCATCACAATCTGCTGGCTACACTAAAGATCATAATGATATCTCTAGTGTGTTCTTGAAAAAAGGAAGCTACTCTGCTTTTGTGGAATTGCATATCGAGCAGGGCCCTCTTTTGGAGGAGGAAGGTATACCAATTGGCATTGTAACTGCCATTGCAGCCCCAGCAAGCATAAAAGTGGAGTTTCAGGGAAATGGAGGCCATGCTGGTGCTGTCCTGATGCCAAATAGAAATGATGCTGGACTAGCAGCTGCAGAATTAGCGCTAGCAGTGGAGAGACATGTATTAGAATCTGGATCTATTGATACTGTTGGTACAGTTGGTATTCTGGACCTACACCCCGGAGCCATCAACAGCATCCCAAGCAAATCACATCTGGAAATCGACACAAGAGACATTGATGAAGAGCGAAGAAACACCGTAATTGAGAAAATCCATCAATCTGCAATTTCTATAGCCAGAAAGCGGCGAGTCAGTCTATCCGAATTCAAAATCGTAAACCAGGATCCACCTGCACTTTCTGAGAAATCAATACTTGACGCAATGGTAGCTTCATCAAAAGAGCTCAACTTAACCCACAAGTTGATGATTAGCCGAGCTTACCACGATTCATTGTTCATGGCCAGAATATCCCCAATGGGCATGATATTCATTCCATGTTACAAAGGTTACAGCCATAAACCTGAAGAGTATTCCTCTACTCAGGACATATCGAATGGGGTCAAGGTATTAGCCCTGACCCTTGCAAAATTGTCATTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

465

Amino Acids

50.29

Weight (kDa)

5.7

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M28 PF04389 109 - 194 2.4e-08 Peptidase family M28
Peptidase_M20 PF01546 126 - 460 1.4e-24 Peptidase family M20/M25/M40
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 220, 1153
Acc36I ACCTGC 2 cut(s) 220, 1153
AccB7I CCANNNNNTGG 1 cut(s) 407
AccI GTMKAC 2 cut(s) 239, 763
AciI CCGC 2 cut(s) 559, 1099
AclWI GGATC 3 cut(s) 937, 1133, 1146
AcoI YGGCCR 1 cut(s) 1254
AcsI RAATTY 1 cut(s) 1118
AcuI CTGAAG 2 cut(s) 609, 1338
AfaI GTAC 2 cut(s) 462, 949
AfeI AGCGCT 1 cut(s) 897
AfiI CCNNNNNNNGG 4 cut(s) 407, 565, 748, 1098
AflIII ACRYGT 1 cut(s) 913
AgsI TTSAA 3 cut(s) 481, 694, 1123
AjnI CCWGG 2 cut(s) 227, 1134
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 8 cut(s) 361, 546, 593, 705, 884, 1184, 1198, 1232
AluI AGCT 8 cut(s) 361, 546, 593, 705, 884, 1184, 1198, 1232
Alw21I GWGCWC 2 cut(s) 39, 1200
Alw26I GTCTC 3 cut(s) 572, 904, 1020
AlwI GGATC 3 cut(s) 937, 1133, 1146
Aor51HI AGCGCT 1 cut(s) 897
AoxI GGCC 3 cut(s) 739, 832, 1254
ApaI GGGCCC 1 cut(s) 743
ApeKI GCWGC 3 cut(s) 791, 881, 884
ApoI RAATTY 1 cut(s) 1118
AspLEI GCGC 1 cut(s) 898
AspS9I GGNCC 4 cut(s) 471, 739, 740, 964
AsuC2I CCSGG 2 cut(s) 475, 975
AsuHPI GGTGA 1 cut(s) 505
AsuNHI GCTAGC 1 cut(s) 898
AvaII GGWCC 2 cut(s) 471, 964
BaeGI GKGCMC 1 cut(s) 743
BalI TGGCCA 1 cut(s) 1256
BamHI GGATCC 1 cut(s) 1138
BanII GRGCYC 2 cut(s) 743, 1200
BauI CACGAG 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 2 cut(s) 39, 1200
BbvI GCAGC 3 cut(s) 803, 871, 893
BccI CCATC 7 cut(s) 226, 277, 333, 413, 605, 989, 1077
BceAI ACGGC 1 cut(s) 353
BciT130I CCWGG 2 cut(s) 229, 1136
BciVI GTATCC 1 cut(s) 199
BcnI CCSGG 2 cut(s) 475, 975
BcoDI GTCTC 3 cut(s) 572, 904, 1020
BfaI CTAG 5 cut(s) 497, 632, 681, 878, 899
BfmI CTRYAG 3 cut(s) 444, 885, 1086
BfoI RGCGCY 1 cut(s) 899
BfuAI ACCTGC 2 cut(s) 220, 1153
BfuI GTATCC 1 cut(s) 199
BisI GCNGC 5 cut(s) 559, 792, 882, 885, 1100
BlsI GCNGC 5 cut(s) 560, 793, 883, 886, 1101
Bme1390I CCNGG 4 cut(s) 229, 475, 975, 1136
Bme18I GGWCC 2 cut(s) 471, 964
BmgT120I GGNCC 4 cut(s) 471, 739, 740, 964
BmiI GGNNCC 3 cut(s) 741, 979, 1140
BmrFI CCNGG 4 cut(s) 229, 475, 975, 1136
BmsI GCATC 7 cut(s) 304, 382, 625, 647, 843, 859, 999
BmtI GCTAGC 1 cut(s) 902
BoxI GACNNNNGTC 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 81
BplI GAGNNNNNCTC 6 cut(s) 89, 121, 116, 148, 1313, 1345
BpuEI CTTGAG 1 cut(s) 581
BpuMI CCSGG 2 cut(s) 475, 975
BsaAI YACGTR 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 228, 973
Bsc4I CCNNNNNNNGG 4 cut(s) 407, 565, 748, 1098
Bse3DI GCAATG 3 cut(s) 786, 1182, 1388
BseBI CCWGG 2 cut(s) 229, 1136
BseDI CCNNGG 2 cut(s) 228, 973
BseGI GGATG 3 cut(s) 256, 319, 990
BseLI CCNNNNNNNGG 4 cut(s) 407, 565, 748, 1098
BseMI GCAATG 3 cut(s) 786, 1182, 1388
BseMII CTCAG 6 cut(s) 22, 120, 234, 531, 1146, 1349
BseRI GAGGAG 1 cut(s) 767
BseSI GKGCMC 1 cut(s) 743
BseXI GCAGC 3 cut(s) 803, 871, 893
BseYI CCCAGC 1 cut(s) 796
BsgI GTGCAG 1 cut(s) 1131
BshFI GGCC 3 cut(s) 741, 834, 1256
BsiHKAI GWGCWC 2 cut(s) 39, 1200
BsiSI CCGG 2 cut(s) 474, 975
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 4 cut(s) 407, 565, 748, 1098
BsmAI GTCTC 3 cut(s) 572, 904, 1020
BsmFI GGGAC 1 cut(s) 300
BsnI GGCC 3 cut(s) 741, 834, 1256
Bsp120I GGGCCC 1 cut(s) 739
Bsp1286I GDGCHC 3 cut(s) 39, 743, 1200
Bsp143I GATC 5 cut(s) 453, 491, 664, 929, 1138
BspACI CCGC 2 cut(s) 559, 1099
BspANI GGCC 3 cut(s) 741, 834, 1256
BspCNI CTCAG 6 cut(s) 21, 119, 235, 530, 1147, 1348
BspLI GGNNCC 3 cut(s) 741, 979, 1140
BspMAI CTGCAG 1 cut(s) 889
BspMI ACCTGC 2 cut(s) 220, 1153
BspOI GCTAGC 1 cut(s) 902
BspPI GGATC 3 cut(s) 937, 1133, 1146
BspQI GCTCTTC 2 cut(s) 516, 1032
BsrDI GCAATG 3 cut(s) 786, 1182, 1388
BssECI CCNNGG 2 cut(s) 228, 973
BssMI GATC 5 cut(s) 453, 491, 664, 929, 1138
BssNAI GTATAC 2 cut(s) 240, 764
BssSI CACGAG 1 cut(s) 122
Bst1107I GTATAC 2 cut(s) 240, 764
Bst2BI CACGAG 1 cut(s) 122
Bst2UI CCWGG 2 cut(s) 229, 1136
Bst4CI ACNGT 4 cut(s) 607, 943, 952, 1054
Bst6I CTCTTC 3 cut(s) 516, 1032, 1314
BstBAI YACGTR 1 cut(s) 263
BstC8I GCNNGC 3 cut(s) 652, 802, 900
BstDEI CTNAG 7 cut(s) 8, 58, 106, 243, 517, 1155, 1335
BstF5I GGATG 3 cut(s) 256, 319, 990
BstH2I RGCGCY 1 cut(s) 899
BstHHI GCGC 1 cut(s) 898
BstKTI GATC 5 cut(s) 456, 494, 667, 932, 1141
BstMAI GTCTC 3 cut(s) 572, 904, 1020
BstMBI GATC 5 cut(s) 453, 491, 664, 929, 1138
BstMWI GCNNNNNNNGC 9 cut(s) 59, 449, 733, 791, 797, 878, 893, 996, 1181
BstNI CCWGG 2 cut(s) 229, 1136
BstNSI RCATGY 1 cut(s) 917
BstPAI GACNNNNGTC 1 cut(s) 230
BstSCI CCNGG 4 cut(s) 227, 473, 973, 1134
BstSFI CTRYAG 3 cut(s) 444, 885, 1086
BstSLI GKGCMC 1 cut(s) 743
BstV1I GCAGC 3 cut(s) 803, 871, 893
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 2 cut(s) 929, 1138
BstYI RGATCY 2 cut(s) 929, 1138
BstZ17I GTATAC 2 cut(s) 240, 764
BsuI GTATCC 1 cut(s) 199
BsuRI GGCC 3 cut(s) 741, 834, 1256
BtsCI GGATG 3 cut(s) 256, 319, 990
BtsI GCAGTG 2 cut(s) 48, 909
BtsIMutI CAGTG 3 cut(s) 48, 228, 909
BveI ACCTGC 2 cut(s) 220, 1153
Cac8I GCNNGC 3 cut(s) 652, 802, 900
CfoI GCGC 1 cut(s) 898
Cfr13I GGNCC 4 cut(s) 471, 739, 740, 964
CseI GACGC 2 cut(s) 167, 1181
Csp6I GTAC 2 cut(s) 461, 948
CviAII CATG 6 cut(s) 508, 836, 914, 1252, 1276, 1290
CviQI GTAC 2 cut(s) 461, 948
DdeI CTNAG 7 cut(s) 8, 58, 106, 243, 517, 1155, 1335
DpnI GATC 5 cut(s) 455, 493, 666, 931, 1140
DpnII GATC 5 cut(s) 453, 491, 664, 929, 1138
EaeI YGGCCR 1 cut(s) 1254
Eam1104I CTCTTC 3 cut(s) 516, 1032, 1314
EarI CTCTTC 3 cut(s) 516, 1032, 1314
Ecl136II GAGCTC 1 cut(s) 1198
Eco24I GRGCYC 2 cut(s) 743, 1200
Eco32I GATATC 1 cut(s) 676
Eco47I GGWCC 2 cut(s) 471, 964
Eco47III AGCGCT 1 cut(s) 897
Eco53kI GAGCTC 1 cut(s) 1198
Eco57I CTGAAG 2 cut(s) 609, 1338
EcoICRI GAGCTC 1 cut(s) 1198
EcoO109I RGGNCCY 2 cut(s) 739, 740
EcoRI GAATTC 1 cut(s) 1118
EcoRII CCWGG 2 cut(s) 227, 1134
EcoRV GATATC 1 cut(s) 676
EcoT22I ATGCAT 1 cut(s) 640
EcoT38I GRGCYC 2 cut(s) 743, 1200
FaeI CATG 6 cut(s) 511, 839, 917, 1255, 1279, 1293
FaqI GGGAC 1 cut(s) 300
FatI CATG 6 cut(s) 507, 835, 913, 1251, 1275, 1289
FblI GTMKAC 2 cut(s) 239, 763
Fnu4HI GCNGC 5 cut(s) 559, 792, 882, 885, 1100
FokI GGATG 3 cut(s) 263, 326, 977
FriOI GRGCYC 2 cut(s) 743, 1200
Fsp4HI GCNGC 5 cut(s) 559, 792, 882, 885, 1100
FspBI CTAG 5 cut(s) 497, 632, 681, 878, 899
GlaI GCGC 1 cut(s) 897
GluI GCNGC 5 cut(s) 559, 792, 882, 885, 1100
GsaI CCCAGC 1 cut(s) 800
HaeII RGCGCY 1 cut(s) 899
HaeIII GGCC 3 cut(s) 741, 834, 1256
HapII CCGG 2 cut(s) 474, 975
HgaI GACGC 2 cut(s) 167, 1181
HhaI GCGC 1 cut(s) 898
Hin1II CATG 6 cut(s) 511, 839, 917, 1255, 1279, 1293
Hin6I GCGC 1 cut(s) 896
HinP1I GCGC 1 cut(s) 896
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 7 cut(s) 12, 125, 267, 288, 923, 1104, 1241
HpaII CCGG 2 cut(s) 474, 975
HphI GGTGA 1 cut(s) 505
Hpy166II GTNNAC 6 cut(s) 157, 170, 240, 513, 764, 1132
Hpy188I TCNGA 5 cut(s) 11, 205, 520, 1117, 1156
Hpy8I GTNNAC 6 cut(s) 157, 170, 240, 513, 764, 1132
HpyAV CCTTC 5 cut(s) 55, 241, 338, 637, 752
HpyCH4III ACNGT 4 cut(s) 607, 943, 952, 1054
HpyCH4IV ACGT 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 9 cut(s) 59, 449, 733, 791, 797, 878, 893, 996, 1181
HpyF3I CTNAG 7 cut(s) 8, 58, 106, 243, 517, 1155, 1335
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 6 cut(s) 511, 839, 917, 1255, 1279, 1293
HspAI GCGC 1 cut(s) 896
Kzo9I GATC 5 cut(s) 453, 491, 664, 929, 1138
LguI GCTCTTC 2 cut(s) 516, 1032
LmnI GCTCC 1 cut(s) 977
Lsp1109I GCAGC 3 cut(s) 803, 871, 893
LweI GCATC 7 cut(s) 304, 382, 625, 647, 843, 859, 999
MaeI CTAG 5 cut(s) 497, 632, 681, 878, 899
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 6 cut(s) 126, 223, 323, 778, 1292, 1301
MalI GATC 5 cut(s) 455, 493, 666, 931, 1140
MboI GATC 5 cut(s) 453, 491, 664, 929, 1138
MboII GAAGA 6 cut(s) 86, 135, 533, 1049, 1056, 1331
MfeI CAATTG 1 cut(s) 768
MflI RGATCY 2 cut(s) 929, 1138
MhlI GDGCHC 3 cut(s) 39, 743, 1200
MlsI TGGCCA 1 cut(s) 1256
MluCI AATT 8 cut(s) 117, 722, 768, 890, 1056, 1080, 1118, 1382
MluNI TGGCCA 1 cut(s) 1256
MlyI GAGTC 3 cut(s) 134, 282, 1113
MnlI CCTC 9 cut(s) 15, 91, 304, 526, 745, 748, 753, 824, 1339
Mox20I TGGCCA 1 cut(s) 1256
Mph1103I ATGCAT 1 cut(s) 640
MscI TGGCCA 1 cut(s) 1256
MseI TTAA 3 cut(s) 273, 563, 1205
MslI CAYNNNNRTG 5 cut(s) 69, 390, 809, 840, 1393
Msp20I TGGCCA 1 cut(s) 1256
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 2 cut(s) 474, 975
MspR9I CCNGG 4 cut(s) 229, 475, 975, 1136
MunI CAATTG 1 cut(s) 768
MvaI CCWGG 2 cut(s) 229, 1136
MwoI GCNNNNNNNGC 9 cut(s) 59, 449, 733, 791, 797, 878, 893, 996, 1181
NciI CCSGG 2 cut(s) 475, 975
NdeII GATC 5 cut(s) 453, 491, 664, 929, 1138
NheI GCTAGC 1 cut(s) 898
NlaIII CATG 6 cut(s) 511, 839, 917, 1255, 1279, 1293
NlaIV GGNNCC 3 cut(s) 741, 979, 1140
NmeAIII GCCGAG 1 cut(s) 1253
NmuCI GTSAC 2 cut(s) 126, 223
NsiI ATGCAT 1 cut(s) 640
NspI RCATGY 1 cut(s) 917
PaqCI CACCTGC 2 cut(s) 220, 1153
PciI ACATGT 1 cut(s) 913
PciSI GCTCTTC 2 cut(s) 516, 1032
PfeI GAWTC 4 cut(s) 12, 267, 923, 1241
PflMI CCANNNNNTGG 1 cut(s) 407
PkrI GCNGC 5 cut(s) 560, 793, 883, 886, 1101
PleI GAGTC 3 cut(s) 133, 282, 1112
PpsI GAGTC 3 cut(s) 133, 282, 1112
Ppu21I YACGTR 1 cut(s) 263
PscI ACATGT 1 cut(s) 913
PshAI GACNNNNGTC 1 cut(s) 230
Psp124BI GAGCTC 1 cut(s) 1200
Psp6I CCWGG 2 cut(s) 227, 1134
PspFI CCCAGC 1 cut(s) 796
PspGI CCWGG 2 cut(s) 227, 1134
PspN4I GGNNCC 3 cut(s) 741, 979, 1140
PspOMI GGGCCC 1 cut(s) 739
PspPI GGNCC 4 cut(s) 471, 739, 740, 964
PstI CTGCAG 1 cut(s) 889
PsuI RGATCY 2 cut(s) 929, 1138
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 2 cut(s) 462, 949
RsaNI GTAC 2 cut(s) 461, 948
RseI CAYNNNNRTG 5 cut(s) 69, 390, 809, 840, 1393
SacI GAGCTC 1 cut(s) 1200
SapI GCTCTTC 2 cut(s) 516, 1032
SaqAI TTAA 3 cut(s) 273, 563, 1205
SatI GCNGC 5 cut(s) 559, 792, 882, 885, 1100
Sau3AI GATC 5 cut(s) 453, 491, 664, 929, 1138
Sau96I GGNCC 4 cut(s) 471, 739, 740, 964
SchI GAGTC 3 cut(s) 134, 282, 1113
ScrFI CCNGG 4 cut(s) 229, 475, 975, 1136
SduI GDGCHC 3 cut(s) 39, 743, 1200
SfaNI GCATC 7 cut(s) 304, 382, 625, 647, 843, 859, 999
SfcI CTRYAG 3 cut(s) 444, 885, 1086
SinI GGWCC 2 cut(s) 471, 964
SmiMI CAYNNNNRTG 5 cut(s) 69, 390, 809, 840, 1393
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 8 cut(s) 117, 722, 768, 890, 1056, 1080, 1118, 1382
SsiI CCGC 2 cut(s) 559, 1099
SspMI CTAG 5 cut(s) 497, 632, 681, 878, 899
SstI GAGCTC 1 cut(s) 1200
StyD4I CCNGG 4 cut(s) 227, 473, 973, 1134
TaaI ACNGT 4 cut(s) 607, 943, 952, 1054
TaiI ACGT 1 cut(s) 265
TaqI TCGA 5 cut(s) 194, 337, 732, 1017, 1346
TasI AATT 8 cut(s) 117, 722, 768, 890, 1056, 1080, 1118, 1382
TatI WGTACW 1 cut(s) 460
TauI GCSGC 2 cut(s) 561, 1102
TfiI GAWTC 4 cut(s) 12, 267, 923, 1241
Tru1I TTAA 3 cut(s) 273, 563, 1205
Tru9I TTAA 3 cut(s) 273, 563, 1205
TscAI CASTG 3 cut(s) 55, 228, 909
TseFI GTSAC 2 cut(s) 126, 223
TseI GCWGC 3 cut(s) 791, 881, 884
Tsp45I GTSAC 2 cut(s) 126, 223
TspDTI ATGAA 8 cut(s) 87, 201, 259, 1050, 1176, 1233, 1240, 1273
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 3 cut(s) 55, 228, 909
Van91I CCANNNNNTGG 1 cut(s) 407
VpaK11BI GGWCC 2 cut(s) 471, 964
XapI RAATTY 1 cut(s) 1118
XceI RCATGY 1 cut(s) 917
XmiI GTMKAC 2 cut(s) 239, 763
XspI CTAG 5 cut(s) 497, 632, 681, 878, 899
Zsp2I ATGCAT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.