Rorug03G0231800

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000072
Physical Location & Seq
Reverse (-)
21402912 .. 21403922
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0231800.1

Sequence Viewer

Length: 1011 bp
ATGCAATTGACCGAGTTGATACCTGGTTTGCCCGAAGAAATAGCCTACGAGTGCCTGACTCGGCTGCACTACTCGGCCCACCGAGTCGCCTCCCGAGTCTGCCGCCGATGGGGGGAGCTCATTAAGAGCAGAGACTTCTACAACCACAGAAAGCAATACGGGTTCACCCACAAGGCCGCTTCTTTAATCCAAGCGCTTCCGGTCCGAACCGGGTCGAAGCCGGCCGGACCCGCAGTTTACGGCTTGTCTGTTTTCGACCCGGCGAGCGGGGACTGGGCCCGGGTCAACCCGGTTCCGGAGTACCCGGACGGGCTGCCGCTGTTCTGTCAGGTGACGAGCTCCGAGGGGAAGCTGGTGGTGATGGGAGGGTGGGACCCGGCGAGTTACCAGCCGGTGAGACACGTGTTCGTGTGCGAGTTCACGACGCAGCGGTGGAGTAAAGGGAAGGACATGCCGGAGGTCCGGGTGTTCTTCGCCGCCGGGGAACTGGACGGCCGGGTGTACGTCGCCGGAGGGCACGACGAGAACAAGAACGCGCTGAGGTCGGCGAGGGTTTACGACGTGAGGGCGGACGAGTGGGGCGAGCTGGGCGGGATGAGCGAGGAGCGGGACGAGTGCGAAGGGCTCGTAAACGGGTCGGAGTTTTGGGTGGTGAGCGGGTACGGTACGGACAGCCAGGGCGGGTTTGTGGGGAGCGCGGAGGTTTATGAGATCGGGTCGGGTCGTTGGAGGCGGGTCGAGGACGCGTGGAGGGCGGGTGAGTGTCCGAGGTCGTGCGTTGGGATTGGGAAGGATGGGAAGCTGTTTAGTTGGGGCGAGAGGGATTCTGCGGTGAGGTCTGGGCCGTGCGGGGTGGAGTTGGGCCGGTGGGCCTTTGTGTCCGGGTCGGAGTATCTAGGGGGACCGCATGAGTTCTTTTTGACGGGAGGGGAAAATGGGAAATTGGAGAAGGTAGAGATGTGTGAGGAGTTCTCTGGGTTCGTTCAGTCCGGTTGCTTCGTGGAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

336

Amino Acids

37.14

Weight (kDa)

5.35

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 8 - 48 2.2e-06 F-box domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 59 - 249 1.8e-10 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 82 - 195 1e-06 FBX42, beta-propeller domain
Kelch_FKB95 PF25210 94 - 260 2.4e-11 FKB95, Kelch-repeats domain
Beta-prop_Calicin PF13964 110 - 221 1.8e-08 Calicin, beta-propeller domain
Kelch_1 PF01344 155 - 199 2.3e-08 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 267, 607, 657
AccII CGCG 3 cut(s) 536, 698, 746
AccIII TCCGGA 1 cut(s) 295
AcoI YGGCCR 2 cut(s) 222, 493
AcvI CACGTG 1 cut(s) 403
AfaI GTAC 4 cut(s) 302, 503, 662, 667
AfeI AGCGCT 1 cut(s) 195
AfiI CCNNNNNNNGG 4 cut(s) 109, 112, 266, 295
AflIII ACRYGT 3 cut(s) 400, 402, 744
AjiI CACGTC 1 cut(s) 562
AjnI CCWGG 2 cut(s) 22, 675
AluBI AGCT 5 cut(s) 118, 339, 352, 586, 802
AluI AGCT 5 cut(s) 118, 339, 352, 586, 802
Alw21I GWGCWC 2 cut(s) 120, 341
Alw26I GTCTC 2 cut(s) 126, 391
Ama87I CYCGRG 2 cut(s) 93, 279
Aor13HI TCCGGA 1 cut(s) 295
Aor51HI AGCGCT 1 cut(s) 195
AoxI GGCC 8 cut(s) 75, 174, 222, 276, 493, 842, 862, 870
ApaI GGGCCC 1 cut(s) 280
ApeKI GCWGC 3 cut(s) 64, 313, 427
AspLEI GCGC 3 cut(s) 196, 538, 698
AsuHPI GGTGA 7 cut(s) 157, 343, 370, 406, 664, 770, 844
AvaI CYCGRG 2 cut(s) 93, 279
AvaII GGWCC 5 cut(s) 202, 227, 373, 460, 902
BaeGI GKGCMC 2 cut(s) 280, 519
BanII GRGCYC 4 cut(s) 120, 280, 341, 627
BbrPI CACGTG 1 cut(s) 403
Bbv12I GWGCWC 2 cut(s) 120, 341
BbvCI CCTCAGC 1 cut(s) 539
BbvI GCAGC 3 cut(s) 51, 300, 439
BccI CCATC 3 cut(s) 102, 355, 788
BceAI ACGGC 3 cut(s) 256, 508, 829
BciT130I CCWGG 2 cut(s) 24, 677
BcoDI GTCTC 2 cut(s) 126, 391
BfaI CTAG 1 cut(s) 896
BfoI RGCGCY 1 cut(s) 197
BisI GCNGC 7 cut(s) 65, 103, 177, 314, 317, 428, 477
BlsI GCNGC 7 cut(s) 66, 104, 178, 315, 318, 429, 478
Bme18I GGWCC 5 cut(s) 202, 227, 373, 460, 902
BmeT110I CYCGRG 2 cut(s) 93, 279
BmgBI CACGTC 1 cut(s) 562
BmiI GGNNCC 6 cut(s) 229, 278, 294, 374, 375, 903
BmrI ACTGGG 1 cut(s) 283
BmuI ACTGGG 1 cut(s) 283
BplI GAGNNNNNCTC 2 cut(s) 956, 988
Bpu10I CCTNAGC 1 cut(s) 539
BsaAI YACGTR 1 cut(s) 403
BsaJI CCNNGG 5 cut(s) 279, 342, 480, 676, 767
BsaWI WCCGGW 3 cut(s) 199, 295, 989
BsaXI ACNNNNNCTCC 2 cut(s) 742, 772
Bsc4I CCNNNNNNNGG 4 cut(s) 109, 112, 266, 295
Bse118I RCCGGY 3 cut(s) 220, 391, 864
Bse1I ACTGG 2 cut(s) 278, 492
BseAI TCCGGA 1 cut(s) 295
BseBI CCWGG 2 cut(s) 24, 677
BseDI CCNNGG 5 cut(s) 279, 342, 480, 676, 767
BseGI GGATG 2 cut(s) 600, 799
BseLI CCNNNNNNNGG 4 cut(s) 109, 112, 266, 295
BseMII CTCAG 1 cut(s) 530
BseNI ACTGG 2 cut(s) 278, 492
BseRI GAGGAG 2 cut(s) 617, 980
BseSI GKGCMC 2 cut(s) 280, 519
BseX3I CGGCCG 2 cut(s) 222, 493
BseXI GCAGC 3 cut(s) 51, 300, 439
BseYI CCCAGC 1 cut(s) 586
BsgI GTGCAG 1 cut(s) 50
Bsh1236I CGCG 3 cut(s) 536, 698, 746
Bsh1285I CGRYCG 2 cut(s) 225, 496
BshFI GGCC 8 cut(s) 77, 176, 224, 278, 495, 844, 864, 872
BsiEI CGRYCG 2 cut(s) 225, 496
BsiHKAI GWGCWC 2 cut(s) 120, 341
BsiHKCI CYCGRG 2 cut(s) 93, 279
BslFI GGGAC 4 cut(s) 284, 386, 623, 915
BslI CCNNNNNNNGG 4 cut(s) 109, 112, 266, 295
BsmAI GTCTC 2 cut(s) 126, 391
BsmFI GGGAC 4 cut(s) 284, 386, 623, 915
BsnI GGCC 8 cut(s) 77, 176, 224, 278, 495, 844, 864, 872
BsoBI CYCGRG 2 cut(s) 93, 279
Bsp120I GGGCCC 1 cut(s) 276
Bsp1286I GDGCHC 5 cut(s) 120, 280, 341, 519, 627
Bsp13I TCCGGA 1 cut(s) 295
Bsp143I GATC 1 cut(s) 711
BspANI GGCC 8 cut(s) 77, 176, 224, 278, 495, 844, 864, 872
BspCNI CTCAG 1 cut(s) 531
BspEI TCCGGA 1 cut(s) 295
BspFNI CGCG 3 cut(s) 536, 698, 746
BspLI GGNNCC 6 cut(s) 229, 278, 294, 374, 375, 903
BsrBI CCGCTC 3 cut(s) 267, 607, 657
BsrFI RCCGGY 3 cut(s) 220, 391, 864
BsrI ACTGG 2 cut(s) 278, 492
BssAI RCCGGY 3 cut(s) 220, 391, 864
BssECI CCNNGG 5 cut(s) 279, 342, 480, 676, 767
BssMI GATC 1 cut(s) 711
Bst2UI CCWGG 2 cut(s) 24, 677
Bst4CI ACNGT 1 cut(s) 665
BstBAI YACGTR 1 cut(s) 403
BstC8I GCNNGC 3 cut(s) 222, 265, 584
BstDEI CTNAG 1 cut(s) 539
BstF5I GGATG 2 cut(s) 600, 799
BstFNI CGCG 3 cut(s) 536, 698, 746
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 3 cut(s) 196, 538, 698
BstKTI GATC 1 cut(s) 714
BstMAI GTCTC 2 cut(s) 126, 391
BstMBI GATC 1 cut(s) 711
BstMCI CGRYCG 2 cut(s) 225, 496
BstMWI GCNNNNNNNGC 4 cut(s) 230, 588, 597, 752
BstNI CCWGG 2 cut(s) 24, 677
BstNSI RCATGY 1 cut(s) 454
BstSLI GKGCMC 2 cut(s) 280, 519
BstUI CGCG 3 cut(s) 536, 698, 746
BstV1I GCAGC 3 cut(s) 51, 300, 439
BstZI CGGCCG 2 cut(s) 222, 493
BsuRI GGCC 8 cut(s) 77, 176, 224, 278, 495, 844, 864, 872
BtrI CACGTC 1 cut(s) 562
BtsCI GGATG 2 cut(s) 600, 799
Cac8I GCNNGC 3 cut(s) 222, 265, 584
CfoI GCGC 3 cut(s) 196, 538, 698
Cfr10I RCCGGY 3 cut(s) 220, 391, 864
Cfr9I CCCGGG 1 cut(s) 279
CpoI CGGWCCG 1 cut(s) 202
CseI GACGC 2 cut(s) 433, 752
CsiI ACCWGGT 1 cut(s) 22
Csp6I GTAC 4 cut(s) 301, 502, 661, 666
CspI CGGWCCG 1 cut(s) 202
CviAII CATG 2 cut(s) 451, 908
CviQI GTAC 4 cut(s) 301, 502, 661, 666
DdeI CTNAG 1 cut(s) 539
DpnI GATC 1 cut(s) 713
DpnII GATC 1 cut(s) 711
EaeI YGGCCR 2 cut(s) 222, 493
EagI CGGCCG 2 cut(s) 222, 493
EciI GGCGGA 1 cut(s) 584
Ecl136II GAGCTC 2 cut(s) 118, 339
EclXI CGGCCG 2 cut(s) 222, 493
Eco24I GRGCYC 4 cut(s) 120, 280, 341, 627
Eco47I GGWCC 5 cut(s) 202, 227, 373, 460, 902
Eco47III AGCGCT 1 cut(s) 195
Eco52I CGGCCG 2 cut(s) 222, 493
Eco53kI GAGCTC 2 cut(s) 118, 339
Eco72I CACGTG 1 cut(s) 403
Eco88I CYCGRG 2 cut(s) 93, 279
EcoICRI GAGCTC 2 cut(s) 118, 339
EcoO109I RGGNCCY 1 cut(s) 373
EcoRII CCWGG 2 cut(s) 22, 675
EcoT38I GRGCYC 4 cut(s) 120, 280, 341, 627
FaeI CATG 2 cut(s) 454, 911
FaiI YATR 4 cut(s) 452, 708, 909, 1009
FaqI GGGAC 4 cut(s) 284, 386, 623, 915
FatI CATG 2 cut(s) 450, 907
FauI CCCGC 9 cut(s) 238, 260, 584, 600, 650, 674, 726, 748, 842
Fnu4HI GCNGC 7 cut(s) 65, 103, 177, 314, 317, 428, 477
FokI GGATG 2 cut(s) 607, 806
FriOI GRGCYC 4 cut(s) 120, 280, 341, 627
Fsp4HI GCNGC 7 cut(s) 65, 103, 177, 314, 317, 428, 477
FspBI CTAG 1 cut(s) 896
GlaI GCGC 3 cut(s) 195, 537, 697
GluI GCNGC 7 cut(s) 65, 103, 177, 314, 317, 428, 477
GsaI CCCAGC 1 cut(s) 590
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 8 cut(s) 77, 176, 224, 278, 495, 844, 864, 872
HgaI GACGC 2 cut(s) 433, 752
HhaI GCGC 3 cut(s) 196, 538, 698
Hin1II CATG 2 cut(s) 454, 911
Hin6I GCGC 3 cut(s) 194, 536, 696
HinP1I GCGC 3 cut(s) 194, 536, 696
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 4 cut(s) 58, 84, 96, 824
HphI GGTGA 7 cut(s) 157, 343, 370, 406, 664, 770, 844
Hpy166II GTNNAC 7 cut(s) 165, 238, 286, 420, 502, 556, 631
Hpy188I TCNGA 5 cut(s) 206, 343, 640, 768, 889
Hpy188III TCNNGA 3 cut(s) 93, 296, 421
Hpy8I GTNNAC 7 cut(s) 165, 238, 286, 420, 502, 556, 631
Hpy99I CGWCG 4 cut(s) 427, 509, 524, 563
HpyAV CCTTC 4 cut(s) 439, 614, 784, 943
HpyCH4III ACNGT 1 cut(s) 665
HpyCH4IV ACGT 3 cut(s) 402, 504, 561
HpyCH4V TGCA 2 cut(s) 4, 67
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 588, 597, 752
HpyF3I CTNAG 1 cut(s) 539
HpySE526I ACGT 3 cut(s) 402, 504, 561
Hsp92II CATG 2 cut(s) 454, 911
HspAI GCGC 3 cut(s) 194, 536, 696
KflI GGGWCCC 1 cut(s) 373
Kpn2I TCCGGA 1 cut(s) 295
KroI GCCGGC 1 cut(s) 220
KroNI GCCGGC 1 cut(s) 222
Kzo9I GATC 1 cut(s) 711
LmnI GCTCC 4 cut(s) 115, 344, 604, 693
Lsp1109I GCAGC 3 cut(s) 51, 300, 439
MabI ACCWGGT 1 cut(s) 22
MaeI CTAG 1 cut(s) 896
MaeII ACGT 3 cut(s) 402, 504, 561
MaeIII GTNAC 2 cut(s) 331, 383
MalI GATC 1 cut(s) 713
MbiI CCGCTC 3 cut(s) 267, 607, 657
MboI GATC 1 cut(s) 711
MboII GAAGA 2 cut(s) 47, 463
MfeI CAATTG 1 cut(s) 5
MhlI GDGCHC 5 cut(s) 120, 280, 341, 519, 627
MluCI AATT 2 cut(s) 5, 941
MluI ACGCGT 1 cut(s) 744
MlyI GAGTC 3 cut(s) 52, 93, 105
MmeI TCCRAC 3 cut(s) 618, 707, 867
MroI TCCGGA 1 cut(s) 295
MroNI GCCGGC 1 cut(s) 220
MseI TTAA 2 cut(s) 123, 185
MspA1I CMGCKG 2 cut(s) 319, 430
MunI CAATTG 1 cut(s) 5
MvaI CCWGG 2 cut(s) 24, 677
MvnI CGCG 3 cut(s) 536, 698, 746
MwoI GCNNNNNNNGC 4 cut(s) 230, 588, 597, 752
NaeI GCCGGC 1 cut(s) 222
NdeII GATC 1 cut(s) 711
NgoMIV GCCGGC 1 cut(s) 220
NlaIII CATG 2 cut(s) 454, 911
NlaIV GGNNCC 6 cut(s) 229, 278, 294, 374, 375, 903
NmeAIII GCCGAG 2 cut(s) 40, 53
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 454
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PdiI GCCGGC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 824
PkrI GCNGC 7 cut(s) 66, 104, 178, 315, 318, 429, 478
PleI GAGTC 3 cut(s) 52, 92, 104
PmaCI CACGTG 1 cut(s) 403
PmlI CACGTG 1 cut(s) 403
PpsI GAGTC 3 cut(s) 52, 92, 104
Ppu21I YACGTR 1 cut(s) 403
PpuMI RGGWCCY 1 cut(s) 373
Psp124BI GAGCTC 2 cut(s) 120, 341
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 2 cut(s) 22, 675
PspCI CACGTG 1 cut(s) 403
PspFI CCCAGC 1 cut(s) 586
PspGI CCWGG 2 cut(s) 22, 675
PspN4I GGNNCC 6 cut(s) 229, 278, 294, 374, 375, 903
PspOMI GGGCCC 1 cut(s) 276
PspPPI RGGWCCY 1 cut(s) 373
RsaI GTAC 4 cut(s) 302, 503, 662, 667
RsaNI GTAC 4 cut(s) 301, 502, 661, 666
Rsr2I CGGWCCG 1 cut(s) 202
RsrII CGGWCCG 1 cut(s) 202
SacI GAGCTC 2 cut(s) 120, 341
SaqAI TTAA 2 cut(s) 123, 185
SatI GCNGC 7 cut(s) 65, 103, 177, 314, 317, 428, 477
Sau3AI GATC 1 cut(s) 711
SchI GAGTC 3 cut(s) 52, 93, 105
SduI GDGCHC 5 cut(s) 120, 280, 341, 519, 627
SexAI ACCWGGT 1 cut(s) 22
SinI GGWCC 5 cut(s) 202, 227, 373, 460, 902
SmaI CCCGGG 1 cut(s) 281
Sse9I AATT 2 cut(s) 5, 941
SspMI CTAG 1 cut(s) 896
SstI GAGCTC 2 cut(s) 120, 341
TaaI ACNGT 1 cut(s) 665
TaiI ACGT 3 cut(s) 405, 507, 564
TaqI TCGA 3 cut(s) 215, 255, 738
TaqII GACCGA 1 cut(s) 26
TasI AATT 2 cut(s) 5, 941
TauI GCSGC 4 cut(s) 105, 179, 319, 479
TfiI GAWTC 1 cut(s) 824
Tru1I TTAA 2 cut(s) 123, 185
Tru9I TTAA 2 cut(s) 123, 185
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 3 cut(s) 64, 313, 427
Tsp45I GTSAC 1 cut(s) 331
TspGWI ACGGA 1 cut(s) 683
TspMI CCCGGG 1 cut(s) 279
VpaK11BI GGWCC 5 cut(s) 202, 227, 373, 460, 902
XceI RCATGY 1 cut(s) 454
XmaI CCCGGG 1 cut(s) 279
XspI CTAG 1 cut(s) 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.