Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 22 - 133 | 2.4e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 119 |
| AcuI | CTGAAG | 1 cut(s) | 339 |
| AcyI | GRCGYC | 1 cut(s) | 423 |
| AdeI | CACNNNGTG | 1 cut(s) | 175 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 323 |
| AflIII | ACRYGT | 1 cut(s) | 47 |
| AgsI | TTSAA | 5 cut(s) | 167, 297, 335, 344, 431 |
| AhlI | ACTAGT | 1 cut(s) | 401 |
| AjiI | CACGTC | 1 cut(s) | 50 |
| AluBI | AGCT | 2 cut(s) | 80, 278 |
| AluI | AGCT | 2 cut(s) | 80, 278 |
| AoxI | GGCC | 1 cut(s) | 53 |
| ApeKI | GCWGC | 1 cut(s) | 77 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 279, 339 |
| BbsI | GAAGAC | 2 cut(s) | 244, 342 |
| BbvI | GCAGC | 1 cut(s) | 89 |
| BccI | CCATC | 2 cut(s) | 65, 383 |
| BcuI | ACTAGT | 1 cut(s) | 401 |
| BfaI | CTAG | 1 cut(s) | 402 |
| BisI | GCNGC | 1 cut(s) | 78 |
| BlsI | GCNGC | 1 cut(s) | 79 |
| BmgBI | CACGTC | 1 cut(s) | 50 |
| BmiI | GGNNCC | 1 cut(s) | 315 |
| BmrI | ACTGGG | 1 cut(s) | 167 |
| BmuI | ACTGGG | 1 cut(s) | 167 |
| BpiI | GAAGAC | 2 cut(s) | 244, 342 |
| BsaHI | GRCGYC | 1 cut(s) | 423 |
| BsaJI | CCNNGG | 1 cut(s) | 183 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 315, 345 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 323 |
| Bse1I | ACTGG | 1 cut(s) | 173 |
| BseDI | CCNNGG | 1 cut(s) | 183 |
| BseGI | GGATG | 1 cut(s) | 130 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 323 |
| BseNI | ACTGG | 1 cut(s) | 173 |
| BseXI | GCAGC | 1 cut(s) | 89 |
| BshFI | GGCC | 1 cut(s) | 55 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 323 |
| BsnI | GGCC | 1 cut(s) | 55 |
| BspANI | GGCC | 1 cut(s) | 55 |
| BspLI | GGNNCC | 1 cut(s) | 315 |
| BspQI | GCTCTTC | 1 cut(s) | 363 |
| BsrI | ACTGG | 1 cut(s) | 173 |
| BssECI | CCNNGG | 1 cut(s) | 183 |
| BssNI | GRCGYC | 1 cut(s) | 423 |
| BssT1I | CCWWGG | 1 cut(s) | 183 |
| Bst4CI | ACNGT | 2 cut(s) | 14, 37 |
| Bst6I | CTCTTC | 1 cut(s) | 363 |
| BstACI | GRCGYC | 1 cut(s) | 423 |
| BstDEI | CTNAG | 4 cut(s) | 242, 412, 450, 465 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 321 |
| BstF5I | GGATG | 1 cut(s) | 130 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 422 |
| BstV1I | GCAGC | 1 cut(s) | 89 |
| BstV2I | GAAGAC | 2 cut(s) | 244, 342 |
| BsuRI | GGCC | 1 cut(s) | 55 |
| BtrI | CACGTC | 1 cut(s) | 50 |
| BtsCI | GGATG | 1 cut(s) | 130 |
| BtsIMutI | CAGTG | 2 cut(s) | 42, 180 |
| CseI | GACGC | 1 cut(s) | 431 |
| CviAII | CATG | 1 cut(s) | 352 |
| CviJI | RGCY | 7 cut(s) | 55, 80, 149, 191, 278, 314, 356 |
| CviKI_1 | RGCY | 7 cut(s) | 55, 80, 149, 191, 278, 314, 356 |
| DdeI | CTNAG | 4 cut(s) | 242, 412, 450, 465 |
| DraIII | CACNNNGTG | 1 cut(s) | 175 |
| Eam1104I | CTCTTC | 1 cut(s) | 363 |
| EarI | CTCTTC | 1 cut(s) | 363 |
| Eco130I | CCWWGG | 1 cut(s) | 183 |
| Eco57I | CTGAAG | 1 cut(s) | 339 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 321 |
| EcoT14I | CCWWGG | 1 cut(s) | 183 |
| ErhI | CCWWGG | 1 cut(s) | 183 |
| FaeI | CATG | 1 cut(s) | 355 |
| FaiI | YATR | 4 cut(s) | 119, 353, 384, 446 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 312, 344 |
| FatI | CATG | 1 cut(s) | 351 |
| Fnu4HI | GCNGC | 1 cut(s) | 78 |
| FokI | GGATG | 1 cut(s) | 137 |
| Fsp4HI | GCNGC | 1 cut(s) | 78 |
| FspBI | CTAG | 1 cut(s) | 402 |
| GluI | GCNGC | 1 cut(s) | 78 |
| HaeIII | GGCC | 1 cut(s) | 55 |
| HgaI | GACGC | 1 cut(s) | 431 |
| Hin1I | GRCGYC | 1 cut(s) | 423 |
| Hin1II | CATG | 1 cut(s) | 355 |
| HinfI | GANTC | 1 cut(s) | 260 |
| Hpy166II | GTNNAC | 2 cut(s) | 10, 407 |
| Hpy188I | TCNGA | 1 cut(s) | 265 |
| Hpy188III | TCNNGA | 1 cut(s) | 317 |
| Hpy8I | GTNNAC | 2 cut(s) | 10, 407 |
| Hpy99I | CGWCG | 1 cut(s) | 54 |
| HpyAV | CCTTC | 1 cut(s) | 314 |
| HpyCH4III | ACNGT | 2 cut(s) | 14, 37 |
| HpyCH4IV | ACGT | 1 cut(s) | 49 |
| HpyCH4V | TGCA | 2 cut(s) | 203, 440 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 422 |
| HpyF3I | CTNAG | 4 cut(s) | 242, 412, 450, 465 |
| HpySE526I | ACGT | 1 cut(s) | 49 |
| Hsp92I | GRCGYC | 1 cut(s) | 423 |
| Hsp92II | CATG | 1 cut(s) | 355 |
| LguI | GCTCTTC | 1 cut(s) | 363 |
| LmnI | GCTCC | 3 cut(s) | 41, 319, 394 |
| LpnPI | CCDG | 5 cut(s) | 69, 135, 186, 203, 330 |
| Lsp1109I | GCAGC | 1 cut(s) | 89 |
| MaeI | CTAG | 1 cut(s) | 402 |
| MaeII | ACGT | 1 cut(s) | 49 |
| MaeIII | GTNAC | 1 cut(s) | 347 |
| MboII | GAAGA | 3 cut(s) | 249, 347, 350 |
| MluCI | AATT | 6 cut(s) | 21, 64, 141, 194, 204, 292 |
| MlyI | GAGTC | 1 cut(s) | 269 |
| MnlI | CCTC | 2 cut(s) | 190, 317 |
| MroXI | GAANNNNTTC | 2 cut(s) | 279, 339 |
| MseI | TTAA | 4 cut(s) | 87, 140, 207, 291 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 422 |
| NlaIII | CATG | 1 cut(s) | 355 |
| NlaIV | GGNNCC | 1 cut(s) | 315 |
| PciSI | GCTCTTC | 1 cut(s) | 363 |
| PdmI | GAANNNNTTC | 2 cut(s) | 279, 339 |
| PkrI | GCNGC | 1 cut(s) | 79 |
| PleI | GAGTC | 1 cut(s) | 268 |
| PpsI | GAGTC | 1 cut(s) | 268 |
| PsiI | TTATAA | 1 cut(s) | 119 |
| PspN4I | GGNNCC | 1 cut(s) | 315 |
| SapI | GCTCTTC | 1 cut(s) | 363 |
| SaqAI | TTAA | 4 cut(s) | 87, 140, 207, 291 |
| SatI | GCNGC | 1 cut(s) | 78 |
| SchI | GAGTC | 1 cut(s) | 269 |
| SetI | ASST | 4 cut(s) | 52, 82, 213, 280 |
| SpeI | ACTAGT | 1 cut(s) | 401 |
| Sse9I | AATT | 6 cut(s) | 21, 64, 141, 194, 204, 292 |
| SspMI | CTAG | 1 cut(s) | 402 |
| StyI | CCWWGG | 1 cut(s) | 183 |
| TaaI | ACNGT | 2 cut(s) | 14, 37 |
| TaiI | ACGT | 1 cut(s) | 52 |
| TasI | AATT | 6 cut(s) | 21, 64, 141, 194, 204, 292 |
| Tru1I | TTAA | 4 cut(s) | 87, 140, 207, 291 |
| Tru9I | TTAA | 4 cut(s) | 87, 140, 207, 291 |
| TscAI | CASTG | 2 cut(s) | 42, 180 |
| TseI | GCWGC | 1 cut(s) | 77 |
| TspDTI | ATGAA | 1 cut(s) | 272 |
| TspRI | CASTG | 2 cut(s) | 42, 180 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 321 |
| XmnI | GAANNNNTTC | 2 cut(s) | 279, 339 |
| XspI | CTAG | 1 cut(s) | 402 |