ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 124 | 6.8e-24 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 32 |
| AclI | AACGTT | 1 cut(s) | 286 |
| AclWI | GGATC | 2 cut(s) | 17, 30 |
| AcsI | RAATTY | 1 cut(s) | 4 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 32, 107 |
| AgsI | TTSAA | 2 cut(s) | 200, 376 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 448 |
| AjnI | CCWGG | 1 cut(s) | 342 |
| AlwI | GGATC | 2 cut(s) | 17, 30 |
| AoxI | GGCC | 3 cut(s) | 87, 262, 410 |
| ApeKI | GCWGC | 1 cut(s) | 167 |
| ApoI | RAATTY | 1 cut(s) | 4 |
| AspS9I | GGNCC | 3 cut(s) | 64, 87, 410 |
| AsuHPI | GGTGA | 1 cut(s) | 215 |
| AvaII | GGWCC | 1 cut(s) | 64 |
| BamHI | GGATCC | 1 cut(s) | 22 |
| BbvI | GCAGC | 1 cut(s) | 154 |
| BccI | CCATC | 2 cut(s) | 5, 273 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 328, 362 |
| BciT130I | CCWGG | 1 cut(s) | 344 |
| BfaI | CTAG | 1 cut(s) | 272 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 418 |
| BisI | GCNGC | 1 cut(s) | 168 |
| BlsI | GCNGC | 1 cut(s) | 169 |
| Bme1390I | CCNGG | 1 cut(s) | 344 |
| Bme18I | GGWCC | 1 cut(s) | 64 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 448 |
| BmgT120I | GGNCC | 3 cut(s) | 64, 87, 410 |
| BmiI | GGNNCC | 3 cut(s) | 24, 65, 88 |
| BmrFI | CCNGG | 1 cut(s) | 344 |
| BmsI | GCATC | 1 cut(s) | 196 |
| BsaJI | CCNNGG | 2 cut(s) | 90, 416 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 32, 107 |
| Bse1I | ACTGG | 1 cut(s) | 195 |
| Bse3DI | GCAATG | 1 cut(s) | 143 |
| BseBI | CCWGG | 1 cut(s) | 344 |
| BseDI | CCNNGG | 2 cut(s) | 90, 416 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 32, 107 |
| BseMI | GCAATG | 1 cut(s) | 143 |
| BseNI | ACTGG | 1 cut(s) | 195 |
| BseXI | GCAGC | 1 cut(s) | 154 |
| BshFI | GGCC | 3 cut(s) | 89, 264, 412 |
| BslFI | GGGAC | 2 cut(s) | 77, 83 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 32, 107 |
| BsmFI | GGGAC | 2 cut(s) | 77, 83 |
| BsnI | GGCC | 3 cut(s) | 89, 264, 412 |
| Bsp143I | GATC | 2 cut(s) | 22, 125 |
| Bsp19I | CCATGG | 1 cut(s) | 90 |
| BspANI | GGCC | 3 cut(s) | 89, 264, 412 |
| BspLI | GGNNCC | 3 cut(s) | 24, 65, 88 |
| BspPI | GGATC | 2 cut(s) | 17, 30 |
| BsrDI | GCAATG | 1 cut(s) | 143 |
| BsrI | ACTGG | 1 cut(s) | 195 |
| BssECI | CCNNGG | 2 cut(s) | 90, 416 |
| BssMI | GATC | 2 cut(s) | 22, 125 |
| BssT1I | CCWWGG | 2 cut(s) | 90, 416 |
| Bst2UI | CCWGG | 1 cut(s) | 344 |
| Bst4CI | ACNGT | 2 cut(s) | 356, 390 |
| BstDSI | CCRYGG | 1 cut(s) | 90 |
| BstKTI | GATC | 2 cut(s) | 25, 128 |
| BstMBI | GATC | 2 cut(s) | 22, 125 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 368, 418 |
| BstNI | CCWGG | 1 cut(s) | 344 |
| BstSCI | CCNGG | 1 cut(s) | 342 |
| BstV1I | GCAGC | 1 cut(s) | 154 |
| BstX2I | RGATCY | 1 cut(s) | 22 |
| BstYI | RGATCY | 1 cut(s) | 22 |
| BsuRI | GGCC | 3 cut(s) | 89, 264, 412 |
| BtgI | CCRYGG | 1 cut(s) | 90 |
| BtsIMutI | CAGTG | 1 cut(s) | 434 |
| Cfr13I | GGNCC | 3 cut(s) | 64, 87, 410 |
| CsiI | ACCWGGT | 1 cut(s) | 342 |
| CviAII | CATG | 3 cut(s) | 91, 152, 173 |
| CviJI | RGCY | 7 cut(s) | 89, 137, 264, 318, 371, 412, 421 |
| CviKI_1 | RGCY | 7 cut(s) | 89, 137, 264, 318, 371, 412, 421 |
| DpnI | GATC | 2 cut(s) | 24, 127 |
| DpnII | GATC | 2 cut(s) | 22, 125 |
| DraI | TTTAAA | 1 cut(s) | 81 |
| DriI | GACNNNNNGTC | 1 cut(s) | 448 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 448 |
| Eco130I | CCWWGG | 2 cut(s) | 90, 416 |
| Eco47I | GGWCC | 1 cut(s) | 64 |
| EcoRII | CCWGG | 1 cut(s) | 342 |
| EcoT14I | CCWWGG | 2 cut(s) | 90, 416 |
| ErhI | CCWWGG | 2 cut(s) | 90, 416 |
| FaeI | CATG | 3 cut(s) | 94, 155, 176 |
| FaiI | YATR | 4 cut(s) | 92, 153, 174, 440 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 252, 284 |
| FaqI | GGGAC | 2 cut(s) | 77, 83 |
| FatI | CATG | 3 cut(s) | 90, 151, 172 |
| Fnu4HI | GCNGC | 1 cut(s) | 168 |
| Fsp4HI | GCNGC | 1 cut(s) | 168 |
| FspBI | CTAG | 1 cut(s) | 272 |
| GluI | GCNGC | 1 cut(s) | 168 |
| HaeIII | GGCC | 3 cut(s) | 89, 264, 412 |
| Hin1II | CATG | 3 cut(s) | 94, 155, 176 |
| HincII | GTYRAC | 1 cut(s) | 386 |
| HindII | GTYRAC | 1 cut(s) | 386 |
| HinfI | GANTC | 2 cut(s) | 296, 404 |
| HphI | GGTGA | 1 cut(s) | 215 |
| Hpy166II | GTNNAC | 1 cut(s) | 386 |
| Hpy188I | TCNGA | 1 cut(s) | 454 |
| Hpy188III | TCNNGA | 2 cut(s) | 257, 272 |
| Hpy8I | GTNNAC | 1 cut(s) | 386 |
| HpyAV | CCTTC | 3 cut(s) | 194, 254, 329 |
| HpyCH4III | ACNGT | 2 cut(s) | 356, 390 |
| HpyCH4IV | ACGT | 1 cut(s) | 286 |
| HpyCH4V | TGCA | 1 cut(s) | 143 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 368, 418 |
| HpySE526I | ACGT | 1 cut(s) | 286 |
| Hsp92II | CATG | 3 cut(s) | 94, 155, 176 |
| Kzo9I | GATC | 2 cut(s) | 22, 125 |
| LpnPI | CCDG | 6 cut(s) | 116, 176, 242, 329, 356, 393 |
| Lsp1109I | GCAGC | 1 cut(s) | 154 |
| LweI | GCATC | 1 cut(s) | 196 |
| MabI | ACCWGGT | 1 cut(s) | 342 |
| MaeI | CTAG | 1 cut(s) | 272 |
| MaeII | ACGT | 1 cut(s) | 286 |
| MalI | GATC | 2 cut(s) | 24, 127 |
| MboI | GATC | 2 cut(s) | 22, 125 |
| MboII | GAAGA | 1 cut(s) | 260 |
| MflI | RGATCY | 1 cut(s) | 22 |
| MluCI | AATT | 2 cut(s) | 4, 195 |
| MlyI | GAGTC | 1 cut(s) | 305 |
| MnlI | CCTC | 4 cut(s) | 127, 268, 361, 423 |
| MseI | TTAA | 4 cut(s) | 80, 251, 282, 327 |
| MspR9I | CCNGG | 1 cut(s) | 344 |
| MvaI | CCWGG | 1 cut(s) | 344 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 368, 418 |
| NcoI | CCATGG | 1 cut(s) | 90 |
| NdeII | GATC | 2 cut(s) | 22, 125 |
| NlaIII | CATG | 3 cut(s) | 94, 155, 176 |
| NlaIV | GGNNCC | 3 cut(s) | 24, 65, 88 |
| PfeI | GAWTC | 1 cut(s) | 404 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 32 |
| PkrI | GCNGC | 1 cut(s) | 169 |
| PleI | GAGTC | 1 cut(s) | 304 |
| PpsI | GAGTC | 1 cut(s) | 304 |
| Psp1406I | AACGTT | 1 cut(s) | 286 |
| Psp6I | CCWGG | 1 cut(s) | 342 |
| PspGI | CCWGG | 1 cut(s) | 342 |
| PspN4I | GGNNCC | 3 cut(s) | 24, 65, 88 |
| PspPI | GGNCC | 3 cut(s) | 64, 87, 410 |
| PsuI | RGATCY | 1 cut(s) | 22 |
| SaqAI | TTAA | 4 cut(s) | 80, 251, 282, 327 |
| SatI | GCNGC | 1 cut(s) | 168 |
| Sau3AI | GATC | 2 cut(s) | 22, 125 |
| Sau96I | GGNCC | 3 cut(s) | 64, 87, 410 |
| SchI | GAGTC | 1 cut(s) | 305 |
| ScrFI | CCNGG | 1 cut(s) | 344 |
| SetI | ASST | 3 cut(s) | 205, 289, 348 |
| SexAI | ACCWGGT | 1 cut(s) | 342 |
| SfaNI | GCATC | 1 cut(s) | 196 |
| SinI | GGWCC | 1 cut(s) | 64 |
| Sse9I | AATT | 2 cut(s) | 4, 195 |
| SspMI | CTAG | 1 cut(s) | 272 |
| StyD4I | CCNGG | 1 cut(s) | 342 |
| StyI | CCWWGG | 2 cut(s) | 90, 416 |
| TaaI | ACNGT | 2 cut(s) | 356, 390 |
| TaiI | ACGT | 1 cut(s) | 289 |
| TaqI | TCGA | 2 cut(s) | 9, 160 |
| TasI | AATT | 2 cut(s) | 4, 195 |
| TfiI | GAWTC | 1 cut(s) | 404 |
| Tru1I | TTAA | 4 cut(s) | 80, 251, 282, 327 |
| Tru9I | TTAA | 4 cut(s) | 80, 251, 282, 327 |
| TscAI | CASTG | 1 cut(s) | 434 |
| TseI | GCWGC | 1 cut(s) | 167 |
| TspDTI | ATGAA | 2 cut(s) | 17, 140 |
| TspRI | CASTG | 1 cut(s) | 434 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 32 |
| VpaK11BI | GGWCC | 1 cut(s) | 64 |
| XapI | RAATTY | 1 cut(s) | 4 |
| XbaI | TCTAGA | 1 cut(s) | 271 |
| XspI | CTAG | 1 cut(s) | 272 |