ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 88 - 155 | 9.6e-11 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 218 |
| Acc36I | ACCTGC | 1 cut(s) | 218 |
| AclWI | GGATC | 1 cut(s) | 247 |
| AcsI | RAATTY | 3 cut(s) | 147, 274, 422 |
| AfaI | GTAC | 1 cut(s) | 265 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 392 |
| AgsI | TTSAA | 4 cut(s) | 168, 246, 416, 516 |
| AhlI | ACTAGT | 1 cut(s) | 538 |
| AjnI | CCWGG | 1 cut(s) | 496 |
| Alw26I | GTCTC | 1 cut(s) | 28 |
| AlwI | GGATC | 1 cut(s) | 247 |
| ApoI | RAATTY | 3 cut(s) | 147, 274, 422 |
| AsuHPI | GGTGA | 1 cut(s) | 242 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 39 |
| BbsI | GAAGAC | 1 cut(s) | 320 |
| BccI | CCATC | 2 cut(s) | 16, 38 |
| BciT130I | CCWGG | 1 cut(s) | 498 |
| BcoDI | GTCTC | 1 cut(s) | 28 |
| BcuI | ACTAGT | 1 cut(s) | 538 |
| BfaI | CTAG | 2 cut(s) | 366, 539 |
| BfuAI | ACCTGC | 1 cut(s) | 218 |
| Bme1390I | CCNGG | 1 cut(s) | 498 |
| BmiI | GGNNCC | 1 cut(s) | 495 |
| BmrFI | CCNGG | 1 cut(s) | 498 |
| BpiI | GAAGAC | 1 cut(s) | 320 |
| BsaBI | GATNNNNATC | 1 cut(s) | 415 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 392 |
| Bse8I | GATNNNNATC | 1 cut(s) | 415 |
| BseBI | CCWGG | 1 cut(s) | 498 |
| BseGI | GGATG | 2 cut(s) | 49, 160 |
| BseJI | GATNNNNATC | 1 cut(s) | 415 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 392 |
| BseMII | CTCAG | 1 cut(s) | 53 |
| BseRI | GAGGAG | 1 cut(s) | 16 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 392 |
| BsmAI | GTCTC | 1 cut(s) | 28 |
| Bsp143I | GATC | 2 cut(s) | 239, 303 |
| BspCNI | CTCAG | 1 cut(s) | 52 |
| BspLI | GGNNCC | 1 cut(s) | 495 |
| BspMI | ACCTGC | 1 cut(s) | 218 |
| BspPI | GGATC | 1 cut(s) | 247 |
| BssMI | GATC | 2 cut(s) | 239, 303 |
| Bst2UI | CCWGG | 1 cut(s) | 498 |
| Bst6I | CTCTTC | 1 cut(s) | 385 |
| BstDEI | CTNAG | 2 cut(s) | 39, 344 |
| BstF5I | GGATG | 2 cut(s) | 49, 160 |
| BstKTI | GATC | 2 cut(s) | 242, 306 |
| BstMAI | GTCTC | 1 cut(s) | 28 |
| BstMBI | GATC | 2 cut(s) | 239, 303 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 151 |
| BstNI | CCWGG | 1 cut(s) | 498 |
| BstSCI | CCNGG | 1 cut(s) | 496 |
| BstV2I | GAAGAC | 1 cut(s) | 320 |
| BstX2I | RGATCY | 1 cut(s) | 239 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 239 |
| BtgZI | GCGATG | 1 cut(s) | 337 |
| BtsCI | GGATG | 2 cut(s) | 49, 160 |
| BveI | ACCTGC | 1 cut(s) | 218 |
| Csp6I | GTAC | 1 cut(s) | 264 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 234, 269 |
| CviAII | CATG | 3 cut(s) | 332, 388, 428 |
| CviJI | RGCY | 3 cut(s) | 209, 290, 509 |
| CviKI_1 | RGCY | 3 cut(s) | 209, 290, 509 |
| CviQI | GTAC | 1 cut(s) | 264 |
| DdeI | CTNAG | 2 cut(s) | 39, 344 |
| DpnI | GATC | 2 cut(s) | 241, 305 |
| DpnII | GATC | 2 cut(s) | 239, 303 |
| Eam1104I | CTCTTC | 1 cut(s) | 385 |
| EarI | CTCTTC | 1 cut(s) | 385 |
| EcoRII | CCWGG | 1 cut(s) | 496 |
| FaeI | CATG | 3 cut(s) | 335, 391, 431 |
| FatI | CATG | 3 cut(s) | 331, 387, 427 |
| FokI | GGATG | 2 cut(s) | 56, 147 |
| FspBI | CTAG | 2 cut(s) | 366, 539 |
| Hin1II | CATG | 3 cut(s) | 335, 391, 431 |
| HinfI | GANTC | 1 cut(s) | 416 |
| HphI | GGTGA | 1 cut(s) | 242 |
| Hpy166II | GTNNAC | 1 cut(s) | 395 |
| Hpy188I | TCNGA | 2 cut(s) | 13, 297 |
| Hpy188III | TCNNGA | 3 cut(s) | 41, 215, 366 |
| Hpy8I | GTNNAC | 1 cut(s) | 395 |
| HpyAV | CCTTC | 2 cut(s) | 174, 230 |
| HpyCH4IV | ACGT | 1 cut(s) | 397 |
| HpyCH4V | TGCA | 3 cut(s) | 62, 203, 335 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 151 |
| HpyF3I | CTNAG | 2 cut(s) | 39, 344 |
| HpySE526I | ACGT | 1 cut(s) | 397 |
| Hsp92II | CATG | 3 cut(s) | 335, 391, 431 |
| Kzo9I | GATC | 2 cut(s) | 239, 303 |
| LpnPI | CCDG | 7 cut(s) | 26, 139, 191, 200, 213, 483, 510 |
| MaeI | CTAG | 2 cut(s) | 366, 539 |
| MaeII | ACGT | 1 cut(s) | 397 |
| MaeIII | GTNAC | 1 cut(s) | 353 |
| MalI | GATC | 2 cut(s) | 241, 305 |
| MboI | GATC | 2 cut(s) | 239, 303 |
| MboII | GAAGA | 7 cut(s) | 149, 234, 283, 320, 332, 372, 542 |
| MfeI | CAATTG | 1 cut(s) | 73 |
| MflI | RGATCY | 1 cut(s) | 239 |
| MluCI | AATT | 8 cut(s) | 33, 73, 85, 147, 274, 308, 336, 422 |
| MnlI | CCTC | 3 cut(s) | 37, 85, 499 |
| MseI | TTAA | 1 cut(s) | 183 |
| MspR9I | CCNGG | 1 cut(s) | 498 |
| MunI | CAATTG | 1 cut(s) | 73 |
| MvaI | CCWGG | 1 cut(s) | 498 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 151 |
| NdeII | GATC | 2 cut(s) | 239, 303 |
| NlaIII | CATG | 3 cut(s) | 335, 391, 431 |
| NlaIV | GGNNCC | 1 cut(s) | 495 |
| PaqCI | CACCTGC | 1 cut(s) | 218 |
| PfeI | GAWTC | 1 cut(s) | 416 |
| PfoI | TCCNGGA | 1 cut(s) | 496 |
| Psp6I | CCWGG | 1 cut(s) | 496 |
| PspGI | CCWGG | 1 cut(s) | 496 |
| PspN4I | GGNNCC | 1 cut(s) | 495 |
| PsuI | RGATCY | 1 cut(s) | 239 |
| RsaI | GTAC | 1 cut(s) | 265 |
| RsaNI | GTAC | 1 cut(s) | 264 |
| SaqAI | TTAA | 1 cut(s) | 183 |
| Sau3AI | GATC | 2 cut(s) | 239, 303 |
| ScrFI | CCNGG | 1 cut(s) | 498 |
| SetI | ASST | 4 cut(s) | 96, 124, 232, 400 |
| SpeI | ACTAGT | 1 cut(s) | 538 |
| Sse9I | AATT | 8 cut(s) | 33, 73, 85, 147, 274, 308, 336, 422 |
| SspI | AATATT | 2 cut(s) | 58, 176 |
| SspMI | CTAG | 2 cut(s) | 366, 539 |
| StyD4I | CCNGG | 1 cut(s) | 496 |
| TaiI | ACGT | 1 cut(s) | 400 |
| TasI | AATT | 8 cut(s) | 33, 73, 85, 147, 274, 308, 336, 422 |
| TatI | WGTACW | 1 cut(s) | 263 |
| TfiI | GAWTC | 1 cut(s) | 416 |
| Tru1I | TTAA | 1 cut(s) | 183 |
| Tru9I | TTAA | 1 cut(s) | 183 |
| TspDTI | ATGAA | 3 cut(s) | 149, 249, 320 |
| XapI | RAATTY | 3 cut(s) | 147, 274, 422 |
| XbaI | TCTAGA | 1 cut(s) | 365 |
| XspI | CTAG | 2 cut(s) | 366, 539 |