DEAD-box ATP-dependent RNA helicase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 2 cut(s) | 41, 244 |
| AfaI | GTAC | 1 cut(s) | 143 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 157, 281, 282 |
| AgsI | TTSAA | 3 cut(s) | 26, 73, 248 |
| AjnI | CCWGG | 1 cut(s) | 82 |
| AluBI | AGCT | 3 cut(s) | 22, 103, 125 |
| AluI | AGCT | 3 cut(s) | 22, 103, 125 |
| Alw21I | GWGCWC | 1 cut(s) | 105 |
| AoxI | GGCC | 2 cut(s) | 202, 357 |
| AspLEI | GCGC | 1 cut(s) | 266 |
| AspS9I | GGNCC | 1 cut(s) | 86 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| AvaII | GGWCC | 1 cut(s) | 86 |
| BanII | GRGCYC | 2 cut(s) | 105, 135 |
| Bbv12I | GWGCWC | 1 cut(s) | 105 |
| BciT130I | CCWGG | 1 cut(s) | 84 |
| BfaI | CTAG | 2 cut(s) | 192, 240 |
| BfmI | CTRYAG | 1 cut(s) | 327 |
| BglII | AGATCT | 2 cut(s) | 188, 331 |
| Bme1390I | CCNGG | 1 cut(s) | 84 |
| Bme18I | GGWCC | 1 cut(s) | 86 |
| BmgT120I | GGNCC | 1 cut(s) | 86 |
| BmiI | GGNNCC | 1 cut(s) | 305 |
| BmrFI | CCNGG | 1 cut(s) | 84 |
| BmsI | GCATC | 1 cut(s) | 31 |
| Bpu10I | CCTNAGC | 1 cut(s) | 104 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 157, 281, 282 |
| Bse3DI | GCAATG | 1 cut(s) | 162 |
| BseBI | CCWGG | 1 cut(s) | 84 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 157, 281, 282 |
| BseMI | GCAATG | 1 cut(s) | 162 |
| BseMII | CTCAG | 1 cut(s) | 118 |
| BshFI | GGCC | 2 cut(s) | 204, 359 |
| BsiHKAI | GWGCWC | 1 cut(s) | 105 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 157, 281, 282 |
| BsnI | GGCC | 2 cut(s) | 204, 359 |
| Bsp1286I | GDGCHC | 2 cut(s) | 105, 135 |
| Bsp143I | GATC | 2 cut(s) | 188, 331 |
| BspANI | GGCC | 2 cut(s) | 204, 359 |
| BspCNI | CTCAG | 1 cut(s) | 117 |
| BspLI | GGNNCC | 1 cut(s) | 305 |
| BsrDI | GCAATG | 1 cut(s) | 162 |
| BssMI | GATC | 2 cut(s) | 188, 331 |
| Bst2UI | CCWGG | 1 cut(s) | 84 |
| Bst4CI | ACNGT | 1 cut(s) | 141 |
| Bst6I | CTCTTC | 2 cut(s) | 2, 263 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 161 |
| BstC8I | GCNNGC | 2 cut(s) | 123, 361 |
| BstDEI | CTNAG | 1 cut(s) | 104 |
| BstHHI | GCGC | 1 cut(s) | 266 |
| BstKTI | GATC | 2 cut(s) | 191, 334 |
| BstMBI | GATC | 2 cut(s) | 188, 331 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 161, 201 |
| BstNI | CCWGG | 1 cut(s) | 84 |
| BstSCI | CCNGG | 1 cut(s) | 82 |
| BstSFI | CTRYAG | 1 cut(s) | 327 |
| BstX2I | RGATCY | 2 cut(s) | 188, 331 |
| BstYI | RGATCY | 2 cut(s) | 188, 331 |
| BsuRI | GGCC | 2 cut(s) | 204, 359 |
| Cac8I | GCNNGC | 2 cut(s) | 123, 361 |
| CfoI | GCGC | 1 cut(s) | 266 |
| Cfr13I | GGNCC | 1 cut(s) | 86 |
| Csp6I | GTAC | 1 cut(s) | 142 |
| CviJI | RGCY | 6 cut(s) | 22, 103, 125, 133, 204, 359 |
| CviKI_1 | RGCY | 6 cut(s) | 22, 103, 125, 133, 204, 359 |
| CviQI | GTAC | 1 cut(s) | 142 |
| DdeI | CTNAG | 1 cut(s) | 104 |
| DpnI | GATC | 2 cut(s) | 190, 333 |
| DpnII | GATC | 2 cut(s) | 188, 331 |
| Eam1104I | CTCTTC | 2 cut(s) | 2, 263 |
| EarI | CTCTTC | 2 cut(s) | 2, 263 |
| Ecl136II | GAGCTC | 1 cut(s) | 103 |
| Eco24I | GRGCYC | 2 cut(s) | 105, 135 |
| Eco47I | GGWCC | 1 cut(s) | 86 |
| Eco53kI | GAGCTC | 1 cut(s) | 103 |
| Eco57I | CTGAAG | 2 cut(s) | 41, 244 |
| EcoICRI | GAGCTC | 1 cut(s) | 103 |
| EcoRII | CCWGG | 1 cut(s) | 82 |
| EcoT38I | GRGCYC | 2 cut(s) | 105, 135 |
| FaiI | YATR | 3 cut(s) | 14, 210, 218 |
| FriOI | GRGCYC | 2 cut(s) | 105, 135 |
| FspBI | CTAG | 2 cut(s) | 192, 240 |
| GlaI | GCGC | 1 cut(s) | 265 |
| HaeIII | GGCC | 2 cut(s) | 204, 359 |
| HhaI | GCGC | 1 cut(s) | 266 |
| Hin6I | GCGC | 1 cut(s) | 264 |
| HinP1I | GCGC | 1 cut(s) | 264 |
| HindIII | AAGCTT | 1 cut(s) | 20 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy188I | TCNGA | 3 cut(s) | 37, 60, 316 |
| Hpy188III | TCNNGA | 2 cut(s) | 73, 297 |
| HpyAV | CCTTC | 3 cut(s) | 91, 294, 349 |
| HpyCH4III | ACNGT | 1 cut(s) | 141 |
| HpyCH4V | TGCA | 2 cut(s) | 113, 155 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 161, 201 |
| HpyF3I | CTNAG | 1 cut(s) | 104 |
| HspAI | GCGC | 1 cut(s) | 264 |
| Kzo9I | GATC | 2 cut(s) | 188, 331 |
| LmnI | GCTCC | 1 cut(s) | 100 |
| LpnPI | CCDG | 6 cut(s) | 69, 91, 96, 165, 310, 320 |
| LweI | GCATC | 1 cut(s) | 31 |
| MaeI | CTAG | 2 cut(s) | 192, 240 |
| MaeIII | GTNAC | 1 cut(s) | 235 |
| MalI | GATC | 2 cut(s) | 190, 333 |
| MboI | GATC | 2 cut(s) | 188, 331 |
| MboII | GAAGA | 2 cut(s) | 19, 250 |
| MflI | RGATCY | 2 cut(s) | 188, 331 |
| MhlI | GDGCHC | 2 cut(s) | 105, 135 |
| MluCI | AATT | 4 cut(s) | 26, 90, 145, 176 |
| MnlI | CCTC | 2 cut(s) | 24, 286 |
| MseI | TTAA | 2 cut(s) | 93, 309 |
| MspR9I | CCNGG | 1 cut(s) | 84 |
| MvaI | CCWGG | 1 cut(s) | 84 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 161, 201 |
| NdeII | GATC | 2 cut(s) | 188, 331 |
| NlaIV | GGNNCC | 1 cut(s) | 305 |
| Psp124BI | GAGCTC | 1 cut(s) | 105 |
| Psp6I | CCWGG | 1 cut(s) | 82 |
| PspGI | CCWGG | 1 cut(s) | 82 |
| PspN4I | GGNNCC | 1 cut(s) | 305 |
| PspPI | GGNCC | 1 cut(s) | 86 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 228, 260 |
| PsuI | RGATCY | 2 cut(s) | 188, 331 |
| RsaI | GTAC | 1 cut(s) | 143 |
| RsaNI | GTAC | 1 cut(s) | 142 |
| SacI | GAGCTC | 1 cut(s) | 105 |
| SaqAI | TTAA | 2 cut(s) | 93, 309 |
| Sau3AI | GATC | 2 cut(s) | 188, 331 |
| Sau96I | GGNCC | 1 cut(s) | 86 |
| ScrFI | CCNGG | 1 cut(s) | 84 |
| SduI | GDGCHC | 2 cut(s) | 105, 135 |
| SetI | ASST | 7 cut(s) | 24, 35, 105, 127, 228, 272, 305 |
| SfaNI | GCATC | 1 cut(s) | 31 |
| SfcI | CTRYAG | 1 cut(s) | 327 |
| SinI | GGWCC | 1 cut(s) | 86 |
| Sse9I | AATT | 4 cut(s) | 26, 90, 145, 176 |
| SspI | AATATT | 1 cut(s) | 292 |
| SspMI | CTAG | 2 cut(s) | 192, 240 |
| SstI | GAGCTC | 1 cut(s) | 105 |
| StyD4I | CCNGG | 1 cut(s) | 82 |
| TaaI | ACNGT | 1 cut(s) | 141 |
| TasI | AATT | 4 cut(s) | 26, 90, 145, 176 |
| TatI | WGTACW | 1 cut(s) | 141 |
| Tru1I | TTAA | 2 cut(s) | 93, 309 |
| Tru9I | TTAA | 2 cut(s) | 93, 309 |
| TspDTI | ATGAA | 2 cut(s) | 360, 368 |
| VpaK11BI | GGWCC | 1 cut(s) | 86 |
| XspI | CTAG | 2 cut(s) | 192, 240 |