ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 45 - 167 | 1.7e-29 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 226 |
| AciI | CCGC | 2 cut(s) | 96, 224 |
| AclWI | GGATC | 1 cut(s) | 201 |
| AcoI | YGGCCR | 1 cut(s) | 93 |
| AcsI | RAATTY | 1 cut(s) | 241 |
| AcuI | CTGAAG | 1 cut(s) | 408 |
| AfaI | GTAC | 1 cut(s) | 355 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 236 |
| AflIII | ACRYGT | 1 cut(s) | 301 |
| AgsI | TTSAA | 1 cut(s) | 127 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 74, 106, 308, 340 |
| AluBI | AGCT | 5 cut(s) | 77, 146, 218, 257, 266 |
| AluI | AGCT | 5 cut(s) | 77, 146, 218, 257, 266 |
| Alw26I | GTCTC | 2 cut(s) | 252, 359 |
| AlwI | GGATC | 1 cut(s) | 201 |
| AoxI | GGCC | 3 cut(s) | 93, 391, 539 |
| ApeKI | GCWGC | 1 cut(s) | 59 |
| ApoI | RAATTY | 1 cut(s) | 241 |
| AspLEI | GCGC | 1 cut(s) | 182 |
| AspS9I | GGNCC | 1 cut(s) | 539 |
| AsuC2I | CCSGG | 1 cut(s) | 116 |
| AsuHPI | GGTGA | 1 cut(s) | 344 |
| BaeGI | GKGCMC | 1 cut(s) | 231 |
| BanI | GGYRCC | 1 cut(s) | 226 |
| BbvI | GCAGC | 1 cut(s) | 71 |
| BcnI | CCSGG | 1 cut(s) | 116 |
| BcoDI | GTCTC | 2 cut(s) | 252, 359 |
| BfoI | RGCGCY | 1 cut(s) | 183 |
| BisI | GCNGC | 2 cut(s) | 60, 96 |
| BlsI | GCNGC | 2 cut(s) | 61, 97 |
| Bme1390I | CCNGG | 1 cut(s) | 116 |
| BmgT120I | GGNCC | 1 cut(s) | 539 |
| BmiI | GGNNCC | 2 cut(s) | 228, 540 |
| BmrFI | CCNGG | 1 cut(s) | 116 |
| BmsI | GCATC | 2 cut(s) | 174, 325 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 502, 534 |
| BpuMI | CCSGG | 1 cut(s) | 116 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 236 |
| Bse1I | ACTGG | 2 cut(s) | 324, 434 |
| Bse3DI | GCAATG | 2 cut(s) | 55, 356 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 236 |
| BseMI | GCAATG | 2 cut(s) | 55, 356 |
| BseMII | CTCAG | 3 cut(s) | 301, 341, 371 |
| BseNI | ACTGG | 2 cut(s) | 324, 434 |
| BseSI | GKGCMC | 1 cut(s) | 231 |
| BseXI | GCAGC | 1 cut(s) | 71 |
| BshFI | GGCC | 3 cut(s) | 95, 393, 541 |
| BshNI | GGYRCC | 1 cut(s) | 226 |
| BsiSI | CCGG | 1 cut(s) | 116 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 236 |
| BsmAI | GTCTC | 2 cut(s) | 252, 359 |
| BsnI | GGCC | 3 cut(s) | 95, 393, 541 |
| Bsp1286I | GDGCHC | 1 cut(s) | 231 |
| Bsp143I | GATC | 2 cut(s) | 193, 481 |
| BspACI | CCGC | 2 cut(s) | 96, 224 |
| BspANI | GGCC | 3 cut(s) | 95, 393, 541 |
| BspCNI | CTCAG | 3 cut(s) | 300, 342, 372 |
| BspLI | GGNNCC | 2 cut(s) | 228, 540 |
| BspPI | GGATC | 1 cut(s) | 201 |
| BspT107I | GGYRCC | 1 cut(s) | 226 |
| BsrDI | GCAATG | 2 cut(s) | 55, 356 |
| BsrI | ACTGG | 2 cut(s) | 324, 434 |
| BssMI | GATC | 2 cut(s) | 193, 481 |
| Bst4CI | ACNGT | 3 cut(s) | 122, 346, 417 |
| BstDEI | CTNAG | 4 cut(s) | 78, 287, 350, 380 |
| BstH2I | RGCGCY | 1 cut(s) | 183 |
| BstHHI | GCGC | 1 cut(s) | 182 |
| BstKTI | GATC | 2 cut(s) | 196, 484 |
| BstMAI | GTCTC | 2 cut(s) | 252, 359 |
| BstMBI | GATC | 2 cut(s) | 193, 481 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 68, 263, 497 |
| BstNSI | RCATGY | 1 cut(s) | 305 |
| BstSCI | CCNGG | 1 cut(s) | 114 |
| BstSLI | GKGCMC | 1 cut(s) | 231 |
| BstV1I | GCAGC | 1 cut(s) | 71 |
| BsuRI | GGCC | 3 cut(s) | 95, 393, 541 |
| BtsI | GCAGTG | 1 cut(s) | 11 |
| BtsIMutI | CAGTG | 3 cut(s) | 11, 175, 351 |
| CfoI | GCGC | 1 cut(s) | 182 |
| Cfr13I | GGNCC | 1 cut(s) | 539 |
| Csp6I | GTAC | 1 cut(s) | 354 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 240, 275 |
| CviAII | CATG | 4 cut(s) | 99, 281, 302, 362 |
| CviJI | RGCY | 9 cut(s) | 77, 95, 146, 218, 257, 266, 393, 500, 541 |
| CviKI_1 | RGCY | 9 cut(s) | 77, 95, 146, 218, 257, 266, 393, 500, 541 |
| CviQI | GTAC | 1 cut(s) | 354 |
| DdeI | CTNAG | 4 cut(s) | 78, 287, 350, 380 |
| DpnI | GATC | 2 cut(s) | 195, 483 |
| DpnII | GATC | 2 cut(s) | 193, 481 |
| EaeI | YGGCCR | 1 cut(s) | 93 |
| Eco57I | CTGAAG | 1 cut(s) | 408 |
| FaeI | CATG | 4 cut(s) | 102, 284, 305, 365 |
| FaiI | YATR | 5 cut(s) | 100, 282, 303, 363, 396 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 485, 517 |
| FatI | CATG | 4 cut(s) | 98, 280, 301, 361 |
| Fnu4HI | GCNGC | 2 cut(s) | 60, 96 |
| Fsp4HI | GCNGC | 2 cut(s) | 60, 96 |
| GlaI | GCGC | 1 cut(s) | 181 |
| GluI | GCNGC | 2 cut(s) | 60, 96 |
| HaeII | RGCGCY | 1 cut(s) | 183 |
| HaeIII | GGCC | 3 cut(s) | 95, 393, 541 |
| HapII | CCGG | 1 cut(s) | 116 |
| HhaI | GCGC | 1 cut(s) | 182 |
| Hin1II | CATG | 4 cut(s) | 102, 284, 305, 365 |
| Hin6I | GCGC | 1 cut(s) | 180 |
| HinP1I | GCGC | 1 cut(s) | 180 |
| HindIII | AAGCTT | 1 cut(s) | 264 |
| HinfI | GANTC | 3 cut(s) | 11, 285, 511 |
| HpaII | CCGG | 1 cut(s) | 116 |
| HphI | GGTGA | 1 cut(s) | 344 |
| Hpy166II | GTNNAC | 1 cut(s) | 312 |
| Hpy188I | TCNGA | 3 cut(s) | 239, 290, 388 |
| Hpy188III | TCNNGA | 2 cut(s) | 313, 401 |
| Hpy8I | GTNNAC | 1 cut(s) | 312 |
| HpyAV | CCTTC | 4 cut(s) | 22, 47, 323, 383 |
| HpyCH4III | ACNGT | 3 cut(s) | 122, 346, 417 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 361, 468, 479, 491 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 68, 263, 497 |
| HpyF3I | CTNAG | 4 cut(s) | 78, 287, 350, 380 |
| Hsp92II | CATG | 4 cut(s) | 102, 284, 305, 365 |
| HspAI | GCGC | 1 cut(s) | 180 |
| Kzo9I | GATC | 2 cut(s) | 193, 481 |
| LmnI | GCTCC | 3 cut(s) | 56, 143, 215 |
| LpnPI | CCDG | 5 cut(s) | 129, 305, 353, 392, 447 |
| Lsp1109I | GCAGC | 1 cut(s) | 71 |
| LweI | GCATC | 2 cut(s) | 174, 325 |
| MaeIII | GTNAC | 1 cut(s) | 297 |
| MalI | GATC | 2 cut(s) | 195, 483 |
| MboI | GATC | 2 cut(s) | 193, 481 |
| MhlI | GDGCHC | 1 cut(s) | 231 |
| MluCI | AATT | 5 cut(s) | 89, 241, 323, 420, 543 |
| MlyI | GAGTC | 3 cut(s) | 20, 279, 520 |
| MmeI | TCCRAC | 1 cut(s) | 217 |
| MnlI | CCTC | 2 cut(s) | 61, 117 |
| MseI | TTAA | 5 cut(s) | 18, 411, 419, 423, 503 |
| MspI | CCGG | 1 cut(s) | 116 |
| MspR9I | CCNGG | 1 cut(s) | 116 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 68, 263, 497 |
| NciI | CCSGG | 1 cut(s) | 116 |
| NdeII | GATC | 2 cut(s) | 193, 481 |
| NlaIII | CATG | 4 cut(s) | 102, 284, 305, 365 |
| NlaIV | GGNNCC | 2 cut(s) | 228, 540 |
| NspI | RCATGY | 1 cut(s) | 305 |
| PacI | TTAATTAA | 1 cut(s) | 423 |
| PciI | ACATGT | 1 cut(s) | 301 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 147 |
| PkrI | GCNGC | 2 cut(s) | 61, 97 |
| PleI | GAGTC | 3 cut(s) | 19, 279, 519 |
| PpsI | GAGTC | 3 cut(s) | 19, 279, 519 |
| PscI | ACATGT | 1 cut(s) | 301 |
| PspN4I | GGNNCC | 2 cut(s) | 228, 540 |
| PspPI | GGNCC | 1 cut(s) | 539 |
| RsaI | GTAC | 1 cut(s) | 355 |
| RsaNI | GTAC | 1 cut(s) | 354 |
| SaqAI | TTAA | 5 cut(s) | 18, 411, 419, 423, 503 |
| SatI | GCNGC | 2 cut(s) | 60, 96 |
| Sau3AI | GATC | 2 cut(s) | 193, 481 |
| Sau96I | GGNCC | 1 cut(s) | 539 |
| SchI | GAGTC | 3 cut(s) | 20, 279, 520 |
| ScrFI | CCNGG | 1 cut(s) | 116 |
| SduI | GDGCHC | 1 cut(s) | 231 |
| SetI | ASST | 9 cut(s) | 79, 109, 148, 205, 220, 259, 268, 334, 381 |
| SfaNI | GCATC | 2 cut(s) | 174, 325 |
| Sse9I | AATT | 5 cut(s) | 89, 241, 323, 420, 543 |
| SsiI | CCGC | 2 cut(s) | 96, 224 |
| StyD4I | CCNGG | 1 cut(s) | 114 |
| TaaI | ACNGT | 3 cut(s) | 122, 346, 417 |
| TasI | AATT | 5 cut(s) | 89, 241, 323, 420, 543 |
| TatI | WGTACW | 1 cut(s) | 353 |
| TauI | GCSGC | 1 cut(s) | 98 |
| Tru1I | TTAA | 5 cut(s) | 18, 411, 419, 423, 503 |
| Tru9I | TTAA | 5 cut(s) | 18, 411, 419, 423, 503 |
| TscAI | CASTG | 2 cut(s) | 175, 351 |
| TseI | GCWGC | 1 cut(s) | 59 |
| TspDTI | ATGAA | 2 cut(s) | 66, 420 |
| TspGWI | ACGGA | 1 cut(s) | 156 |
| TspRI | CASTG | 2 cut(s) | 175, 351 |
| XapI | RAATTY | 1 cut(s) | 241 |
| XceI | RCATGY | 1 cut(s) | 305 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 441 |