Rh6BG405900

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000072
Physical Location & Seq
Forward (+)
63298471 .. 63306677
8207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG405900.1

Sequence Viewer

Length: 1404 bp
ATGTTCCCATCTGATACTTGTGTCTCCTCTGTAATTACTCCGGACGGAACTTGGAATATTGCACTTCTATCCAATTGTTTTTCTGATTTTGAGGTGGCACTTATTCTATCTATCCCATTACCTACCAGAAATGTGGAAGATAAGCAAATTTGGCACTTTCATCATTCAGGCAAATATTCTATTAAGAGTGGTTATTGGGTTGCACAGGCTATTCAGGAACTTATGGCGGGTGATGAAGGATCTTCAATCTCTGTGGTGGATTGTACTTGGAAAAATTTATGGAAGTTGGCTGTTCCAAATAAGATCAAATTGTTCTTATGGCGATGTCTTCATGCAATTCTTCTTAGTGCCGGTAACTTATTTTCTAGACATATTATCTATTCTCCTATGTGTGGACGTTGTAATCAACAATTTGAATCAAAATTACATGCTTTATGGTATTGCAAAGCAGCGAAAGAAATGTGGTTATATCTCCTTTCTTTTTCTTTGGTGGGTTCCTGGAAAGGAGGCTCTTTCAATGACTTATTTCGCTATGCCACTAGTGTCTTTTCTTCTTCAGAAATGCTACTTTCTGTGTACATTAGTTGGAGTATTTGGAATGCACGGAATGATTATATTATTTGCAATAAGTTGGTTGCTGCTCCAATAGTATTACAGAAAGCTTATAGGTTGATGAAAGATTTTGCTAGTGCTAATATCGGGAGTTTCTTACCTATTGGGCAACAAAGAAACCTACAGCCATCTCACTCTACATGTCCCAAATGGGTGAAGCATGTTTTCCCTTTTGTGAAAATCAATGTTGATGGTGCAGTTAATATGGAGAATGGGCGTAGGGGCTTAGGGGTTGTGATTCGTCGTTGGGATGGTTTTGTATTACTGGTTGTTGTCAAATGTTTAACTGGAAATTTCTCTCCAAGGGCAACAGAGCTTTATGCTGCATCTTTAGGTCTTCATTTAGCAAGGAATGGAGTGTACACTCATGTATTGCTTGAGATGGGTGCCAAAGAGGTAGTAGACTTCCTTAACTCTACAGATGAAAGTTGGGCTGCTGATGGAGCTCTATTGACTGTAGTTAAATCTCTATTTTCTTATTTTGATGTAATTAAGTGTATTTTCTCTGATCATGCCCAGGCTCTAAGAGGTATATCACGGACCCGCTCCCGCCCTCGAAGAAGGCGAATGCTAACTCCTGGCCTTCGCTCTTTGGATGAGGTAGAACAATCTGCTGCGCAGCCTTCCAAAGCTGTTGGTGTTCCAGAAAATGTGGTGGTGCAGCATGACGGAGCTTTTGGTGGTACTGAGGTTTCTCACAACGTCCCAGACCCTAGAGAGATGTTCGAGTTGGTCATGCCGTTCTCTAAGGCTGGCCTTGAGGTGACGCTGGCAATCACAATATATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

467

Amino Acids

52.34

Weight (kDa)

8.94

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 88 - 155 1.3e-12 zinc-binding in reverse transcriptase
RVT_3 PF13456 266 - 372 8.4e-12 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1230
AccB1I GGYRCC 1 cut(s) 998
AccBSI CCGCTC 1 cut(s) 1158
AccI GTMKAC 1 cut(s) 1014
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 3 cut(s) 227, 1156, 1162
AclWI GGATC 1 cut(s) 247
AcsI RAATTY 3 cut(s) 147, 274, 904
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 4 cut(s) 265, 578, 974, 1297
AfiI CCNNNNNNNGG 1 cut(s) 392
AflIII ACRYGT 1 cut(s) 752
AgsI TTSAA 3 cut(s) 246, 416, 517
AhlI ACTAGT 1 cut(s) 539
AjnI CCWGG 3 cut(s) 497, 1128, 1189
AluBI AGCT 5 cut(s) 662, 928, 1058, 1244, 1286
AluI AGCT 5 cut(s) 662, 928, 1058, 1244, 1286
Alw21I GWGCWC 1 cut(s) 1060
Alw26I GTCTC 1 cut(s) 28
AlwI GGATC 1 cut(s) 247
Aor13HI TCCGGA 1 cut(s) 40
AoxI GGCC 2 cut(s) 1192, 1366
ApeKI GCWGC 7 cut(s) 449, 638, 935, 1046, 1226, 1231, 1273
ApoI RAATTY 3 cut(s) 147, 274, 904
ArsI GACNNNNNNTTYG 2 cut(s) 1271, 1303
AspLEI GCGC 1 cut(s) 1231
AspS9I GGNCC 1 cut(s) 1152
AsuHPI GGTGA 3 cut(s) 242, 778, 1387
AvaII GGWCC 1 cut(s) 1152
BaeI ACNNNNGTAYC 3 cut(s) 39, 1287, 1320
BanI GGYRCC 1 cut(s) 998
BanII GRGCYC 1 cut(s) 1060
BbsI GAAGAC 2 cut(s) 320, 941
Bbv12I GWGCWC 1 cut(s) 1060
BbvI GCAGC 7 cut(s) 461, 625, 922, 1033, 1213, 1243, 1285
BccI CCATC 6 cut(s) 16, 748, 797, 857, 988, 1046
BceAI ACGGC 1 cut(s) 1336
BciT130I CCWGG 3 cut(s) 499, 1130, 1191
BclI TGATCA 1 cut(s) 1120
BcoDI GTCTC 1 cut(s) 28
BcuI ACTAGT 1 cut(s) 539
BfaI CTAG 4 cut(s) 366, 540, 687, 1326
BfmI CTRYAG 3 cut(s) 734, 1029, 1068
BisI GCNGC 7 cut(s) 450, 639, 936, 1047, 1227, 1232, 1274
BlsI GCNGC 7 cut(s) 451, 640, 937, 1048, 1228, 1233, 1275
Bme1390I CCNGG 3 cut(s) 499, 1130, 1191
Bme18I GGWCC 1 cut(s) 1152
BmgT120I GGNCC 1 cut(s) 1152
BmiI GGNNCC 3 cut(s) 496, 1000, 1154
BmrFI CCNGG 3 cut(s) 499, 1130, 1191
BmsI GCATC 1 cut(s) 947
BpiI GAAGAC 2 cut(s) 320, 941
Bpu10I CCTNAGC 1 cut(s) 838
BpuEI CTTGAG 2 cut(s) 1010, 1391
BsaJI CCNNGG 2 cut(s) 914, 1128
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 2 cut(s) 882, 904
BseAI TCCGGA 1 cut(s) 40
BseBI CCWGG 3 cut(s) 499, 1130, 1191
BseDI CCNNGG 2 cut(s) 914, 1128
BseGI GGATG 2 cut(s) 868, 1213
BseLI CCNNNNNNNGG 1 cut(s) 392
BseMII CTCAG 1 cut(s) 1290
BseNI ACTGG 2 cut(s) 882, 904
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 7 cut(s) 461, 625, 922, 1033, 1213, 1243, 1285
BsgI GTGCAG 2 cut(s) 828, 1292
BshFI GGCC 2 cut(s) 1194, 1368
BshNI GGYRCC 1 cut(s) 998
BsiHKAI GWGCWC 1 cut(s) 1060
BsiSI CCGG 2 cut(s) 41, 351
BslFI GGGAC 2 cut(s) 741, 1301
BslI CCNNNNNNNGG 1 cut(s) 392
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 2 cut(s) 741, 1301
BsmI GAATGC 2 cut(s) 604, 1185
BsnI GGCC 2 cut(s) 1194, 1368
Bsp1286I GDGCHC 1 cut(s) 1060
Bsp13I TCCGGA 1 cut(s) 40
Bsp1407I TGTACA 2 cut(s) 576, 972
Bsp143I GATC 3 cut(s) 239, 303, 1120
BspACI CCGC 3 cut(s) 227, 1156, 1162
BspANI GGCC 2 cut(s) 1194, 1368
BspCNI CTCAG 1 cut(s) 1291
BspEI TCCGGA 1 cut(s) 40
BspLI GGNNCC 3 cut(s) 496, 1000, 1154
BspPI GGATC 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 998
BsrBI CCGCTC 1 cut(s) 1158
BsrFI RCCGGY 1 cut(s) 350
BsrGI TGTACA 2 cut(s) 576, 972
BsrI ACTGG 2 cut(s) 882, 904
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 2 cut(s) 914, 1128
BssMI GATC 3 cut(s) 239, 303, 1120
BssT1I CCWWGG 1 cut(s) 914
Bst2UI CCWGG 3 cut(s) 499, 1130, 1191
Bst4CI ACNGT 1 cut(s) 1069
BstAUI TGTACA 2 cut(s) 576, 972
BstC8I GCNNGC 2 cut(s) 1366, 1383
BstDEI CTNAG 5 cut(s) 344, 838, 1136, 1299, 1359
BstF5I GGATG 2 cut(s) 868, 1213
BstHHI GCGC 1 cut(s) 1231
BstKTI GATC 3 cut(s) 242, 306, 1123
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 3 cut(s) 239, 303, 1120
BstMWI GCNNNNNNNGC 2 cut(s) 151, 1055
BstNI CCWGG 3 cut(s) 499, 1130, 1191
BstNSI RCATGY 3 cut(s) 431, 756, 776
BstSCI CCNGG 3 cut(s) 497, 1128, 1189
BstSFI CTRYAG 3 cut(s) 734, 1029, 1068
BstV1I GCAGC 7 cut(s) 461, 625, 922, 1033, 1213, 1243, 1285
BstV2I GAAGAC 2 cut(s) 320, 941
BstX2I RGATCY 1 cut(s) 239
BstXI CCANNNNNNTGG 1 cut(s) 133
BstYI RGATCY 1 cut(s) 239
BsuRI GGCC 2 cut(s) 1194, 1368
BtgZI GCGATG 1 cut(s) 337
BtsCI GGATG 2 cut(s) 868, 1213
Cac8I GCNNGC 2 cut(s) 1366, 1383
CfoI GCGC 1 cut(s) 1231
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 1152
CseI GACGC 1 cut(s) 1387
Csp6I GTAC 4 cut(s) 264, 577, 973, 1296
CspCI CAANNNNNGTGG 2 cut(s) 234, 269
CviAII CATG 8 cut(s) 332, 428, 753, 773, 980, 1124, 1277, 1348
CviQI GTAC 4 cut(s) 264, 577, 973, 1296
DdeI CTNAG 5 cut(s) 344, 838, 1136, 1299, 1359
DpnI GATC 3 cut(s) 241, 305, 1122
DpnII GATC 3 cut(s) 239, 303, 1120
Ecl136II GAGCTC 1 cut(s) 1058
Eco130I CCWWGG 1 cut(s) 914
Eco24I GRGCYC 1 cut(s) 1060
Eco47I GGWCC 1 cut(s) 1152
Eco53kI GAGCTC 1 cut(s) 1058
Eco57I CTGAAG 1 cut(s) 540
EcoICRI GAGCTC 1 cut(s) 1058
EcoRII CCWGG 3 cut(s) 497, 1128, 1189
EcoT14I CCWWGG 1 cut(s) 914
EcoT38I GRGCYC 1 cut(s) 1060
ErhI CCWWGG 1 cut(s) 914
FaeI CATG 8 cut(s) 335, 431, 756, 776, 983, 1127, 1280, 1351
FaqI GGGAC 2 cut(s) 741, 1301
FatI CATG 8 cut(s) 331, 427, 752, 772, 979, 1123, 1276, 1347
FauI CCCGC 3 cut(s) 220, 1163, 1169
FbaI TGATCA 1 cut(s) 1120
FblI GTMKAC 1 cut(s) 1014
Fnu4HI GCNGC 7 cut(s) 450, 639, 936, 1047, 1227, 1232, 1274
FokI GGATG 2 cut(s) 875, 1220
FriOI GRGCYC 1 cut(s) 1060
Fsp4HI GCNGC 7 cut(s) 450, 639, 936, 1047, 1227, 1232, 1274
FspBI CTAG 4 cut(s) 366, 540, 687, 1326
FspI TGCGCA 1 cut(s) 1230
GlaI GCGC 1 cut(s) 1230
GluI GCNGC 7 cut(s) 450, 639, 936, 1047, 1227, 1232, 1274
HaeIII GGCC 2 cut(s) 1194, 1368
HapII CCGG 2 cut(s) 41, 351
HgaI GACGC 1 cut(s) 1387
HhaI GCGC 1 cut(s) 1231
Hin1II CATG 8 cut(s) 335, 431, 756, 776, 983, 1127, 1280, 1351
Hin6I GCGC 1 cut(s) 1229
HinP1I GCGC 1 cut(s) 1229
HindIII AAGCTT 1 cut(s) 660
HinfI GANTC 2 cut(s) 416, 850
HpaII CCGG 2 cut(s) 41, 351
HphI GGTGA 3 cut(s) 242, 778, 1387
Hpy166II GTNNAC 5 cut(s) 395, 577, 973, 975, 1015
Hpy188I TCNGA 4 cut(s) 13, 85, 559, 1120
Hpy188III TCNNGA 5 cut(s) 41, 215, 366, 700, 1256
Hpy8I GTNNAC 5 cut(s) 395, 577, 973, 975, 1015
Hpy99I CGWCG 1 cut(s) 858
HpyAV CCTTC 4 cut(s) 230, 1167, 1205, 1245
HpyCH4III ACNGT 1 cut(s) 1069
HpyCH4IV ACGT 2 cut(s) 397, 1314
HpyCH4V TGCA 9 cut(s) 62, 203, 335, 444, 602, 624, 809, 938, 1273
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 1055
HpyF3I CTNAG 5 cut(s) 344, 838, 1136, 1299, 1359
HpySE526I ACGT 2 cut(s) 397, 1314
Hsp92II CATG 8 cut(s) 335, 431, 756, 776, 983, 1127, 1280, 1351
HspAI GCGC 1 cut(s) 1229
Kpn2I TCCGGA 1 cut(s) 40
Ksp22I TGATCA 1 cut(s) 1120
Kzo9I GATC 3 cut(s) 239, 303, 1120
LmnI GCTCC 4 cut(s) 646, 1055, 1163, 1283
Lsp1109I GCAGC 7 cut(s) 461, 625, 922, 1033, 1213, 1243, 1285
LweI GCATC 1 cut(s) 947
MaeI CTAG 4 cut(s) 366, 540, 687, 1326
MaeII ACGT 2 cut(s) 397, 1314
MaeIII GTNAC 2 cut(s) 353, 1375
MalI GATC 3 cut(s) 241, 305, 1122
MbiI CCGCTC 1 cut(s) 1158
MboI GATC 3 cut(s) 239, 303, 1120
MboII GAAGA 8 cut(s) 149, 234, 320, 332, 543, 546, 941, 1182
MfeI CAATTG 1 cut(s) 73
MflI RGATCY 1 cut(s) 239
MhlI GDGCHC 1 cut(s) 1060
MmeI TCCRAC 1 cut(s) 566
MnlI CCTC 9 cut(s) 37, 85, 500, 1000, 1133, 1176, 1204, 1294, 1366
MroI TCCGGA 1 cut(s) 40
MseI TTAA 6 cut(s) 183, 813, 896, 1023, 1074, 1104
MspI CCGG 2 cut(s) 41, 351
MspR9I CCNGG 3 cut(s) 499, 1130, 1191
MunI CAATTG 1 cut(s) 73
Mva1269I GAATGC 2 cut(s) 604, 1185
MvaI CCWGG 3 cut(s) 499, 1130, 1191
MwoI GCNNNNNNNGC 2 cut(s) 151, 1055
NdeII GATC 3 cut(s) 239, 303, 1120
NlaIII CATG 8 cut(s) 335, 431, 756, 776, 983, 1127, 1280, 1351
NlaIV GGNNCC 3 cut(s) 496, 1000, 1154
NmuCI GTSAC 1 cut(s) 1375
NsbI TGCGCA 1 cut(s) 1230
NspI RCATGY 3 cut(s) 431, 756, 776
PciI ACATGT 1 cut(s) 752
PcsI WCGNNNNNNNCGW 1 cut(s) 1174
PctI GAATGC 2 cut(s) 604, 1185
PfeI GAWTC 2 cut(s) 416, 850
PfoI TCCNGGA 1 cut(s) 497
PkrI GCNGC 7 cut(s) 451, 640, 937, 1048, 1228, 1233, 1275
PscI ACATGT 1 cut(s) 752
Psp124BI GAGCTC 1 cut(s) 1060
Psp6I CCWGG 3 cut(s) 497, 1128, 1189
PspGI CCWGG 3 cut(s) 497, 1128, 1189
PspN4I GGNNCC 3 cut(s) 496, 1000, 1154
PspPI GGNCC 1 cut(s) 1152
PsuI RGATCY 1 cut(s) 239
RsaI GTAC 4 cut(s) 265, 578, 974, 1297
RsaNI GTAC 4 cut(s) 264, 577, 973, 1296
SacI GAGCTC 1 cut(s) 1060
SaqAI TTAA 6 cut(s) 183, 813, 896, 1023, 1074, 1104
SatI GCNGC 7 cut(s) 450, 639, 936, 1047, 1227, 1232, 1274
Sau3AI GATC 3 cut(s) 239, 303, 1120
Sau96I GGNCC 1 cut(s) 1152
ScrFI CCNGG 3 cut(s) 499, 1130, 1191
SduI GDGCHC 1 cut(s) 1060
SfaNI GCATC 1 cut(s) 947
SfcI CTRYAG 3 cut(s) 734, 1029, 1068
SinI GGWCC 1 cut(s) 1152
SmlI CTYRAG 2 cut(s) 989, 1370
SmoI CTYRAG 2 cut(s) 989, 1370
SpeI ACTAGT 1 cut(s) 539
SsiI CCGC 3 cut(s) 227, 1156, 1162
SspI AATATT 2 cut(s) 58, 176
SspMI CTAG 4 cut(s) 366, 540, 687, 1326
SstI GAGCTC 1 cut(s) 1060
StyD4I CCNGG 3 cut(s) 497, 1128, 1189
StyI CCWWGG 1 cut(s) 914
TaaI ACNGT 1 cut(s) 1069
TaiI ACGT 2 cut(s) 400, 1317
TaqI TCGA 2 cut(s) 1168, 1338
TatI WGTACW 3 cut(s) 263, 576, 972
TfiI GAWTC 2 cut(s) 416, 850
Tru1I TTAA 6 cut(s) 183, 813, 896, 1023, 1074, 1104
Tru9I TTAA 6 cut(s) 183, 813, 896, 1023, 1074, 1104
TseFI GTSAC 1 cut(s) 1375
TseI GCWGC 7 cut(s) 449, 638, 935, 1046, 1226, 1231, 1273
Tsp45I GTSAC 1 cut(s) 1375
TspDTI ATGAA 6 cut(s) 149, 249, 320, 689, 941, 1050
TspGWI ACGGA 4 cut(s) 60, 619, 1165, 1296
VpaK11BI GGWCC 1 cut(s) 1152
XapI RAATTY 3 cut(s) 147, 274, 904
XbaI TCTAGA 1 cut(s) 365
XceI RCATGY 3 cut(s) 431, 756, 776
XmiI GTMKAC 1 cut(s) 1014
XspI CTAG 4 cut(s) 366, 540, 687, 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.