Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 138 - 260 | 2e-23 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 458 |
| AciI | CCGC | 3 cut(s) | 86, 239, 632 |
| AclWI | GGATC | 1 cut(s) | 438 |
| AcsI | RAATTY | 3 cut(s) | 67, 517, 791 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 395, 468, 553, 664 |
| AflIII | ACRYGT | 1 cut(s) | 133 |
| AgsI | TTSAA | 1 cut(s) | 791 |
| AjnI | CCWGG | 1 cut(s) | 508 |
| AluBI | AGCT | 4 cut(s) | 149, 503, 694, 787 |
| AluI | AGCT | 4 cut(s) | 149, 503, 694, 787 |
| Alw21I | GWGCWC | 1 cut(s) | 676 |
| AlwI | GGATC | 1 cut(s) | 438 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 625 |
| AoxI | GGCC | 2 cut(s) | 226, 386 |
| ApeKI | GCWGC | 2 cut(s) | 619, 755 |
| ApoI | RAATTY | 3 cut(s) | 67, 517, 791 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 555, 587 |
| AspS9I | GGNCC | 3 cut(s) | 27, 655, 726 |
| AsuHPI | GGTGA | 2 cut(s) | 253, 494 |
| AvaII | GGWCC | 3 cut(s) | 27, 655, 726 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 559, 592 |
| BanI | GGYRCC | 1 cut(s) | 458 |
| BbsI | GAAGAC | 1 cut(s) | 338 |
| Bbv12I | GWGCWC | 1 cut(s) | 676 |
| BbvI | GCAGC | 2 cut(s) | 631, 767 |
| BccI | CCATC | 4 cut(s) | 347, 413, 662, 694 |
| BciT130I | CCWGG | 1 cut(s) | 510 |
| BciVI | GTATCC | 1 cut(s) | 587 |
| BfaI | CTAG | 1 cut(s) | 150 |
| BfuI | GTATCC | 1 cut(s) | 587 |
| BisI | GCNGC | 3 cut(s) | 620, 633, 756 |
| BlsI | GCNGC | 3 cut(s) | 621, 634, 757 |
| Bme1390I | CCNGG | 1 cut(s) | 510 |
| Bme18I | GGWCC | 3 cut(s) | 27, 655, 726 |
| BmgT120I | GGNCC | 3 cut(s) | 27, 655, 726 |
| BmiI | GGNNCC | 1 cut(s) | 460 |
| BmrFI | CCNGG | 1 cut(s) | 510 |
| BmsI | GCATC | 2 cut(s) | 199, 349 |
| BpiI | GAAGAC | 1 cut(s) | 338 |
| BpmI | CTGGAG | 1 cut(s) | 93 |
| Bpu10I | CCTNAGC | 1 cut(s) | 235 |
| BsaJI | CCNNGG | 1 cut(s) | 737 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 395, 468, 553, 664 |
| Bse1I | ACTGG | 2 cut(s) | 460, 809 |
| BseBI | CCWGG | 1 cut(s) | 510 |
| BseDI | CCNNGG | 1 cut(s) | 737 |
| BseGI | GGATG | 1 cut(s) | 673 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 395, 468, 553, 664 |
| BseMII | CTCAG | 2 cut(s) | 350, 673 |
| BseNI | ACTGG | 2 cut(s) | 460, 809 |
| BseRI | GAGGAG | 3 cut(s) | 320, 323, 397 |
| BseXI | GCAGC | 2 cut(s) | 631, 767 |
| BshFI | GGCC | 2 cut(s) | 228, 388 |
| BshNI | GGYRCC | 1 cut(s) | 458 |
| BsiHKAI | GWGCWC | 1 cut(s) | 676 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 395, 468, 553, 664 |
| BsmI | GAATGC | 1 cut(s) | 88 |
| BsnI | GGCC | 2 cut(s) | 228, 388 |
| Bsp1286I | GDGCHC | 1 cut(s) | 676 |
| Bsp143I | GATC | 1 cut(s) | 430 |
| BspACI | CCGC | 3 cut(s) | 86, 239, 632 |
| BspANI | GGCC | 2 cut(s) | 228, 388 |
| BspCNI | CTCAG | 2 cut(s) | 349, 672 |
| BspLI | GGNNCC | 1 cut(s) | 460 |
| BspPI | GGATC | 1 cut(s) | 438 |
| BspT107I | GGYRCC | 1 cut(s) | 458 |
| BsrI | ACTGG | 2 cut(s) | 460, 809 |
| BssECI | CCNNGG | 1 cut(s) | 737 |
| BssMI | GATC | 1 cut(s) | 430 |
| BssT1I | CCWWGG | 1 cut(s) | 737 |
| Bst2UI | CCWGG | 1 cut(s) | 510 |
| Bst4CI | ACNGT | 3 cut(s) | 126, 145, 766 |
| Bst6I | CTCTTC | 1 cut(s) | 17 |
| BstDEI | CTNAG | 4 cut(s) | 235, 336, 524, 659 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 393 |
| BstF5I | GGATG | 1 cut(s) | 673 |
| BstKTI | GATC | 1 cut(s) | 433 |
| BstMBI | GATC | 1 cut(s) | 430 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 196, 752, 776 |
| BstNI | CCWGG | 1 cut(s) | 510 |
| BstNSI | RCATGY | 1 cut(s) | 137 |
| BstSCI | CCNGG | 1 cut(s) | 508 |
| BstV1I | GCAGC | 2 cut(s) | 631, 767 |
| BstV2I | GAAGAC | 1 cut(s) | 338 |
| BstX2I | RGATCY | 1 cut(s) | 430 |
| BstYI | RGATCY | 1 cut(s) | 430 |
| BsuI | GTATCC | 1 cut(s) | 587 |
| BsuRI | GGCC | 2 cut(s) | 228, 388 |
| BtsCI | GGATG | 1 cut(s) | 673 |
| BtsIMutI | CAGTG | 1 cut(s) | 667 |
| CaiI | CAGNNNCTG | 1 cut(s) | 625 |
| Cfr13I | GGNCC | 3 cut(s) | 27, 655, 726 |
| CviAII | CATG | 6 cut(s) | 134, 186, 221, 270, 378, 717 |
| CviJI | RGCY | 9 cut(s) | 149, 228, 233, 388, 503, 635, 694, 746, 787 |
| CviKI_1 | RGCY | 9 cut(s) | 149, 228, 233, 388, 503, 635, 694, 746, 787 |
| DdeI | CTNAG | 4 cut(s) | 235, 336, 524, 659 |
| DpnI | GATC | 1 cut(s) | 432 |
| DpnII | GATC | 1 cut(s) | 430 |
| Eam1104I | CTCTTC | 1 cut(s) | 17 |
| EarI | CTCTTC | 1 cut(s) | 17 |
| Eco130I | CCWWGG | 1 cut(s) | 737 |
| Eco147I | AGGCCT | 1 cut(s) | 388 |
| Eco47I | GGWCC | 3 cut(s) | 27, 655, 726 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 393 |
| EcoO109I | RGGNCCY | 2 cut(s) | 27, 655 |
| EcoRI | GAATTC | 1 cut(s) | 791 |
| EcoRII | CCWGG | 1 cut(s) | 508 |
| EcoT14I | CCWWGG | 1 cut(s) | 737 |
| ErhI | CCWWGG | 1 cut(s) | 737 |
| FaeI | CATG | 6 cut(s) | 137, 189, 224, 273, 381, 720 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 14, 46 |
| FatI | CATG | 6 cut(s) | 133, 185, 220, 269, 377, 716 |
| Fnu4HI | GCNGC | 3 cut(s) | 620, 633, 756 |
| FokI | GGATG | 1 cut(s) | 680 |
| Fsp4HI | GCNGC | 3 cut(s) | 620, 633, 756 |
| FspBI | CTAG | 1 cut(s) | 150 |
| GluI | GCNGC | 3 cut(s) | 620, 633, 756 |
| GsuI | CTGGAG | 1 cut(s) | 93 |
| HaeIII | GGCC | 2 cut(s) | 228, 388 |
| Hin1II | CATG | 6 cut(s) | 137, 189, 224, 273, 381, 720 |
| HincII | GTYRAC | 2 cut(s) | 7, 559 |
| HindII | GTYRAC | 2 cut(s) | 7, 559 |
| HindIII | AAGCTT | 1 cut(s) | 692 |
| HinfI | GANTC | 4 cut(s) | 334, 444, 641, 713 |
| HpaI | GTTAAC | 1 cut(s) | 559 |
| HphI | GGTGA | 2 cut(s) | 253, 494 |
| Hpy166II | GTNNAC | 2 cut(s) | 7, 559 |
| Hpy188I | TCNGA | 1 cut(s) | 699 |
| Hpy188III | TCNNGA | 2 cut(s) | 72, 638 |
| Hpy8I | GTNNAC | 2 cut(s) | 7, 559 |
| HpyAV | CCTTC | 5 cut(s) | 40, 103, 208, 321, 676 |
| HpyCH4III | ACNGT | 3 cut(s) | 126, 145, 766 |
| HpyCH4V | TGCA | 7 cut(s) | 18, 185, 300, 468, 593, 619, 734 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 196, 752, 776 |
| HpyF3I | CTNAG | 4 cut(s) | 235, 336, 524, 659 |
| Hsp92II | CATG | 6 cut(s) | 137, 189, 224, 273, 381, 720 |
| KspAI | GTTAAC | 1 cut(s) | 559 |
| Kzo9I | GATC | 1 cut(s) | 430 |
| LmnI | GCTCC | 3 cut(s) | 310, 422, 784 |
| Lsp1109I | GCAGC | 2 cut(s) | 631, 767 |
| LweI | GCATC | 2 cut(s) | 199, 349 |
| MaeI | CTAG | 1 cut(s) | 150 |
| MalI | GATC | 1 cut(s) | 432 |
| MboI | GATC | 1 cut(s) | 430 |
| MboII | GAAGA | 2 cut(s) | 34, 343 |
| MflI | RGATCY | 1 cut(s) | 430 |
| MhlI | GDGCHC | 1 cut(s) | 676 |
| MluCI | AATT | 4 cut(s) | 67, 261, 517, 791 |
| MlyI | GAGTC | 3 cut(s) | 328, 453, 722 |
| MmeI | TCCRAC | 4 cut(s) | 59, 430, 565, 762 |
| MseI | TTAA | 3 cut(s) | 51, 410, 558 |
| MslI | CAYNNNNRTG | 1 cut(s) | 345 |
| MspR9I | CCNGG | 1 cut(s) | 510 |
| Mva1269I | GAATGC | 1 cut(s) | 88 |
| MvaI | CCWGG | 1 cut(s) | 510 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 196, 752, 776 |
| NdeII | GATC | 1 cut(s) | 430 |
| NlaIII | CATG | 6 cut(s) | 137, 189, 224, 273, 381, 720 |
| NlaIV | GGNNCC | 1 cut(s) | 460 |
| NspI | RCATGY | 1 cut(s) | 137 |
| PceI | AGGCCT | 1 cut(s) | 388 |
| PciI | ACATGT | 1 cut(s) | 133 |
| PctI | GAATGC | 1 cut(s) | 88 |
| PfeI | GAWTC | 1 cut(s) | 641 |
| PkrI | GCNGC | 3 cut(s) | 621, 634, 757 |
| PleI | GAGTC | 3 cut(s) | 328, 452, 721 |
| PpsI | GAGTC | 3 cut(s) | 328, 452, 721 |
| PpuMI | RGGWCCY | 2 cut(s) | 27, 655 |
| PscI | ACATGT | 1 cut(s) | 133 |
| Psp5II | RGGWCCY | 2 cut(s) | 27, 655 |
| Psp6I | CCWGG | 1 cut(s) | 508 |
| PspGI | CCWGG | 1 cut(s) | 508 |
| PspN4I | GGNNCC | 1 cut(s) | 460 |
| PspPI | GGNCC | 3 cut(s) | 27, 655, 726 |
| PspPPI | RGGWCCY | 2 cut(s) | 27, 655 |
| PstNI | CAGNNNCTG | 1 cut(s) | 625 |
| PsuI | RGATCY | 1 cut(s) | 430 |
| RseI | CAYNNNNRTG | 1 cut(s) | 345 |
| SaqAI | TTAA | 3 cut(s) | 51, 410, 558 |
| SatI | GCNGC | 3 cut(s) | 620, 633, 756 |
| Sau3AI | GATC | 1 cut(s) | 430 |
| Sau96I | GGNCC | 3 cut(s) | 27, 655, 726 |
| SchI | GAGTC | 3 cut(s) | 328, 453, 722 |
| ScrFI | CCNGG | 1 cut(s) | 510 |
| SduI | GDGCHC | 1 cut(s) | 676 |
| SfaNI | GCATC | 2 cut(s) | 199, 349 |
| SinI | GGWCC | 3 cut(s) | 27, 655, 726 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 345 |
| Sse9I | AATT | 4 cut(s) | 67, 261, 517, 791 |
| SseBI | AGGCCT | 1 cut(s) | 388 |
| SsiI | CCGC | 3 cut(s) | 86, 239, 632 |
| SspI | AATATT | 1 cut(s) | 415 |
| SspMI | CTAG | 1 cut(s) | 150 |
| StuI | AGGCCT | 1 cut(s) | 388 |
| StyD4I | CCNGG | 1 cut(s) | 508 |
| StyI | CCWWGG | 1 cut(s) | 737 |
| TaaI | ACNGT | 3 cut(s) | 126, 145, 766 |
| TasI | AATT | 4 cut(s) | 67, 261, 517, 791 |
| TauI | GCSGC | 1 cut(s) | 635 |
| TfiI | GAWTC | 1 cut(s) | 641 |
| Tru1I | TTAA | 3 cut(s) | 51, 410, 558 |
| Tru9I | TTAA | 3 cut(s) | 51, 410, 558 |
| TscAI | CASTG | 1 cut(s) | 667 |
| TseI | GCWGC | 2 cut(s) | 619, 755 |
| TspDTI | ATGAA | 1 cut(s) | 209 |
| TspRI | CASTG | 1 cut(s) | 667 |
| VpaK11BI | GGWCC | 3 cut(s) | 27, 655, 726 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 393 |
| XapI | RAATTY | 3 cut(s) | 67, 517, 791 |
| XceI | RCATGY | 1 cut(s) | 137 |
| XspI | CTAG | 1 cut(s) | 150 |