Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 278 |
| Acc36I | ACCTGC | 1 cut(s) | 278 |
| AciI | CCGC | 3 cut(s) | 6, 40, 264 |
| AclWI | GGATC | 2 cut(s) | 492, 505 |
| AfaI | GTAC | 1 cut(s) | 366 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 307, 427 |
| AluBI | AGCT | 4 cut(s) | 112, 221, 581, 596 |
| AluI | AGCT | 4 cut(s) | 112, 221, 581, 596 |
| Alw21I | GWGCWC | 1 cut(s) | 141 |
| Alw44I | GTGCAC | 1 cut(s) | 137 |
| AlwI | GGATC | 2 cut(s) | 492, 505 |
| Ama87I | CYCGRG | 1 cut(s) | 597 |
| AoxI | GGCC | 1 cut(s) | 166 |
| ApaLI | GTGCAC | 1 cut(s) | 137 |
| ApeKI | GCWGC | 4 cut(s) | 182, 348, 581, 602 |
| AseI | ATTAAT | 1 cut(s) | 477 |
| AsuC2I | CCSGG | 1 cut(s) | 422 |
| AsuHPI | GGTGA | 3 cut(s) | 85, 410, 449 |
| AvaI | CYCGRG | 1 cut(s) | 597 |
| BaeGI | GKGCMC | 1 cut(s) | 141 |
| BamHI | GGATCC | 1 cut(s) | 497 |
| BbsI | GAAGAC | 1 cut(s) | 534 |
| Bbv12I | GWGCWC | 1 cut(s) | 141 |
| BbvI | GCAGC | 4 cut(s) | 194, 360, 568, 614 |
| BccI | CCATC | 1 cut(s) | 488 |
| BclI | TGATCA | 1 cut(s) | 171 |
| BcnI | CCSGG | 1 cut(s) | 422 |
| BfaI | CTAG | 1 cut(s) | 546 |
| BfuAI | ACCTGC | 1 cut(s) | 278 |
| BisI | GCNGC | 4 cut(s) | 183, 349, 582, 603 |
| BlsI | GCNGC | 4 cut(s) | 184, 350, 583, 604 |
| Bme1390I | CCNGG | 1 cut(s) | 422 |
| BmeT110I | CYCGRG | 1 cut(s) | 597 |
| BmiI | GGNNCC | 1 cut(s) | 499 |
| BmrFI | CCNGG | 1 cut(s) | 422 |
| BmsI | GCATC | 2 cut(s) | 66, 430 |
| BpiI | GAAGAC | 1 cut(s) | 534 |
| BpuMI | CCSGG | 1 cut(s) | 422 |
| BsaJI | CCNNGG | 2 cut(s) | 420, 501 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 307, 427 |
| Bse1I | ACTGG | 1 cut(s) | 538 |
| BseDI | CCNNGG | 2 cut(s) | 420, 501 |
| BseGI | GGATG | 1 cut(s) | 390 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 307, 427 |
| BseNI | ACTGG | 1 cut(s) | 538 |
| BseSI | GKGCMC | 1 cut(s) | 141 |
| BseXI | GCAGC | 4 cut(s) | 194, 360, 568, 614 |
| BshFI | GGCC | 1 cut(s) | 168 |
| BsiHKAI | GWGCWC | 1 cut(s) | 141 |
| BsiHKCI | CYCGRG | 1 cut(s) | 597 |
| BsiSI | CCGG | 1 cut(s) | 422 |
| BslFI | GGGAC | 1 cut(s) | 403 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 307, 427 |
| BsmFI | GGGAC | 1 cut(s) | 403 |
| BsnI | GGCC | 1 cut(s) | 168 |
| BsoBI | CYCGRG | 1 cut(s) | 597 |
| Bsp1286I | GDGCHC | 1 cut(s) | 141 |
| Bsp143I | GATC | 2 cut(s) | 171, 497 |
| BspACI | CCGC | 3 cut(s) | 6, 40, 264 |
| BspANI | GGCC | 1 cut(s) | 168 |
| BspLI | GGNNCC | 1 cut(s) | 499 |
| BspMI | ACCTGC | 1 cut(s) | 278 |
| BspPI | GGATC | 2 cut(s) | 492, 505 |
| BsrI | ACTGG | 1 cut(s) | 538 |
| BssECI | CCNNGG | 2 cut(s) | 420, 501 |
| BssMI | GATC | 2 cut(s) | 171, 497 |
| BssT1I | CCWWGG | 1 cut(s) | 501 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 608 |
| BstC8I | GCNNGC | 2 cut(s) | 81, 254 |
| BstDEI | CTNAG | 1 cut(s) | 177 |
| BstF5I | GGATG | 1 cut(s) | 390 |
| BstKTI | GATC | 2 cut(s) | 174, 500 |
| BstMBI | GATC | 2 cut(s) | 171, 497 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 602, 608 |
| BstNSI | RCATGY | 2 cut(s) | 83, 145 |
| BstSCI | CCNGG | 1 cut(s) | 420 |
| BstSLI | GKGCMC | 1 cut(s) | 141 |
| BstV1I | GCAGC | 4 cut(s) | 194, 360, 568, 614 |
| BstV2I | GAAGAC | 1 cut(s) | 534 |
| BstX2I | RGATCY | 1 cut(s) | 497 |
| BstYI | RGATCY | 1 cut(s) | 497 |
| BsuRI | GGCC | 1 cut(s) | 168 |
| BtsCI | GGATG | 1 cut(s) | 390 |
| BtsI | GCAGTG | 1 cut(s) | 380 |
| BtsIMutI | CAGTG | 1 cut(s) | 380 |
| BveI | ACCTGC | 1 cut(s) | 278 |
| Cac8I | GCNNGC | 2 cut(s) | 81, 254 |
| Csp6I | GTAC | 1 cut(s) | 365 |
| CviAII | CATG | 3 cut(s) | 80, 142, 391 |
| CviJI | RGCY | 9 cut(s) | 104, 112, 168, 221, 300, 356, 461, 581, 596 |
| CviKI_1 | RGCY | 9 cut(s) | 104, 112, 168, 221, 300, 356, 461, 581, 596 |
| CviQI | GTAC | 1 cut(s) | 365 |
| DdeI | CTNAG | 1 cut(s) | 177 |
| DpnI | GATC | 2 cut(s) | 173, 499 |
| DpnII | GATC | 2 cut(s) | 171, 497 |
| Eco130I | CCWWGG | 1 cut(s) | 501 |
| Eco147I | AGGCCT | 1 cut(s) | 168 |
| Eco88I | CYCGRG | 1 cut(s) | 597 |
| EcoT14I | CCWWGG | 1 cut(s) | 501 |
| EcoT22I | ATGCAT | 2 cut(s) | 81, 85 |
| ErhI | CCWWGG | 1 cut(s) | 501 |
| FaeI | CATG | 3 cut(s) | 83, 145, 394 |
| FaqI | GGGAC | 1 cut(s) | 403 |
| FatI | CATG | 3 cut(s) | 79, 141, 390 |
| FauI | CCCGC | 1 cut(s) | 257 |
| FbaI | TGATCA | 1 cut(s) | 171 |
| Fnu4HI | GCNGC | 4 cut(s) | 183, 349, 582, 603 |
| FokI | GGATG | 1 cut(s) | 397 |
| Fsp4HI | GCNGC | 4 cut(s) | 183, 349, 582, 603 |
| FspBI | CTAG | 1 cut(s) | 546 |
| GluI | GCNGC | 4 cut(s) | 183, 349, 582, 603 |
| HaeIII | GGCC | 1 cut(s) | 168 |
| HapII | CCGG | 1 cut(s) | 422 |
| Hin1II | CATG | 3 cut(s) | 83, 145, 394 |
| HincII | GTYRAC | 1 cut(s) | 330 |
| HindII | GTYRAC | 1 cut(s) | 330 |
| HinfI | GANTC | 3 cut(s) | 12, 467, 529 |
| HpaII | CCGG | 1 cut(s) | 422 |
| HphI | GGTGA | 3 cut(s) | 85, 410, 449 |
| Hpy166II | GTNNAC | 2 cut(s) | 139, 330 |
| Hpy188III | TCNNGA | 1 cut(s) | 16 |
| Hpy8I | GTNNAC | 2 cut(s) | 139, 330 |
| HpyAV | CCTTC | 3 cut(s) | 20, 235, 428 |
| HpyCH4V | TGCA | 6 cut(s) | 79, 83, 139, 145, 348, 573 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 602, 608 |
| HpyF3I | CTNAG | 1 cut(s) | 177 |
| Hsp92II | CATG | 3 cut(s) | 83, 145, 394 |
| Ksp22I | TGATCA | 1 cut(s) | 171 |
| Kzo9I | GATC | 2 cut(s) | 171, 497 |
| Lsp1109I | GCAGC | 4 cut(s) | 194, 360, 568, 614 |
| LweI | GCATC | 2 cut(s) | 66, 430 |
| MaeI | CTAG | 1 cut(s) | 546 |
| MaeIII | GTNAC | 2 cut(s) | 154, 398 |
| MalI | GATC | 2 cut(s) | 173, 499 |
| MboI | GATC | 2 cut(s) | 171, 497 |
| MboII | GAAGA | 5 cut(s) | 77, 250, 445, 462, 534 |
| MflI | RGATCY | 1 cut(s) | 497 |
| MhlI | GDGCHC | 1 cut(s) | 141 |
| MlyI | GAGTC | 1 cut(s) | 538 |
| MnlI | CCTC | 5 cut(s) | 40, 287, 327, 346, 421 |
| Mph1103I | ATGCAT | 2 cut(s) | 81, 85 |
| MseI | TTAA | 1 cut(s) | 477 |
| MspI | CCGG | 1 cut(s) | 422 |
| MspR9I | CCNGG | 1 cut(s) | 422 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 602, 608 |
| NciI | CCSGG | 1 cut(s) | 422 |
| NdeII | GATC | 2 cut(s) | 171, 497 |
| NlaIII | CATG | 3 cut(s) | 83, 145, 394 |
| NlaIV | GGNNCC | 1 cut(s) | 499 |
| NmuCI | GTSAC | 2 cut(s) | 154, 398 |
| NsiI | ATGCAT | 2 cut(s) | 81, 85 |
| NspI | RCATGY | 2 cut(s) | 83, 145 |
| PaeI | GCATGC | 1 cut(s) | 83 |
| PaqCI | CACCTGC | 1 cut(s) | 278 |
| PceI | AGGCCT | 1 cut(s) | 168 |
| PfeI | GAWTC | 2 cut(s) | 12, 467 |
| PkrI | GCNGC | 4 cut(s) | 184, 350, 583, 604 |
| PleI | GAGTC | 1 cut(s) | 537 |
| PpsI | GAGTC | 1 cut(s) | 537 |
| PshBI | ATTAAT | 1 cut(s) | 477 |
| PspN4I | GGNNCC | 1 cut(s) | 499 |
| PsuI | RGATCY | 1 cut(s) | 497 |
| RsaI | GTAC | 1 cut(s) | 366 |
| RsaNI | GTAC | 1 cut(s) | 365 |
| SaqAI | TTAA | 1 cut(s) | 477 |
| SatI | GCNGC | 4 cut(s) | 183, 349, 582, 603 |
| Sau3AI | GATC | 2 cut(s) | 171, 497 |
| SchI | GAGTC | 1 cut(s) | 538 |
| ScrFI | CCNGG | 1 cut(s) | 422 |
| SduI | GDGCHC | 1 cut(s) | 141 |
| SetI | ASST | 8 cut(s) | 31, 114, 223, 292, 432, 439, 583, 598 |
| SfaNI | GCATC | 2 cut(s) | 66, 430 |
| SphI | GCATGC | 1 cut(s) | 83 |
| SseBI | AGGCCT | 1 cut(s) | 168 |
| SsiI | CCGC | 3 cut(s) | 6, 40, 264 |
| SspMI | CTAG | 1 cut(s) | 546 |
| StuI | AGGCCT | 1 cut(s) | 168 |
| StyD4I | CCNGG | 1 cut(s) | 420 |
| StyI | CCWWGG | 1 cut(s) | 501 |
| TaqI | TCGA | 1 cut(s) | 15 |
| TfiI | GAWTC | 2 cut(s) | 12, 467 |
| Tru1I | TTAA | 1 cut(s) | 477 |
| Tru9I | TTAA | 1 cut(s) | 477 |
| TscAI | CASTG | 1 cut(s) | 380 |
| TseFI | GTSAC | 2 cut(s) | 154, 398 |
| TseI | GCWGC | 4 cut(s) | 182, 348, 581, 602 |
| Tsp45I | GTSAC | 2 cut(s) | 154, 398 |
| TspDTI | ATGAA | 1 cut(s) | 525 |
| TspRI | CASTG | 1 cut(s) | 380 |
| VneI | GTGCAC | 1 cut(s) | 137 |
| VspI | ATTAAT | 1 cut(s) | 477 |
| XceI | RCATGY | 2 cut(s) | 83, 145 |
| XspI | CTAG | 1 cut(s) | 546 |
| Zsp2I | ATGCAT | 2 cut(s) | 81, 85 |