Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 34 - 110 | 1.8e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 128, 188 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 83 |
| AluBI | AGCT | 4 cut(s) | 91, 185, 239, 322 |
| AluI | AGCT | 4 cut(s) | 91, 185, 239, 322 |
| Ama87I | CYCGRG | 1 cut(s) | 22 |
| AoxI | GGCC | 1 cut(s) | 10 |
| ApeKI | GCWGC | 4 cut(s) | 70, 113, 185, 319 |
| AseI | ATTAAT | 2 cut(s) | 123, 327 |
| AspS9I | GGNCC | 1 cut(s) | 10 |
| AsuC2I | CCSGG | 2 cut(s) | 23, 24 |
| AsuHPI | GGTGA | 1 cut(s) | 274 |
| AsuNHI | GCTAGC | 1 cut(s) | 235 |
| AvaI | CYCGRG | 1 cut(s) | 22 |
| BbvI | GCAGC | 3 cut(s) | 82, 125, 172 |
| BccI | CCATC | 2 cut(s) | 101, 253 |
| BcnI | CCSGG | 2 cut(s) | 23, 24 |
| BfaI | CTAG | 1 cut(s) | 236 |
| BisI | GCNGC | 4 cut(s) | 71, 114, 186, 320 |
| BlsI | GCNGC | 4 cut(s) | 72, 115, 187, 321 |
| Bme1390I | CCNGG | 2 cut(s) | 23, 24 |
| BmeT110I | CYCGRG | 1 cut(s) | 22 |
| BmgT120I | GGNCC | 1 cut(s) | 10 |
| BmrFI | CCNGG | 2 cut(s) | 23, 24 |
| BmrI | ACTGGG | 1 cut(s) | 203 |
| BmsI | GCATC | 1 cut(s) | 125 |
| BmtI | GCTAGC | 1 cut(s) | 239 |
| BmuI | ACTGGG | 1 cut(s) | 203 |
| BpuMI | CCSGG | 2 cut(s) | 23, 24 |
| BsaJI | CCNNGG | 2 cut(s) | 22, 23 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 83 |
| Bse1I | ACTGG | 2 cut(s) | 168, 209 |
| BseDI | CCNNGG | 2 cut(s) | 22, 23 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 83 |
| BseNI | ACTGG | 2 cut(s) | 168, 209 |
| BseXI | GCAGC | 3 cut(s) | 82, 125, 172 |
| BsgI | GTGCAG | 1 cut(s) | 333 |
| BshFI | GGCC | 1 cut(s) | 12 |
| BsiHKCI | CYCGRG | 1 cut(s) | 22 |
| BsiSI | CCGG | 1 cut(s) | 23 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 83 |
| BsnI | GGCC | 1 cut(s) | 12 |
| BsoBI | CYCGRG | 1 cut(s) | 22 |
| BspACI | CCGC | 2 cut(s) | 128, 188 |
| BspANI | GGCC | 1 cut(s) | 12 |
| BspOI | GCTAGC | 1 cut(s) | 239 |
| BsrI | ACTGG | 2 cut(s) | 168, 209 |
| BssECI | CCNNGG | 2 cut(s) | 22, 23 |
| BstC8I | GCNNGC | 2 cut(s) | 130, 237 |
| BstDEI | CTNAG | 2 cut(s) | 181, 308 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 81 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 18 |
| BstNSI | RCATGY | 1 cut(s) | 43 |
| BstSCI | CCNGG | 2 cut(s) | 21, 22 |
| BstV1I | GCAGC | 3 cut(s) | 82, 125, 172 |
| BsuRI | GGCC | 1 cut(s) | 12 |
| BtsI | GCAGTG | 1 cut(s) | 321 |
| BtsIMutI | CAGTG | 2 cut(s) | 175, 321 |
| Cac8I | GCNNGC | 2 cut(s) | 130, 237 |
| Cfr13I | GGNCC | 1 cut(s) | 10 |
| Cfr9I | CCCGGG | 1 cut(s) | 22 |
| CviAII | CATG | 1 cut(s) | 40 |
| CviJI | RGCY | 7 cut(s) | 12, 73, 91, 132, 185, 239, 322 |
| CviKI_1 | RGCY | 7 cut(s) | 12, 73, 91, 132, 185, 239, 322 |
| DdeI | CTNAG | 2 cut(s) | 181, 308 |
| Eco88I | CYCGRG | 1 cut(s) | 22 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 81 |
| FaeI | CATG | 1 cut(s) | 43 |
| FaiI | YATR | 5 cut(s) | 19, 41, 138, 203, 242 |
| FatI | CATG | 1 cut(s) | 39 |
| FauI | CCCGC | 2 cut(s) | 121, 181 |
| Fnu4HI | GCNGC | 4 cut(s) | 71, 114, 186, 320 |
| Fsp4HI | GCNGC | 4 cut(s) | 71, 114, 186, 320 |
| FspBI | CTAG | 1 cut(s) | 236 |
| GluI | GCNGC | 4 cut(s) | 71, 114, 186, 320 |
| HaeIII | GGCC | 1 cut(s) | 12 |
| HapII | CCGG | 1 cut(s) | 23 |
| Hin1II | CATG | 1 cut(s) | 43 |
| HpaII | CCGG | 1 cut(s) | 23 |
| HphI | GGTGA | 1 cut(s) | 274 |
| Hpy188I | TCNGA | 1 cut(s) | 229 |
| Hpy188III | TCNNGA | 1 cut(s) | 77 |
| HpyAV | CCTTC | 2 cut(s) | 259, 267 |
| HpyCH4V | TGCA | 4 cut(s) | 43, 205, 314, 319 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 18 |
| HpyF3I | CTNAG | 2 cut(s) | 181, 308 |
| Hsp92II | CATG | 1 cut(s) | 43 |
| LpnPI | CCDG | 4 cut(s) | 36, 90, 181, 222 |
| Lsp1109I | GCAGC | 3 cut(s) | 82, 125, 172 |
| LweI | GCATC | 1 cut(s) | 125 |
| MaeI | CTAG | 1 cut(s) | 236 |
| MluCI | AATT | 7 cut(s) | 14, 60, 95, 100, 120, 198, 328 |
| MmeI | TCCRAC | 1 cut(s) | 234 |
| MnlI | CCTC | 4 cut(s) | 46, 77, 84, 283 |
| MseI | TTAA | 5 cut(s) | 35, 98, 123, 327, 331 |
| MspI | CCGG | 1 cut(s) | 23 |
| MspR9I | CCNGG | 2 cut(s) | 23, 24 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 18 |
| NciI | CCSGG | 2 cut(s) | 23, 24 |
| NheI | GCTAGC | 1 cut(s) | 235 |
| NlaIII | CATG | 1 cut(s) | 43 |
| NspI | RCATGY | 1 cut(s) | 43 |
| PacI | TTAATTAA | 1 cut(s) | 331 |
| PkrI | GCNGC | 4 cut(s) | 72, 115, 187, 321 |
| PshBI | ATTAAT | 2 cut(s) | 123, 327 |
| PspPI | GGNCC | 1 cut(s) | 10 |
| SaqAI | TTAA | 5 cut(s) | 35, 98, 123, 327, 331 |
| SatI | GCNGC | 4 cut(s) | 71, 114, 186, 320 |
| Sau96I | GGNCC | 1 cut(s) | 10 |
| ScrFI | CCNGG | 2 cut(s) | 23, 24 |
| SetI | ASST | 7 cut(s) | 57, 93, 187, 241, 278, 294, 324 |
| SfaNI | GCATC | 1 cut(s) | 125 |
| SmaI | CCCGGG | 1 cut(s) | 24 |
| Sse9I | AATT | 7 cut(s) | 14, 60, 95, 100, 120, 198, 328 |
| SsiI | CCGC | 2 cut(s) | 128, 188 |
| SspMI | CTAG | 1 cut(s) | 236 |
| StyD4I | CCNGG | 2 cut(s) | 21, 22 |
| TasI | AATT | 7 cut(s) | 14, 60, 95, 100, 120, 198, 328 |
| Tru1I | TTAA | 5 cut(s) | 35, 98, 123, 327, 331 |
| Tru9I | TTAA | 5 cut(s) | 35, 98, 123, 327, 331 |
| TscAI | CASTG | 2 cut(s) | 175, 321 |
| TseI | GCWGC | 4 cut(s) | 70, 113, 185, 319 |
| TspDTI | ATGAA | 1 cut(s) | 177 |
| TspMI | CCCGGG | 1 cut(s) | 22 |
| TspRI | CASTG | 2 cut(s) | 175, 321 |
| VspI | ATTAAT | 2 cut(s) | 123, 327 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 81 |
| XceI | RCATGY | 1 cut(s) | 43 |
| XmaI | CCCGGG | 1 cut(s) | 22 |
| XspI | CTAG | 1 cut(s) | 236 |