ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 9 - 70 | 1.9e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 181 |
| AgsI | TTSAA | 2 cut(s) | 41, 152 |
| AhlI | ACTAGT | 1 cut(s) | 182 |
| AjnI | CCWGG | 1 cut(s) | 19 |
| AluBI | AGCT | 3 cut(s) | 74, 155, 194 |
| AluI | AGCT | 3 cut(s) | 74, 155, 194 |
| AoxI | GGCC | 1 cut(s) | 109 |
| ApeKI | GCWGC | 1 cut(s) | 194 |
| AspS9I | GGNCC | 1 cut(s) | 110 |
| BbvI | GCAGC | 1 cut(s) | 181 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 35, 69 |
| BciT130I | CCWGG | 1 cut(s) | 21 |
| BcuI | ACTAGT | 1 cut(s) | 182 |
| BfaI | CTAG | 3 cut(s) | 57, 71, 183 |
| BisI | GCNGC | 1 cut(s) | 195 |
| BlsI | GCNGC | 1 cut(s) | 196 |
| Bme1390I | CCNGG | 1 cut(s) | 21 |
| BmgT120I | GGNCC | 1 cut(s) | 110 |
| BmrFI | CCNGG | 1 cut(s) | 21 |
| BmsI | GCATC | 2 cut(s) | 25, 43 |
| BpuEI | CTTGAG | 1 cut(s) | 199 |
| Bse1I | ACTGG | 1 cut(s) | 9 |
| BseBI | CCWGG | 1 cut(s) | 21 |
| BseGI | GGATG | 1 cut(s) | 16 |
| BseNI | ACTGG | 1 cut(s) | 9 |
| BseXI | GCAGC | 1 cut(s) | 181 |
| BshFI | GGCC | 1 cut(s) | 111 |
| BsnI | GGCC | 1 cut(s) | 111 |
| Bsp143I | GATC | 1 cut(s) | 94 |
| BspANI | GGCC | 1 cut(s) | 111 |
| BsrI | ACTGG | 1 cut(s) | 9 |
| BssMI | GATC | 1 cut(s) | 94 |
| Bst2UI | CCWGG | 1 cut(s) | 21 |
| Bst4CI | ACNGT | 1 cut(s) | 134 |
| BstDEI | CTNAG | 1 cut(s) | 98 |
| BstF5I | GGATG | 1 cut(s) | 16 |
| BstKTI | GATC | 1 cut(s) | 97 |
| BstMBI | GATC | 1 cut(s) | 94 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 108, 200, 219 |
| BstNI | CCWGG | 1 cut(s) | 21 |
| BstNSI | RCATGY | 1 cut(s) | 207 |
| BstSCI | CCNGG | 1 cut(s) | 19 |
| BstV1I | GCAGC | 1 cut(s) | 181 |
| BsuRI | GGCC | 1 cut(s) | 111 |
| BtsCI | GGATG | 1 cut(s) | 16 |
| BtsIMutI | CAGTG | 1 cut(s) | 222 |
| Cfr13I | GGNCC | 1 cut(s) | 110 |
| Csp6I | GTAC | 1 cut(s) | 180 |
| CviAII | CATG | 4 cut(s) | 86, 103, 200, 204 |
| CviJI | RGCY | 6 cut(s) | 74, 84, 111, 155, 194, 213 |
| CviKI_1 | RGCY | 6 cut(s) | 74, 84, 111, 155, 194, 213 |
| CviQI | GTAC | 1 cut(s) | 180 |
| DdeI | CTNAG | 1 cut(s) | 98 |
| DpnI | GATC | 1 cut(s) | 96 |
| DpnII | GATC | 1 cut(s) | 94 |
| EcoO109I | RGGNCCY | 1 cut(s) | 110 |
| EcoRII | CCWGG | 1 cut(s) | 19 |
| EcoT22I | ATGCAT | 1 cut(s) | 205 |
| FaeI | CATG | 4 cut(s) | 89, 106, 203, 207 |
| FaiI | YATR | 5 cut(s) | 87, 104, 137, 201, 205 |
| FatI | CATG | 4 cut(s) | 85, 102, 199, 203 |
| Fnu4HI | GCNGC | 1 cut(s) | 195 |
| FokI | GGATG | 1 cut(s) | 3 |
| Fsp4HI | GCNGC | 1 cut(s) | 195 |
| FspBI | CTAG | 3 cut(s) | 57, 71, 183 |
| GluI | GCNGC | 1 cut(s) | 195 |
| HaeIII | GGCC | 1 cut(s) | 111 |
| Hin1II | CATG | 4 cut(s) | 89, 106, 203, 207 |
| Hpy188III | TCNNGA | 2 cut(s) | 46, 216 |
| HpyAV | CCTTC | 3 cut(s) | 27, 101, 221 |
| HpyCH4III | ACNGT | 1 cut(s) | 134 |
| HpyCH4V | TGCA | 1 cut(s) | 203 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 108, 200, 219 |
| HpyF3I | CTNAG | 1 cut(s) | 98 |
| Hsp92II | CATG | 4 cut(s) | 89, 106, 203, 207 |
| Kzo9I | GATC | 1 cut(s) | 94 |
| LpnPI | CCDG | 3 cut(s) | 6, 22, 33 |
| Lsp1109I | GCAGC | 1 cut(s) | 181 |
| LweI | GCATC | 2 cut(s) | 25, 43 |
| MaeI | CTAG | 3 cut(s) | 57, 71, 183 |
| MalI | GATC | 1 cut(s) | 96 |
| MboI | GATC | 1 cut(s) | 94 |
| MboII | GAAGA | 1 cut(s) | 178 |
| MmeI | TCCRAC | 1 cut(s) | 143 |
| MnlI | CCTC | 3 cut(s) | 17, 132, 186 |
| Mph1103I | ATGCAT | 1 cut(s) | 205 |
| MslI | CAYNNNNRTG | 1 cut(s) | 204 |
| MspR9I | CCNGG | 1 cut(s) | 21 |
| MvaI | CCWGG | 1 cut(s) | 21 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 108, 200, 219 |
| NdeII | GATC | 1 cut(s) | 94 |
| NlaIII | CATG | 4 cut(s) | 89, 106, 203, 207 |
| NsiI | ATGCAT | 1 cut(s) | 205 |
| NspI | RCATGY | 1 cut(s) | 207 |
| PfoI | TCCNGGA | 1 cut(s) | 19 |
| PkrI | GCNGC | 1 cut(s) | 196 |
| Psp6I | CCWGG | 1 cut(s) | 19 |
| PspGI | CCWGG | 1 cut(s) | 19 |
| PspPI | GGNCC | 1 cut(s) | 110 |
| RsaI | GTAC | 1 cut(s) | 181 |
| RsaNI | GTAC | 1 cut(s) | 180 |
| RseI | CAYNNNNRTG | 1 cut(s) | 204 |
| SatI | GCNGC | 1 cut(s) | 195 |
| Sau3AI | GATC | 1 cut(s) | 94 |
| Sau96I | GGNCC | 1 cut(s) | 110 |
| ScrFI | CCNGG | 1 cut(s) | 21 |
| SetI | ASST | 3 cut(s) | 76, 157, 196 |
| SfaNI | GCATC | 2 cut(s) | 25, 43 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 204 |
| SmlI | CTYRAG | 1 cut(s) | 214 |
| SmoI | CTYRAG | 1 cut(s) | 214 |
| SpeI | ACTAGT | 1 cut(s) | 182 |
| SspI | AATATT | 1 cut(s) | 64 |
| SspMI | CTAG | 3 cut(s) | 57, 71, 183 |
| StyD4I | CCNGG | 1 cut(s) | 19 |
| TaaI | ACNGT | 1 cut(s) | 134 |
| TaqI | TCGA | 2 cut(s) | 45, 190 |
| TscAI | CASTG | 1 cut(s) | 229 |
| TseI | GCWGC | 1 cut(s) | 194 |
| TspDTI | ATGAA | 2 cut(s) | 102, 138 |
| TspRI | CASTG | 1 cut(s) | 229 |
| XceI | RCATGY | 1 cut(s) | 207 |
| XspI | CTAG | 3 cut(s) | 57, 71, 183 |
| Zsp2I | ATGCAT | 1 cut(s) | 205 |