ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Root_cap | PF06830 | 291 - 347 | 1.9e-29 | Root cap |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 788 |
| Acc36I | ACCTGC | 1 cut(s) | 1026 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 674 |
| AccII | CGCG | 1 cut(s) | 531 |
| AccIII | TCCGGA | 1 cut(s) | 197 |
| AciI | CCGC | 2 cut(s) | 324, 981 |
| AclWI | GGATC | 2 cut(s) | 389, 701 |
| AcoI | YGGCCR | 1 cut(s) | 699 |
| AfaI | GTAC | 1 cut(s) | 995 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 674, 690, 977 |
| AgsI | TTSAA | 2 cut(s) | 548, 725 |
| AjnI | CCWGG | 1 cut(s) | 931 |
| Alw21I | GWGCWC | 1 cut(s) | 51 |
| Alw26I | GTCTC | 2 cut(s) | 607, 860 |
| AlwI | GGATC | 2 cut(s) | 389, 701 |
| Aor13HI | TCCGGA | 1 cut(s) | 197 |
| AoxI | GGCC | 4 cut(s) | 33, 82, 699, 794 |
| ApeKI | GCWGC | 1 cut(s) | 590 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 324, 356 |
| AspS9I | GGNCC | 2 cut(s) | 34, 82 |
| AsuHPI | GGTGA | 4 cut(s) | 177, 425, 662, 1008 |
| Bbv12I | GWGCWC | 1 cut(s) | 51 |
| BbvI | GCAGC | 1 cut(s) | 602 |
| BccI | CCATC | 8 cut(s) | 268, 410, 641, 668, 772, 847, 970, 1012 |
| BceAI | ACGGC | 2 cut(s) | 121, 154 |
| BciT130I | CCWGG | 1 cut(s) | 933 |
| BcoDI | GTCTC | 2 cut(s) | 607, 860 |
| BfaI | CTAG | 1 cut(s) | 518 |
| BfuAI | ACCTGC | 1 cut(s) | 1026 |
| BisI | GCNGC | 2 cut(s) | 325, 591 |
| BlsI | GCNGC | 2 cut(s) | 326, 592 |
| Bme1390I | CCNGG | 1 cut(s) | 933 |
| BmgT120I | GGNCC | 2 cut(s) | 34, 82 |
| BmiI | GGNNCC | 2 cut(s) | 442, 1040 |
| BmrFI | CCNGG | 1 cut(s) | 933 |
| BmsI | GCATC | 3 cut(s) | 203, 672, 957 |
| BoxI | GACNNNNGTC | 1 cut(s) | 251 |
| BsaAI | YACGTR | 1 cut(s) | 748 |
| BsaJI | CCNNGG | 4 cut(s) | 57, 85, 398, 436 |
| BsaWI | WCCGGW | 1 cut(s) | 197 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 674, 690, 977 |
| Bse1I | ACTGG | 1 cut(s) | 947 |
| Bse3DI | GCAATG | 5 cut(s) | 97, 115, 121, 148, 172 |
| BseAI | TCCGGA | 1 cut(s) | 197 |
| BseBI | CCWGG | 1 cut(s) | 933 |
| BseDI | CCNNGG | 4 cut(s) | 57, 85, 398, 436 |
| BseGI | GGATG | 4 cut(s) | 194, 619, 652, 663 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 674, 690, 977 |
| BseMI | GCAATG | 5 cut(s) | 97, 115, 121, 148, 172 |
| BseMII | CTCAG | 1 cut(s) | 287 |
| BseNI | ACTGG | 1 cut(s) | 947 |
| BseXI | GCAGC | 1 cut(s) | 602 |
| Bsh1236I | CGCG | 1 cut(s) | 531 |
| BshFI | GGCC | 4 cut(s) | 35, 84, 701, 796 |
| BsiHKAI | GWGCWC | 1 cut(s) | 51 |
| BsiSI | CCGG | 1 cut(s) | 198 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 674, 690, 977 |
| BsmAI | GTCTC | 2 cut(s) | 607, 860 |
| BsmI | GAATGC | 2 cut(s) | 235, 272 |
| BsnI | GGCC | 4 cut(s) | 35, 84, 701, 796 |
| Bsp1286I | GDGCHC | 1 cut(s) | 51 |
| Bsp13I | TCCGGA | 1 cut(s) | 197 |
| Bsp143I | GATC | 3 cut(s) | 394, 693, 895 |
| Bsp19I | CCATGG | 2 cut(s) | 57, 436 |
| Bsp68I | TCGCGA | 1 cut(s) | 531 |
| BspACI | CCGC | 2 cut(s) | 324, 981 |
| BspANI | GGCC | 4 cut(s) | 35, 84, 701, 796 |
| BspCNI | CTCAG | 1 cut(s) | 286 |
| BspEI | TCCGGA | 1 cut(s) | 197 |
| BspFNI | CGCG | 1 cut(s) | 531 |
| BspLI | GGNNCC | 2 cut(s) | 442, 1040 |
| BspMI | ACCTGC | 1 cut(s) | 1026 |
| BspPI | GGATC | 2 cut(s) | 389, 701 |
| BsrDI | GCAATG | 5 cut(s) | 97, 115, 121, 148, 172 |
| BsrI | ACTGG | 1 cut(s) | 947 |
| BssECI | CCNNGG | 4 cut(s) | 57, 85, 398, 436 |
| BssMI | GATC | 3 cut(s) | 394, 693, 895 |
| BssT1I | CCWWGG | 4 cut(s) | 57, 85, 398, 436 |
| Bst2UI | CCWGG | 1 cut(s) | 933 |
| Bst4CI | ACNGT | 3 cut(s) | 134, 189, 760 |
| Bst6I | CTCTTC | 1 cut(s) | 703 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 230, 1032 |
| BstBAI | YACGTR | 1 cut(s) | 748 |
| BstC8I | GCNNGC | 1 cut(s) | 235 |
| BstDEI | CTNAG | 2 cut(s) | 273, 862 |
| BstDSI | CCRYGG | 2 cut(s) | 57, 436 |
| BstF5I | GGATG | 4 cut(s) | 194, 619, 652, 663 |
| BstFNI | CGCG | 1 cut(s) | 531 |
| BstKTI | GATC | 3 cut(s) | 397, 696, 898 |
| BstMAI | GTCTC | 2 cut(s) | 607, 860 |
| BstMBI | GATC | 3 cut(s) | 394, 693, 895 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 126, 230, 1032 |
| BstNI | CCWGG | 1 cut(s) | 933 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 251 |
| BstSCI | CCNGG | 1 cut(s) | 931 |
| BstSNI | TACGTA | 1 cut(s) | 748 |
| BstUI | CGCG | 1 cut(s) | 531 |
| BstV1I | GCAGC | 1 cut(s) | 602 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 92 |
| BsuRI | GGCC | 4 cut(s) | 35, 84, 701, 796 |
| BtgI | CCRYGG | 2 cut(s) | 57, 436 |
| BtsCI | GGATG | 4 cut(s) | 194, 619, 652, 663 |
| BtsI | GCAGTG | 1 cut(s) | 72 |
| BtsIMutI | CAGTG | 1 cut(s) | 72 |
| BtuMI | TCGCGA | 1 cut(s) | 531 |
| BveI | ACCTGC | 1 cut(s) | 1026 |
| Cac8I | GCNNGC | 1 cut(s) | 235 |
| Cfr13I | GGNCC | 2 cut(s) | 34, 82 |
| CseI | GACGC | 1 cut(s) | 635 |
| Csp6I | GTAC | 1 cut(s) | 994 |
| CviAII | CATG | 6 cut(s) | 58, 437, 540, 562, 634, 697 |
| CviQI | GTAC | 1 cut(s) | 994 |
| DdeI | CTNAG | 2 cut(s) | 273, 862 |
| DpnI | GATC | 3 cut(s) | 396, 695, 897 |
| DpnII | GATC | 3 cut(s) | 394, 693, 895 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 788 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 788 |
| EaeI | YGGCCR | 1 cut(s) | 699 |
| Eam1104I | CTCTTC | 1 cut(s) | 703 |
| EarI | CTCTTC | 1 cut(s) | 703 |
| EciI | GGCGGA | 1 cut(s) | 996 |
| Eco105I | TACGTA | 1 cut(s) | 748 |
| Eco130I | CCWWGG | 4 cut(s) | 57, 85, 398, 436 |
| Eco147I | AGGCCT | 1 cut(s) | 796 |
| EcoRII | CCWGG | 1 cut(s) | 931 |
| EcoT14I | CCWWGG | 4 cut(s) | 57, 85, 398, 436 |
| ErhI | CCWWGG | 4 cut(s) | 57, 85, 398, 436 |
| FaeI | CATG | 6 cut(s) | 61, 440, 543, 565, 637, 700 |
| FatI | CATG | 6 cut(s) | 57, 436, 539, 561, 633, 696 |
| Fnu4HI | GCNGC | 2 cut(s) | 325, 591 |
| FokI | GGATG | 4 cut(s) | 181, 626, 650, 659 |
| Fsp4HI | GCNGC | 2 cut(s) | 325, 591 |
| FspBI | CTAG | 1 cut(s) | 518 |
| GluI | GCNGC | 2 cut(s) | 325, 591 |
| HaeIII | GGCC | 4 cut(s) | 35, 84, 701, 796 |
| HapII | CCGG | 1 cut(s) | 198 |
| HgaI | GACGC | 1 cut(s) | 635 |
| Hin1II | CATG | 6 cut(s) | 61, 440, 543, 565, 637, 700 |
| HincII | GTYRAC | 1 cut(s) | 625 |
| HindII | GTYRAC | 1 cut(s) | 625 |
| HinfI | GANTC | 4 cut(s) | 526, 600, 653, 789 |
| HpaII | CCGG | 1 cut(s) | 198 |
| HphI | GGTGA | 4 cut(s) | 177, 425, 662, 1008 |
| Hpy166II | GTNNAC | 2 cut(s) | 625, 823 |
| Hpy188I | TCNGA | 6 cut(s) | 265, 276, 472, 844, 895, 966 |
| Hpy188III | TCNNGA | 3 cut(s) | 198, 530, 1053 |
| Hpy8I | GTNNAC | 2 cut(s) | 625, 823 |
| HpyAV | CCTTC | 3 cut(s) | 516, 698, 899 |
| HpyCH4III | ACNGT | 3 cut(s) | 134, 189, 760 |
| HpyCH4IV | ACGT | 1 cut(s) | 747 |
| HpyCH4V | TGCA | 5 cut(s) | 348, 494, 590, 1026, 1035 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 126, 230, 1032 |
| HpyF3I | CTNAG | 2 cut(s) | 273, 862 |
| HpySE526I | ACGT | 1 cut(s) | 747 |
| Hsp92II | CATG | 6 cut(s) | 61, 440, 543, 565, 637, 700 |
| Kpn2I | TCCGGA | 1 cut(s) | 197 |
| Kzo9I | GATC | 3 cut(s) | 394, 693, 895 |
| LmnI | GCTCC | 2 cut(s) | 440, 803 |
| Lsp1109I | GCAGC | 1 cut(s) | 602 |
| LweI | GCATC | 3 cut(s) | 203, 672, 957 |
| MaeI | CTAG | 1 cut(s) | 518 |
| MaeII | ACGT | 1 cut(s) | 747 |
| MaeIII | GTNAC | 5 cut(s) | 18, 134, 183, 340, 754 |
| MalI | GATC | 3 cut(s) | 396, 695, 897 |
| MboI | GATC | 3 cut(s) | 394, 693, 895 |
| MboII | GAAGA | 3 cut(s) | 301, 720, 821 |
| MhlI | GDGCHC | 1 cut(s) | 51 |
| MluCI | AATT | 3 cut(s) | 179, 585, 872 |
| MlyI | GAGTC | 4 cut(s) | 520, 609, 662, 798 |
| MmeI | TCCRAC | 2 cut(s) | 909, 937 |
| MroI | TCCGGA | 1 cut(s) | 197 |
| MseI | TTAA | 1 cut(s) | 951 |
| MslI | CAYNNNNRTG | 1 cut(s) | 265 |
| MspI | CCGG | 1 cut(s) | 198 |
| MspR9I | CCNGG | 1 cut(s) | 933 |
| Mva1269I | GAATGC | 2 cut(s) | 235, 272 |
| MvaI | CCWGG | 1 cut(s) | 933 |
| MvnI | CGCG | 1 cut(s) | 531 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 126, 230, 1032 |
| NcoI | CCATGG | 2 cut(s) | 57, 436 |
| NdeII | GATC | 3 cut(s) | 394, 693, 895 |
| NlaIII | CATG | 6 cut(s) | 61, 440, 543, 565, 637, 700 |
| NlaIV | GGNNCC | 2 cut(s) | 442, 1040 |
| NmuCI | GTSAC | 3 cut(s) | 18, 183, 340 |
| NruI | TCGCGA | 1 cut(s) | 531 |
| PceI | AGGCCT | 1 cut(s) | 796 |
| PctI | GAATGC | 2 cut(s) | 235, 272 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 674 |
| PkrI | GCNGC | 2 cut(s) | 326, 592 |
| PleI | GAGTC | 4 cut(s) | 520, 608, 661, 797 |
| PpsI | GAGTC | 4 cut(s) | 520, 608, 661, 797 |
| Ppu21I | YACGTR | 1 cut(s) | 748 |
| PshAI | GACNNNNGTC | 1 cut(s) | 251 |
| Psp6I | CCWGG | 1 cut(s) | 931 |
| PspGI | CCWGG | 1 cut(s) | 931 |
| PspN4I | GGNNCC | 2 cut(s) | 442, 1040 |
| PspPI | GGNCC | 2 cut(s) | 34, 82 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 284, 316 |
| RruI | TCGCGA | 1 cut(s) | 531 |
| RsaI | GTAC | 1 cut(s) | 995 |
| RsaNI | GTAC | 1 cut(s) | 994 |
| RseI | CAYNNNNRTG | 1 cut(s) | 265 |
| SaqAI | TTAA | 1 cut(s) | 951 |
| SatI | GCNGC | 2 cut(s) | 325, 591 |
| Sau3AI | GATC | 3 cut(s) | 394, 693, 895 |
| Sau96I | GGNCC | 2 cut(s) | 34, 82 |
| SchI | GAGTC | 4 cut(s) | 520, 609, 662, 798 |
| ScrFI | CCNGG | 1 cut(s) | 933 |
| SduI | GDGCHC | 1 cut(s) | 51 |
| SfaNI | GCATC | 3 cut(s) | 203, 672, 957 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 265 |
| SnaBI | TACGTA | 1 cut(s) | 748 |
| Sse9I | AATT | 3 cut(s) | 179, 585, 872 |
| SseBI | AGGCCT | 1 cut(s) | 796 |
| SsiI | CCGC | 2 cut(s) | 324, 981 |
| SspMI | CTAG | 1 cut(s) | 518 |
| StuI | AGGCCT | 1 cut(s) | 796 |
| StyD4I | CCNGG | 1 cut(s) | 931 |
| StyI | CCWWGG | 4 cut(s) | 57, 85, 398, 436 |
| TaaI | ACNGT | 3 cut(s) | 134, 189, 760 |
| TaiI | ACGT | 1 cut(s) | 750 |
| TaqI | TCGA | 1 cut(s) | 511 |
| TasI | AATT | 3 cut(s) | 179, 585, 872 |
| TauI | GCSGC | 1 cut(s) | 327 |
| Tru1I | TTAA | 1 cut(s) | 951 |
| Tru9I | TTAA | 1 cut(s) | 951 |
| TscAI | CASTG | 1 cut(s) | 72 |
| TseFI | GTSAC | 3 cut(s) | 18, 183, 340 |
| TseI | GCWGC | 1 cut(s) | 590 |
| Tsp45I | GTSAC | 3 cut(s) | 18, 183, 340 |
| TspDTI | ATGAA | 3 cut(s) | 192, 304, 490 |
| TspGWI | ACGGA | 1 cut(s) | 646 |
| TspRI | CASTG | 1 cut(s) | 72 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 674 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1049 |
| XspI | CTAG | 1 cut(s) | 518 |