ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 121 |
| AciI | CCGC | 3 cut(s) | 48, 212, 404 |
| AcyI | GRCGYC | 1 cut(s) | 429 |
| AfaI | GTAC | 1 cut(s) | 825 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 511 |
| AgsI | TTSAA | 6 cut(s) | 127, 174, 470, 477, 712, 781 |
| AluBI | AGCT | 2 cut(s) | 248, 830 |
| AluI | AGCT | 2 cut(s) | 248, 830 |
| Alw21I | GWGCWC | 1 cut(s) | 702 |
| Alw26I | GTCTC | 1 cut(s) | 332 |
| AoxI | GGCC | 1 cut(s) | 851 |
| ApeKI | GCWGC | 1 cut(s) | 608 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 776 |
| AspS9I | GGNCC | 2 cut(s) | 214, 851 |
| AsuHPI | GGTGA | 1 cut(s) | 695 |
| AvaII | GGWCC | 1 cut(s) | 214 |
| BbsI | GAAGAC | 1 cut(s) | 398 |
| Bbv12I | GWGCWC | 1 cut(s) | 702 |
| BbvI | GCAGC | 1 cut(s) | 620 |
| BccI | CCATC | 2 cut(s) | 74, 717 |
| BcoDI | GTCTC | 1 cut(s) | 332 |
| BfaI | CTAG | 1 cut(s) | 209 |
| BfmI | CTRYAG | 1 cut(s) | 603 |
| BfuAI | ACCTGC | 1 cut(s) | 121 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 859 |
| BisI | GCNGC | 1 cut(s) | 609 |
| BlsI | GCNGC | 1 cut(s) | 610 |
| Bme18I | GGWCC | 1 cut(s) | 214 |
| BmgT120I | GGNCC | 2 cut(s) | 214, 851 |
| BmiI | GGNNCC | 2 cut(s) | 216, 863 |
| BmsI | GCATC | 2 cut(s) | 391, 676 |
| BpiI | GAAGAC | 1 cut(s) | 398 |
| BsaHI | GRCGYC | 1 cut(s) | 429 |
| BsaJI | CCNNGG | 2 cut(s) | 505, 857 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 511 |
| Bse1I | ACTGG | 2 cut(s) | 489, 587 |
| Bse3DI | GCAATG | 2 cut(s) | 349, 576 |
| BseDI | CCNNGG | 2 cut(s) | 505, 857 |
| BseGI | GGATG | 3 cut(s) | 58, 521, 728 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 511 |
| BseMI | GCAATG | 2 cut(s) | 349, 576 |
| BseNI | ACTGG | 2 cut(s) | 489, 587 |
| BseRI | GAGGAG | 1 cut(s) | 759 |
| BseXI | GCAGC | 1 cut(s) | 620 |
| BseYI | CCCAGC | 1 cut(s) | 526 |
| BshFI | GGCC | 1 cut(s) | 853 |
| BsiHKAI | GWGCWC | 1 cut(s) | 702 |
| BsiSI | CCGG | 1 cut(s) | 432 |
| BslFI | GGGAC | 1 cut(s) | 200 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 511 |
| BsmAI | GTCTC | 1 cut(s) | 332 |
| BsmFI | GGGAC | 1 cut(s) | 200 |
| BsmI | GAATGC | 1 cut(s) | 718 |
| BsnI | GGCC | 1 cut(s) | 853 |
| Bsp1286I | GDGCHC | 1 cut(s) | 702 |
| Bsp143I | GATC | 1 cut(s) | 806 |
| Bsp19I | CCATGG | 1 cut(s) | 857 |
| BspACI | CCGC | 3 cut(s) | 48, 212, 404 |
| BspANI | GGCC | 1 cut(s) | 853 |
| BspHI | TCATGA | 1 cut(s) | 304 |
| BspLI | GGNNCC | 2 cut(s) | 216, 863 |
| BspMI | ACCTGC | 1 cut(s) | 121 |
| BspQI | GCTCTTC | 1 cut(s) | 322 |
| BsrDI | GCAATG | 2 cut(s) | 349, 576 |
| BsrI | ACTGG | 2 cut(s) | 489, 587 |
| BssECI | CCNNGG | 2 cut(s) | 505, 857 |
| BssMI | GATC | 1 cut(s) | 806 |
| BssNI | GRCGYC | 1 cut(s) | 429 |
| BssT1I | CCWWGG | 2 cut(s) | 505, 857 |
| Bst4CI | ACNGT | 2 cut(s) | 94, 343 |
| Bst6I | CTCTTC | 1 cut(s) | 322 |
| BstACI | GRCGYC | 1 cut(s) | 429 |
| BstC8I | GCNNGC | 1 cut(s) | 250 |
| BstDEI | CTNAG | 2 cut(s) | 759, 784 |
| BstDSI | CCRYGG | 1 cut(s) | 857 |
| BstF5I | GGATG | 3 cut(s) | 58, 521, 728 |
| BstKTI | GATC | 1 cut(s) | 809 |
| BstMAI | GTCTC | 1 cut(s) | 332 |
| BstMBI | GATC | 1 cut(s) | 806 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 614, 859 |
| BstNSI | RCATGY | 2 cut(s) | 635, 767 |
| BstSFI | CTRYAG | 1 cut(s) | 603 |
| BstV1I | GCAGC | 1 cut(s) | 620 |
| BstV2I | GAAGAC | 1 cut(s) | 398 |
| BsuRI | GGCC | 1 cut(s) | 853 |
| BtgI | CCRYGG | 1 cut(s) | 857 |
| BtsCI | GGATG | 3 cut(s) | 58, 521, 728 |
| BtsIMutI | CAGTG | 1 cut(s) | 99 |
| BveI | ACCTGC | 1 cut(s) | 121 |
| Cac8I | GCNNGC | 1 cut(s) | 250 |
| CciI | TCATGA | 1 cut(s) | 304 |
| Cfr13I | GGNCC | 2 cut(s) | 214, 851 |
| CseI | GACGC | 1 cut(s) | 437 |
| Csp6I | GTAC | 1 cut(s) | 824 |
| CviAII | CATG | 6 cut(s) | 305, 410, 632, 764, 858, 866 |
| CviQI | GTAC | 1 cut(s) | 824 |
| DdeI | CTNAG | 2 cut(s) | 759, 784 |
| DpnI | GATC | 1 cut(s) | 808 |
| DpnII | GATC | 1 cut(s) | 806 |
| DraI | TTTAAA | 1 cut(s) | 286 |
| Eam1104I | CTCTTC | 1 cut(s) | 322 |
| EarI | CTCTTC | 1 cut(s) | 322 |
| Eco130I | CCWWGG | 2 cut(s) | 505, 857 |
| Eco47I | GGWCC | 1 cut(s) | 214 |
| EcoO109I | RGGNCCY | 1 cut(s) | 851 |
| EcoT14I | CCWWGG | 2 cut(s) | 505, 857 |
| ErhI | CCWWGG | 2 cut(s) | 505, 857 |
| FaeI | CATG | 6 cut(s) | 308, 413, 635, 767, 861, 869 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 221, 253, 761, 793 |
| FaqI | GGGAC | 1 cut(s) | 200 |
| FatI | CATG | 6 cut(s) | 304, 409, 631, 763, 857, 865 |
| FauI | CCCGC | 1 cut(s) | 41 |
| Fnu4HI | GCNGC | 1 cut(s) | 609 |
| FokI | GGATG | 3 cut(s) | 65, 528, 735 |
| Fsp4HI | GCNGC | 1 cut(s) | 609 |
| FspBI | CTAG | 1 cut(s) | 209 |
| GluI | GCNGC | 1 cut(s) | 609 |
| GsaI | CCCAGC | 1 cut(s) | 530 |
| HaeIII | GGCC | 1 cut(s) | 853 |
| HapII | CCGG | 1 cut(s) | 432 |
| HgaI | GACGC | 1 cut(s) | 437 |
| Hin1I | GRCGYC | 1 cut(s) | 429 |
| Hin1II | CATG | 6 cut(s) | 308, 413, 635, 767, 861, 869 |
| HinfI | GANTC | 1 cut(s) | 170 |
| HpaII | CCGG | 1 cut(s) | 432 |
| HphI | GGTGA | 1 cut(s) | 695 |
| Hpy166II | GTNNAC | 1 cut(s) | 16 |
| Hpy188I | TCNGA | 1 cut(s) | 421 |
| Hpy188III | TCNNGA | 2 cut(s) | 305, 720 |
| Hpy8I | GTNNAC | 1 cut(s) | 16 |
| HpyAV | CCTTC | 1 cut(s) | 272 |
| HpyCH4III | ACNGT | 2 cut(s) | 94, 343 |
| HpyCH4V | TGCA | 3 cut(s) | 445, 484, 689 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 614, 859 |
| HpyF3I | CTNAG | 2 cut(s) | 759, 784 |
| Hsp92I | GRCGYC | 1 cut(s) | 429 |
| Hsp92II | CATG | 6 cut(s) | 308, 413, 635, 767, 861, 869 |
| Kzo9I | GATC | 1 cut(s) | 806 |
| LguI | GCTCTTC | 1 cut(s) | 322 |
| LmnI | GCTCC | 1 cut(s) | 867 |
| LpnPI | CCDG | 8 cut(s) | 20, 87, 116, 445, 502, 512, 600, 705 |
| Lsp1109I | GCAGC | 1 cut(s) | 620 |
| LweI | GCATC | 2 cut(s) | 391, 676 |
| MaeI | CTAG | 1 cut(s) | 209 |
| MaeIII | GTNAC | 1 cut(s) | 496 |
| MalI | GATC | 1 cut(s) | 808 |
| MboI | GATC | 1 cut(s) | 806 |
| MboII | GAAGA | 5 cut(s) | 89, 339, 400, 403, 781 |
| MhlI | GDGCHC | 1 cut(s) | 702 |
| MluCI | AATT | 6 cut(s) | 60, 438, 464, 653, 797, 873 |
| MmeI | TCCRAC | 1 cut(s) | 405 |
| MnlI | CCTC | 4 cut(s) | 503, 607, 737, 864 |
| MroXI | GAANNNNTTC | 1 cut(s) | 776 |
| MseI | TTAA | 6 cut(s) | 285, 542, 560, 597, 693, 872 |
| MspI | CCGG | 1 cut(s) | 432 |
| MssI | GTTTAAAC | 1 cut(s) | 286 |
| Mva1269I | GAATGC | 1 cut(s) | 718 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 614, 859 |
| NcoI | CCATGG | 1 cut(s) | 857 |
| NdeII | GATC | 1 cut(s) | 806 |
| NlaIII | CATG | 6 cut(s) | 308, 413, 635, 767, 861, 869 |
| NlaIV | GGNNCC | 2 cut(s) | 216, 863 |
| NspI | RCATGY | 2 cut(s) | 635, 767 |
| PagI | TCATGA | 1 cut(s) | 304 |
| PciSI | GCTCTTC | 1 cut(s) | 322 |
| PctI | GAATGC | 1 cut(s) | 718 |
| PdmI | GAANNNNTTC | 1 cut(s) | 776 |
| PfeI | GAWTC | 1 cut(s) | 170 |
| PkrI | GCNGC | 1 cut(s) | 610 |
| PmeI | GTTTAAAC | 1 cut(s) | 286 |
| PspFI | CCCAGC | 1 cut(s) | 526 |
| PspN4I | GGNNCC | 2 cut(s) | 216, 863 |
| PspPI | GGNCC | 2 cut(s) | 214, 851 |
| RsaI | GTAC | 1 cut(s) | 825 |
| RsaNI | GTAC | 1 cut(s) | 824 |
| SapI | GCTCTTC | 1 cut(s) | 322 |
| SaqAI | TTAA | 6 cut(s) | 285, 542, 560, 597, 693, 872 |
| SatI | GCNGC | 1 cut(s) | 609 |
| Sau3AI | GATC | 1 cut(s) | 806 |
| Sau96I | GGNCC | 2 cut(s) | 214, 851 |
| SduI | GDGCHC | 1 cut(s) | 702 |
| SetI | ASST | 7 cut(s) | 135, 139, 250, 384, 556, 604, 832 |
| SfaNI | GCATC | 2 cut(s) | 391, 676 |
| SfcI | CTRYAG | 1 cut(s) | 603 |
| SinI | GGWCC | 1 cut(s) | 214 |
| Sse9I | AATT | 6 cut(s) | 60, 438, 464, 653, 797, 873 |
| SsiI | CCGC | 3 cut(s) | 48, 212, 404 |
| SspMI | CTAG | 1 cut(s) | 209 |
| StyI | CCWWGG | 2 cut(s) | 505, 857 |
| TaaI | ACNGT | 2 cut(s) | 94, 343 |
| TasI | AATT | 6 cut(s) | 60, 438, 464, 653, 797, 873 |
| TatI | WGTACW | 1 cut(s) | 823 |
| TfiI | GAWTC | 1 cut(s) | 170 |
| Tru1I | TTAA | 6 cut(s) | 285, 542, 560, 597, 693, 872 |
| Tru9I | TTAA | 6 cut(s) | 285, 542, 560, 597, 693, 872 |
| TscAI | CASTG | 1 cut(s) | 99 |
| TseI | GCWGC | 1 cut(s) | 608 |
| TspDTI | ATGAA | 1 cut(s) | 398 |
| TspRI | CASTG | 1 cut(s) | 99 |
| VpaK11BI | GGWCC | 1 cut(s) | 214 |
| XceI | RCATGY | 2 cut(s) | 635, 767 |
| XmnI | GAANNNNTTC | 1 cut(s) | 776 |
| XspI | CTAG | 1 cut(s) | 209 |