Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 135 - 230 | 5.4e-16 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 601 |
| Acc16I | TGCGCA | 1 cut(s) | 609 |
| Acc36I | ACCTGC | 1 cut(s) | 601 |
| AccI | GTMKAC | 1 cut(s) | 736 |
| AciI | CCGC | 4 cut(s) | 244, 293, 482, 552 |
| AclWI | GGATC | 3 cut(s) | 9, 22, 686 |
| AcsI | RAATTY | 1 cut(s) | 253 |
| AcyI | GRCGYC | 1 cut(s) | 8 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 89, 342 |
| AflIII | ACRYGT | 1 cut(s) | 302 |
| AgsI | TTSAA | 2 cut(s) | 259, 593 |
| AjnI | CCWGG | 1 cut(s) | 17 |
| AluBI | AGCT | 1 cut(s) | 771 |
| AluI | AGCT | 1 cut(s) | 771 |
| Alw21I | GWGCWC | 1 cut(s) | 773 |
| Alw26I | GTCTC | 1 cut(s) | 367 |
| AlwI | GGATC | 3 cut(s) | 9, 22, 686 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 616 |
| ApoI | RAATTY | 1 cut(s) | 253 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 401, 433 |
| AspLEI | GCGC | 2 cut(s) | 446, 610 |
| AspS9I | GGNCC | 1 cut(s) | 262 |
| AsuHPI | GGTGA | 2 cut(s) | 68, 361 |
| AvaII | GGWCC | 1 cut(s) | 262 |
| BamHI | GGATCC | 1 cut(s) | 14 |
| BanII | GRGCYC | 1 cut(s) | 773 |
| BbsI | GAAGAC | 1 cut(s) | 236 |
| Bbv12I | GWGCWC | 1 cut(s) | 773 |
| BccI | CCATC | 4 cut(s) | 47, 194, 653, 668 |
| BceAI | ACGGC | 1 cut(s) | 21 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 198, 232 |
| BciT130I | CCWGG | 1 cut(s) | 19 |
| BcoDI | GTCTC | 1 cut(s) | 367 |
| BfaI | CTAG | 5 cut(s) | 129, 153, 489, 522, 596 |
| BfoI | RGCGCY | 1 cut(s) | 447 |
| BfuAI | ACCTGC | 1 cut(s) | 601 |
| BglII | AGATCT | 1 cut(s) | 534 |
| Bme1390I | CCNGG | 1 cut(s) | 19 |
| Bme18I | GGWCC | 1 cut(s) | 262 |
| BmgT120I | GGNCC | 1 cut(s) | 262 |
| BmiI | GGNNCC | 2 cut(s) | 16, 264 |
| BmrFI | CCNGG | 1 cut(s) | 19 |
| BmsI | GCATC | 3 cut(s) | 218, 595, 609 |
| BpiI | GAAGAC | 1 cut(s) | 236 |
| BpmI | CTGGAG | 1 cut(s) | 200 |
| BsaHI | GRCGYC | 1 cut(s) | 8 |
| BsaI | GGTCTC | 1 cut(s) | 367 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 89, 342 |
| BseBI | CCWGG | 1 cut(s) | 19 |
| BseGI | GGATG | 3 cut(s) | 194, 209, 679 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 89, 342 |
| BseMII | CTCAG | 1 cut(s) | 522 |
| BseRI | GAGGAG | 2 cut(s) | 326, 708 |
| BsiHKAI | GWGCWC | 1 cut(s) | 773 |
| BslFI | GGGAC | 1 cut(s) | 248 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 89, 342 |
| BsmAI | GTCTC | 1 cut(s) | 367 |
| BsmFI | GGGAC | 1 cut(s) | 248 |
| Bso31I | GGTCTC | 1 cut(s) | 367 |
| Bsp1286I | GDGCHC | 1 cut(s) | 773 |
| Bsp143I | GATC | 4 cut(s) | 14, 534, 543, 678 |
| BspACI | CCGC | 4 cut(s) | 244, 293, 482, 552 |
| BspCNI | CTCAG | 1 cut(s) | 523 |
| BspLI | GGNNCC | 2 cut(s) | 16, 264 |
| BspMI | ACCTGC | 1 cut(s) | 601 |
| BspPI | GGATC | 3 cut(s) | 9, 22, 686 |
| BspTNI | GGTCTC | 1 cut(s) | 367 |
| BssMI | GATC | 4 cut(s) | 14, 534, 543, 678 |
| BssNAI | GTATAC | 1 cut(s) | 737 |
| BssNI | GRCGYC | 1 cut(s) | 8 |
| Bst1107I | GTATAC | 1 cut(s) | 737 |
| Bst2UI | CCWGG | 1 cut(s) | 19 |
| Bst4CI | ACNGT | 3 cut(s) | 148, 413, 509 |
| Bst6I | CTCTTC | 1 cut(s) | 316 |
| BstACI | GRCGYC | 1 cut(s) | 8 |
| BstDEI | CTNAG | 1 cut(s) | 531 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 87 |
| BstF5I | GGATG | 3 cut(s) | 194, 209, 679 |
| BstH2I | RGCGCY | 1 cut(s) | 447 |
| BstHHI | GCGC | 2 cut(s) | 446, 610 |
| BstKTI | GATC | 4 cut(s) | 17, 537, 546, 681 |
| BstMAI | GTCTC | 1 cut(s) | 367 |
| BstMBI | GATC | 4 cut(s) | 14, 534, 543, 678 |
| BstNI | CCWGG | 1 cut(s) | 19 |
| BstNSI | RCATGY | 1 cut(s) | 530 |
| BstSCI | CCNGG | 1 cut(s) | 17 |
| BstV2I | GAAGAC | 1 cut(s) | 236 |
| BstX2I | RGATCY | 2 cut(s) | 14, 534 |
| BstYI | RGATCY | 2 cut(s) | 14, 534 |
| BstZ17I | GTATAC | 1 cut(s) | 737 |
| BtsCI | GGATG | 3 cut(s) | 194, 209, 679 |
| BtsI | GCAGTG | 1 cut(s) | 336 |
| BtsIMutI | CAGTG | 1 cut(s) | 336 |
| BveI | ACCTGC | 1 cut(s) | 601 |
| CaiI | CAGNNNCTG | 1 cut(s) | 616 |
| CfoI | GCGC | 2 cut(s) | 446, 610 |
| Cfr13I | GGNCC | 1 cut(s) | 262 |
| CviAII | CATG | 4 cut(s) | 249, 290, 527, 766 |
| CviJI | RGCY | 4 cut(s) | 41, 170, 488, 771 |
| CviKI_1 | RGCY | 4 cut(s) | 41, 170, 488, 771 |
| DdeI | CTNAG | 1 cut(s) | 531 |
| DpnI | GATC | 4 cut(s) | 16, 536, 545, 680 |
| DpnII | GATC | 4 cut(s) | 14, 534, 543, 678 |
| Eam1104I | CTCTTC | 1 cut(s) | 316 |
| EarI | CTCTTC | 1 cut(s) | 316 |
| Ecl136II | GAGCTC | 1 cut(s) | 771 |
| Eco24I | GRGCYC | 1 cut(s) | 773 |
| Eco31I | GGTCTC | 1 cut(s) | 367 |
| Eco47I | GGWCC | 1 cut(s) | 262 |
| Eco53kI | GAGCTC | 1 cut(s) | 771 |
| EcoICRI | GAGCTC | 1 cut(s) | 771 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 87 |
| EcoO109I | RGGNCCY | 1 cut(s) | 262 |
| EcoRII | CCWGG | 1 cut(s) | 17 |
| EcoT22I | ATGCAT | 1 cut(s) | 624 |
| EcoT38I | GRGCYC | 1 cut(s) | 773 |
| FaeI | CATG | 4 cut(s) | 252, 293, 530, 769 |
| FaqI | GGGAC | 1 cut(s) | 248 |
| FatI | CATG | 4 cut(s) | 248, 289, 526, 765 |
| FauI | CCCGC | 1 cut(s) | 545 |
| FblI | GTMKAC | 1 cut(s) | 736 |
| FokI | GGATG | 3 cut(s) | 181, 196, 686 |
| FriOI | GRGCYC | 1 cut(s) | 773 |
| FspBI | CTAG | 5 cut(s) | 129, 153, 489, 522, 596 |
| FspI | TGCGCA | 1 cut(s) | 609 |
| GlaI | GCGC | 2 cut(s) | 445, 609 |
| GsuI | CTGGAG | 1 cut(s) | 200 |
| HaeII | RGCGCY | 1 cut(s) | 447 |
| HhaI | GCGC | 2 cut(s) | 446, 610 |
| Hin1I | GRCGYC | 1 cut(s) | 8 |
| Hin1II | CATG | 4 cut(s) | 252, 293, 530, 769 |
| Hin6I | GCGC | 2 cut(s) | 444, 608 |
| HinP1I | GCGC | 2 cut(s) | 444, 608 |
| HinfI | GANTC | 3 cut(s) | 97, 215, 599 |
| HphI | GGTGA | 2 cut(s) | 68, 361 |
| Hpy166II | GTNNAC | 2 cut(s) | 300, 737 |
| Hpy188I | TCNGA | 4 cut(s) | 199, 214, 604, 683 |
| Hpy188III | TCNNGA | 4 cut(s) | 12, 50, 179, 425 |
| Hpy8I | GTNNAC | 2 cut(s) | 300, 737 |
| Hpy99I | CGWCG | 2 cut(s) | 13, 713 |
| HpyAV | CCTTC | 2 cut(s) | 253, 629 |
| HpyCH4III | ACNGT | 3 cut(s) | 148, 413, 509 |
| HpyCH4IV | ACGT | 2 cut(s) | 304, 711 |
| HpyCH4V | TGCA | 4 cut(s) | 566, 577, 622, 784 |
| HpyF3I | CTNAG | 1 cut(s) | 531 |
| HpySE526I | ACGT | 2 cut(s) | 304, 711 |
| Hsp92I | GRCGYC | 1 cut(s) | 8 |
| Hsp92II | CATG | 4 cut(s) | 252, 293, 530, 769 |
| HspAI | GCGC | 2 cut(s) | 444, 608 |
| Kzo9I | GATC | 4 cut(s) | 14, 534, 543, 678 |
| LmnI | GCTCC | 1 cut(s) | 181 |
| LpnPI | CCDG | 7 cut(s) | 4, 31, 164, 279, 432, 596, 669 |
| LweI | GCATC | 3 cut(s) | 218, 595, 609 |
| MaeI | CTAG | 5 cut(s) | 129, 153, 489, 522, 596 |
| MaeII | ACGT | 2 cut(s) | 304, 711 |
| MaeIII | GTNAC | 2 cut(s) | 511, 555 |
| MalI | GATC | 4 cut(s) | 16, 536, 545, 680 |
| MboI | GATC | 4 cut(s) | 14, 534, 543, 678 |
| MboII | GAAGA | 2 cut(s) | 241, 333 |
| MflI | RGATCY | 2 cut(s) | 14, 534 |
| MhlI | GDGCHC | 1 cut(s) | 773 |
| MluCI | AATT | 4 cut(s) | 43, 69, 253, 273 |
| MlyI | GAGTC | 2 cut(s) | 209, 608 |
| MmeI | TCCRAC | 1 cut(s) | 237 |
| MnlI | CCTC | 9 cut(s) | 58, 83, 87, 199, 304, 336, 434, 510, 729 |
| Mph1103I | ATGCAT | 1 cut(s) | 624 |
| MseI | TTAA | 3 cut(s) | 276, 383, 396 |
| MspR9I | CCNGG | 1 cut(s) | 19 |
| MvaI | CCWGG | 1 cut(s) | 19 |
| NdeII | GATC | 4 cut(s) | 14, 534, 543, 678 |
| NlaIII | CATG | 4 cut(s) | 252, 293, 530, 769 |
| NlaIV | GGNNCC | 2 cut(s) | 16, 264 |
| NmeAIII | GCCGAG | 1 cut(s) | 197 |
| NsbI | TGCGCA | 1 cut(s) | 609 |
| NsiI | ATGCAT | 1 cut(s) | 624 |
| NspI | RCATGY | 1 cut(s) | 530 |
| PaqCI | CACCTGC | 1 cut(s) | 601 |
| PfeI | GAWTC | 1 cut(s) | 97 |
| PflFI | GACNNNGTC | 1 cut(s) | 7 |
| PfoI | TCCNGGA | 1 cut(s) | 17 |
| PleI | GAGTC | 2 cut(s) | 209, 607 |
| PpsI | GAGTC | 2 cut(s) | 209, 607 |
| PpuMI | RGGWCCY | 1 cut(s) | 262 |
| Psp124BI | GAGCTC | 1 cut(s) | 773 |
| Psp5II | RGGWCCY | 1 cut(s) | 262 |
| Psp6I | CCWGG | 1 cut(s) | 17 |
| PspGI | CCWGG | 1 cut(s) | 17 |
| PspN4I | GGNNCC | 2 cut(s) | 16, 264 |
| PspPI | GGNCC | 1 cut(s) | 262 |
| PspPPI | RGGWCCY | 1 cut(s) | 262 |
| PstNI | CAGNNNCTG | 1 cut(s) | 616 |
| PsuI | RGATCY | 2 cut(s) | 14, 534 |
| PsyI | GACNNNGTC | 1 cut(s) | 7 |
| SacI | GAGCTC | 1 cut(s) | 773 |
| SaqAI | TTAA | 3 cut(s) | 276, 383, 396 |
| Sau3AI | GATC | 4 cut(s) | 14, 534, 543, 678 |
| Sau96I | GGNCC | 1 cut(s) | 262 |
| SchI | GAGTC | 2 cut(s) | 209, 608 |
| ScrFI | CCNGG | 1 cut(s) | 19 |
| SduI | GDGCHC | 1 cut(s) | 773 |
| SetI | ASST | 9 cut(s) | 264, 307, 396, 615, 640, 658, 669, 714, 773 |
| SfaNI | GCATC | 3 cut(s) | 218, 595, 609 |
| SinI | GGWCC | 1 cut(s) | 262 |
| Sse9I | AATT | 4 cut(s) | 43, 69, 253, 273 |
| SsiI | CCGC | 4 cut(s) | 244, 293, 482, 552 |
| SspMI | CTAG | 5 cut(s) | 129, 153, 489, 522, 596 |
| SstI | GAGCTC | 1 cut(s) | 773 |
| StyD4I | CCNGG | 1 cut(s) | 17 |
| TaaI | ACNGT | 3 cut(s) | 148, 413, 509 |
| TaiI | ACGT | 2 cut(s) | 307, 714 |
| TasI | AATT | 4 cut(s) | 43, 69, 253, 273 |
| TfiI | GAWTC | 1 cut(s) | 97 |
| Tru1I | TTAA | 3 cut(s) | 276, 383, 396 |
| Tru9I | TTAA | 3 cut(s) | 276, 383, 396 |
| TscAI | CASTG | 1 cut(s) | 336 |
| TspDTI | ATGAA | 2 cut(s) | 203, 242 |
| TspRI | CASTG | 1 cut(s) | 336 |
| Tth111I | GACNNNGTC | 1 cut(s) | 7 |
| VpaK11BI | GGWCC | 1 cut(s) | 262 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 87 |
| XapI | RAATTY | 1 cut(s) | 253 |
| XceI | RCATGY | 1 cut(s) | 530 |
| XmiI | GTMKAC | 1 cut(s) | 736 |
| XspI | CTAG | 5 cut(s) | 129, 153, 489, 522, 596 |
| Zsp2I | ATGCAT | 1 cut(s) | 624 |