Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 117 - 220 | 1.7e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 265 |
| AccBSI | CCGCTC | 1 cut(s) | 51 |
| AciI | CCGC | 2 cut(s) | 51, 602 |
| AcsI | RAATTY | 1 cut(s) | 224 |
| AcuI | CTGAAG | 2 cut(s) | 207, 234 |
| AfaI | GTAC | 1 cut(s) | 463 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 332 |
| AgsI | TTSAA | 7 cut(s) | 122, 148, 232, 295, 343, 582, 629 |
| AluBI | AGCT | 3 cut(s) | 248, 434, 599 |
| AluI | AGCT | 3 cut(s) | 248, 434, 599 |
| Alw26I | GTCTC | 1 cut(s) | 560 |
| Ama87I | CYCGRG | 1 cut(s) | 557 |
| ApeKI | GCWGC | 3 cut(s) | 431, 434, 599 |
| ApoI | RAATTY | 1 cut(s) | 224 |
| AseI | ATTAAT | 1 cut(s) | 576 |
| AsuHPI | GGTGA | 1 cut(s) | 484 |
| AsuII | TTCGAA | 1 cut(s) | 659 |
| AvaI | CYCGRG | 1 cut(s) | 557 |
| BbvI | GCAGC | 3 cut(s) | 421, 443, 586 |
| BccI | CCATC | 3 cut(s) | 2, 275, 350 |
| BclI | TGATCA | 1 cut(s) | 27 |
| BcoDI | GTCTC | 1 cut(s) | 560 |
| BfmI | CTRYAG | 1 cut(s) | 435 |
| BfuAI | ACCTGC | 1 cut(s) | 265 |
| BisI | GCNGC | 3 cut(s) | 432, 435, 600 |
| BlsI | GCNGC | 3 cut(s) | 433, 436, 601 |
| BmeT110I | CYCGRG | 1 cut(s) | 557 |
| BpmI | CTGGAG | 1 cut(s) | 524 |
| Bpu14I | TTCGAA | 1 cut(s) | 659 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 332 |
| Bse118I | RCCGGY | 1 cut(s) | 193 |
| Bse1I | ACTGG | 2 cut(s) | 489, 507 |
| BseGI | GGATG | 3 cut(s) | 13, 18, 538 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 332 |
| BseMII | CTCAG | 1 cut(s) | 189 |
| BseNI | ACTGG | 2 cut(s) | 489, 507 |
| BseRI | GAGGAG | 3 cut(s) | 125, 128, 312 |
| BseXI | GCAGC | 3 cut(s) | 421, 443, 586 |
| BsgI | GTGCAG | 1 cut(s) | 381 |
| BsiHKCI | CYCGRG | 1 cut(s) | 557 |
| BsiSI | CCGG | 1 cut(s) | 194 |
| BslFI | GGGAC | 1 cut(s) | 513 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 332 |
| BsmAI | GTCTC | 1 cut(s) | 560 |
| BsmFI | GGGAC | 1 cut(s) | 513 |
| BsoBI | CYCGRG | 1 cut(s) | 557 |
| Bsp119I | TTCGAA | 1 cut(s) | 659 |
| Bsp143I | GATC | 1 cut(s) | 27 |
| BspACI | CCGC | 2 cut(s) | 51, 602 |
| BspCNI | CTCAG | 1 cut(s) | 190 |
| BspMAI | CTGCAG | 1 cut(s) | 439 |
| BspMI | ACCTGC | 1 cut(s) | 265 |
| BspT104I | TTCGAA | 1 cut(s) | 659 |
| BsrBI | CCGCTC | 1 cut(s) | 51 |
| BsrFI | RCCGGY | 1 cut(s) | 193 |
| BsrI | ACTGG | 2 cut(s) | 489, 507 |
| BssAI | RCCGGY | 1 cut(s) | 193 |
| BssMI | GATC | 1 cut(s) | 27 |
| Bst4CI | ACNGT | 1 cut(s) | 170 |
| BstBI | TTCGAA | 1 cut(s) | 659 |
| BstC8I | GCNNGC | 1 cut(s) | 195 |
| BstDEI | CTNAG | 1 cut(s) | 198 |
| BstF5I | GGATG | 3 cut(s) | 13, 18, 538 |
| BstKTI | GATC | 1 cut(s) | 30 |
| BstMAI | GTCTC | 1 cut(s) | 560 |
| BstMBI | GATC | 1 cut(s) | 27 |
| BstSFI | CTRYAG | 1 cut(s) | 435 |
| BstV1I | GCAGC | 3 cut(s) | 421, 443, 586 |
| BtsCI | GGATG | 3 cut(s) | 13, 18, 538 |
| BtsI | GCAGTG | 1 cut(s) | 369 |
| BtsIMutI | CAGTG | 1 cut(s) | 369 |
| BveI | ACCTGC | 1 cut(s) | 265 |
| Cac8I | GCNNGC | 1 cut(s) | 195 |
| Cfr10I | RCCGGY | 1 cut(s) | 193 |
| Csp6I | GTAC | 1 cut(s) | 462 |
| CviAII | CATG | 2 cut(s) | 89, 654 |
| CviJI | RGCY | 5 cut(s) | 58, 197, 248, 434, 599 |
| CviKI_1 | RGCY | 5 cut(s) | 58, 197, 248, 434, 599 |
| CviQI | GTAC | 1 cut(s) | 462 |
| DdeI | CTNAG | 1 cut(s) | 198 |
| DpnI | GATC | 1 cut(s) | 29 |
| DpnII | GATC | 1 cut(s) | 27 |
| Eco57I | CTGAAG | 2 cut(s) | 207, 234 |
| Eco88I | CYCGRG | 1 cut(s) | 557 |
| FaeI | CATG | 2 cut(s) | 92, 657 |
| FaiI | YATR | 7 cut(s) | 40, 90, 156, 177, 206, 638, 655 |
| FaqI | GGGAC | 1 cut(s) | 513 |
| FatI | CATG | 2 cut(s) | 88, 653 |
| FauI | CCCGC | 1 cut(s) | 44 |
| FbaI | TGATCA | 1 cut(s) | 27 |
| Fnu4HI | GCNGC | 3 cut(s) | 432, 435, 600 |
| FokI | GGATG | 3 cut(s) | 20, 25, 545 |
| Fsp4HI | GCNGC | 3 cut(s) | 432, 435, 600 |
| GluI | GCNGC | 3 cut(s) | 432, 435, 600 |
| GsuI | CTGGAG | 1 cut(s) | 524 |
| HapII | CCGG | 1 cut(s) | 194 |
| Hin1II | CATG | 2 cut(s) | 92, 657 |
| HindIII | AAGCTT | 1 cut(s) | 246 |
| HinfI | GANTC | 5 cut(s) | 19, 237, 319, 381, 545 |
| HpaII | CCGG | 1 cut(s) | 194 |
| HphI | GGTGA | 1 cut(s) | 484 |
| Hpy166II | GTNNAC | 1 cut(s) | 318 |
| Hpy188I | TCNGA | 2 cut(s) | 187, 550 |
| Hpy188III | TCNNGA | 4 cut(s) | 25, 127, 340, 557 |
| Hpy8I | GTNNAC | 1 cut(s) | 318 |
| Hpy99I | CGWCG | 2 cut(s) | 261, 264 |
| HpyAV | CCTTC | 5 cut(s) | 337, 516, 599, 655, 660 |
| HpyCH4III | ACNGT | 1 cut(s) | 170 |
| HpyCH4V | TGCA | 3 cut(s) | 362, 431, 437 |
| HpyF3I | CTNAG | 1 cut(s) | 198 |
| Hsp92II | CATG | 2 cut(s) | 92, 657 |
| KroI | GCCGGC | 1 cut(s) | 193 |
| KroNI | GCCGGC | 1 cut(s) | 195 |
| Ksp22I | TGATCA | 1 cut(s) | 27 |
| Kzo9I | GATC | 1 cut(s) | 27 |
| LmnI | GCTCC | 1 cut(s) | 271 |
| LpnPI | CCDG | 8 cut(s) | 207, 237, 260, 339, 423, 464, 470, 488 |
| Lsp1109I | GCAGC | 3 cut(s) | 421, 443, 586 |
| MaeIII | GTNAC | 2 cut(s) | 472, 525 |
| MalI | GATC | 1 cut(s) | 29 |
| MbiI | CCGCTC | 1 cut(s) | 51 |
| MboI | GATC | 1 cut(s) | 27 |
| MboII | GAAGA | 1 cut(s) | 376 |
| MfeI | CAATTG | 1 cut(s) | 349 |
| MlyI | GAGTC | 2 cut(s) | 246, 313 |
| MmeI | TCCRAC | 1 cut(s) | 592 |
| MnlI | CCTC | 9 cut(s) | 48, 103, 106, 109, 333, 406, 499, 553, 613 |
| MroNI | GCCGGC | 1 cut(s) | 193 |
| MseI | TTAA | 2 cut(s) | 492, 576 |
| MspA1I | CMGCKG | 1 cut(s) | 434 |
| MspI | CCGG | 1 cut(s) | 194 |
| MunI | CAATTG | 1 cut(s) | 349 |
| NaeI | GCCGGC | 1 cut(s) | 195 |
| NdeII | GATC | 1 cut(s) | 27 |
| NgoMIV | GCCGGC | 1 cut(s) | 193 |
| NlaIII | CATG | 2 cut(s) | 92, 657 |
| NmuCI | GTSAC | 1 cut(s) | 472 |
| NspV | TTCGAA | 1 cut(s) | 659 |
| PaeR7I | CTCGAG | 1 cut(s) | 557 |
| PdiI | GCCGGC | 1 cut(s) | 195 |
| PfeI | GAWTC | 3 cut(s) | 19, 381, 545 |
| PkrI | GCNGC | 3 cut(s) | 433, 436, 601 |
| PleI | GAGTC | 2 cut(s) | 245, 313 |
| PpsI | GAGTC | 2 cut(s) | 245, 313 |
| PshBI | ATTAAT | 1 cut(s) | 576 |
| PstI | CTGCAG | 1 cut(s) | 439 |
| PvuII | CAGCTG | 1 cut(s) | 434 |
| RsaI | GTAC | 1 cut(s) | 463 |
| RsaNI | GTAC | 1 cut(s) | 462 |
| SaqAI | TTAA | 2 cut(s) | 492, 576 |
| SatI | GCNGC | 3 cut(s) | 432, 435, 600 |
| Sau3AI | GATC | 1 cut(s) | 27 |
| SchI | GAGTC | 2 cut(s) | 246, 313 |
| SfcI | CTRYAG | 1 cut(s) | 435 |
| Sfr274I | CTCGAG | 1 cut(s) | 557 |
| SfuI | TTCGAA | 1 cut(s) | 659 |
| SlaI | CTCGAG | 1 cut(s) | 557 |
| SmlI | CTYRAG | 1 cut(s) | 557 |
| SmoI | CTYRAG | 1 cut(s) | 557 |
| SsiI | CCGC | 2 cut(s) | 51, 602 |
| TaaI | ACNGT | 1 cut(s) | 170 |
| TaqI | TCGA | 2 cut(s) | 558, 659 |
| TatI | WGTACW | 1 cut(s) | 461 |
| TfiI | GAWTC | 3 cut(s) | 19, 381, 545 |
| Tru1I | TTAA | 2 cut(s) | 492, 576 |
| Tru9I | TTAA | 2 cut(s) | 492, 576 |
| TscAI | CASTG | 1 cut(s) | 369 |
| TseFI | GTSAC | 1 cut(s) | 472 |
| TseI | GCWGC | 3 cut(s) | 431, 434, 599 |
| Tsp45I | GTSAC | 1 cut(s) | 472 |
| TspDTI | ATGAA | 2 cut(s) | 74, 171 |
| TspRI | CASTG | 1 cut(s) | 369 |
| VspI | ATTAAT | 1 cut(s) | 576 |
| XapI | RAATTY | 1 cut(s) | 224 |
| XhoI | CTCGAG | 1 cut(s) | 557 |